Wall clock time and date at job start Tue Mar 31 2020 14:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00292 * 2 1 4 4 C 1.50703 * 109.47167 * 269.99928 * 3 2 1 5 5 O 1.21289 * 119.99902 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00214 * 179.97438 * 4 3 2 7 7 C 1.39925 * 120.00215 * 174.78781 * 6 4 3 8 8 C 1.38969 * 120.03216 * 326.31943 * 7 6 4 9 9 C 1.38150 * 120.06449 * 180.02562 * 8 7 6 10 10 C 1.38171 * 120.14342 * 359.70331 * 9 8 7 11 11 C 1.38915 * 120.06524 * 0.54710 * 10 9 8 12 12 O 1.35750 * 120.02965 * 179.74314 * 11 10 9 13 13 C 1.34834 * 116.99402 * 173.82644 * 12 11 10 14 14 H 1.07995 * 120.00374 * 354.60408 * 13 12 11 15 15 C 1.38657 * 119.99727 * 174.60593 * 13 12 11 16 16 N 1.31554 * 120.00264 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00019 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46783 * 90.00181 * 17 15 13 19 19 H 1.48500 * 109.46898 * 210.00273 * 17 15 13 20 20 H 1.48497 * 109.46956 * 330.00132 * 17 15 13 21 21 C 1.38710 * 120.03903 * 146.34780 * 7 6 4 22 22 C 1.39678 * 119.99535 * 179.97438 * 2 1 3 23 23 C 1.38915 * 120.07117 * 179.72717 * 22 2 1 24 24 C 1.38105 * 119.92508 * 179.77113 * 23 22 2 25 25 C 1.38288 * 120.07220 * 0.49965 * 24 23 22 26 26 C 1.38283 * 120.14900 * 359.75318 * 25 24 23 27 27 C 1.38104 * 120.07842 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.47164 * 89.99977 * 1 2 3 29 29 H 1.09005 * 109.47317 * 210.00421 * 1 2 3 30 30 H 1.09005 * 109.47181 * 330.00396 * 1 2 3 31 31 H 1.08998 * 109.47722 * 150.00094 * 3 2 1 32 32 H 1.08997 * 109.47235 * 29.99631 * 3 2 1 33 33 H 0.96999 * 120.00183 * 354.78589 * 6 4 3 34 34 H 1.08001 * 119.96350 * 0.02586 * 8 7 6 35 35 H 1.07996 * 119.93282 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.97102 * 180.30102 * 10 9 8 37 37 H 0.96996 * 120.00599 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.07082 * 359.97438 * 21 7 6 39 39 H 1.08000 * 120.03575 * 359.97438 * 23 22 2 40 40 H 1.07993 * 119.96488 * 180.24792 * 24 23 22 41 41 H 1.08001 * 119.92467 * 179.72011 * 25 24 23 42 42 H 1.08004 * 119.96357 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.04064 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 8 2.0550 1.0209 -2.3427 6 7 3.1109 2.8514 -1.6671 7 6 3.4399 3.2011 -2.9814 8 6 3.7525 2.2125 -3.9067 9 6 4.0780 2.5570 -5.2043 10 6 4.0879 3.8843 -5.5881 11 6 3.7814 4.8775 -4.6665 12 8 3.7965 6.1817 -5.0430 13 6 3.3665 7.0847 -4.1388 14 1 2.9495 6.7522 -3.1997 15 6 3.4596 8.4404 -4.4147 16 7 3.0406 9.3216 -3.5323 17 14 4.1815 9.0156 -6.0388 18 1 3.0976 9.1382 -7.0464 19 1 4.8339 10.3362 -5.8503 20 1 5.1867 8.0297 -6.5105 21 6 3.4550 4.5349 -3.3620 22 6 2.1633 -1.2097 0.0005 23 6 3.5524 -1.2116 -0.0052 24 6 4.2398 -2.4094 0.0002 25 6 3.5468 -3.6060 0.0007 26 6 2.1639 -3.6078 0.0011 27 6 1.4703 -2.4136 0.0015 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8901 0.5138 31 1 3.1499 1.1384 0.5138 32 1 1.6085 2.0283 0.5138 33 1 3.3593 3.4351 -0.9333 34 1 3.7410 1.1738 -3.6110 35 1 4.3210 1.7870 -5.9215 36 1 4.3381 4.1502 -6.6045 37 1 3.1061 10.2699 -3.7251 38 1 3.2125 5.3051 -2.6448 39 1 4.0942 -0.2773 -0.0105 40 1 5.3197 -2.4115 -0.0002 41 1 4.0867 -4.5414 0.0003 42 1 1.6257 -4.5441 0.0012 43 1 0.3903 -2.4156 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065868827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:17 Heat of formation + Delta-G solvation = 15.510089 kcal Electronic energy + Delta-G solvation = -26337.149770 eV Core-core repulsion = 22541.873523 eV Total energy + Delta-G solvation = -3795.276247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.49510 -39.52610 -38.71931 -36.79305 -35.93449 -34.29025 -32.39040 -31.36289 -30.40970 -29.66722 -29.15671 -28.16767 -25.43948 -25.13983 -22.76849 -22.13055 -21.81260 -20.96853 -19.97111 -18.16515 -17.97334 -17.72844 -17.11611 -16.12798 -15.76915 -15.42594 -15.33282 -15.02130 -14.78231 -14.41227 -14.27467 -13.87619 -13.82811 -13.70233 -13.55533 -13.36224 -13.06627 -12.72167 -12.38829 -12.30074 -12.24361 -12.04065 -11.70730 -11.55724 -11.24350 -10.99888 -10.95283 -10.73121 -10.40075 -10.27863 -9.91610 -9.56108 -9.48364 -9.02312 -8.87780 -7.83764 -7.47610 -7.32517 -6.45635 -4.12888 1.33907 1.49752 1.85150 2.24323 2.68312 2.77174 3.20883 3.23337 3.32323 3.38417 3.81821 4.20997 4.45598 4.60636 4.64888 4.70391 4.84885 4.85863 4.94798 5.03523 5.05458 5.09764 5.30270 5.35188 5.46807 5.58999 5.60476 5.61702 5.87587 5.88933 5.94646 6.10723 6.13940 6.17146 6.37217 6.45046 6.53072 6.70782 6.85054 6.86388 7.00136 7.16414 7.17751 7.29265 7.52944 7.66667 7.73934 7.98944 8.25460 8.89924 9.52346 10.62072 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.024431 B = 0.002451 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.824513 B =11421.800602 C =12026.600142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.612 5.612 3 C 0.106 3.894 4 C 0.484 3.516 5 O -0.504 6.504 6 N -0.671 5.671 7 C 0.181 3.819 8 C -0.197 4.197 9 C -0.064 4.064 10 C -0.200 4.200 11 C 0.174 3.826 12 O -0.216 6.216 13 C -0.389 4.389 14 H 0.104 0.896 15 C 0.064 3.936 16 N -0.880 5.880 17 Si 0.905 3.095 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.244 4.244 22 C 0.224 3.776 23 C -0.194 4.194 24 C -0.072 4.072 25 C -0.182 4.182 26 C -0.075 4.075 27 C -0.195 4.195 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.407 0.593 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.279 0.721 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -20.003 10.494 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.322 5.322 3 C -0.022 4.022 4 C 0.269 3.731 5 O -0.378 6.378 6 N -0.317 5.317 7 C 0.087 3.913 8 C -0.218 4.218 9 C -0.083 4.083 10 C -0.220 4.220 11 C 0.121 3.879 12 O -0.121 6.121 13 C -0.465 4.465 14 H 0.122 0.878 15 C -0.140 4.140 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.266 4.266 22 C 0.123 3.877 23 C -0.217 4.217 24 C -0.091 4.091 25 C -0.202 4.202 26 C -0.093 4.093 27 C -0.217 4.217 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.243 0.757 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.346 -20.030 9.735 22.311 hybrid contribution 0.287 0.914 -0.207 0.980 sum -1.059 -19.116 9.528 21.386 Atomic orbital electron populations 1.21693 0.78870 1.02433 1.01884 1.45905 1.04956 1.01762 1.79540 1.21304 0.99916 0.87393 0.93598 1.21582 0.77860 0.80975 0.92720 1.90737 1.48324 1.52977 1.45721 1.43559 1.57003 1.23177 1.07933 1.17417 0.97211 0.92907 0.83737 1.20594 1.08821 0.98441 0.93953 1.20531 0.97722 0.94800 0.95279 1.20249 1.11175 0.91346 0.99250 1.18814 0.92838 0.84755 0.91474 1.83615 1.74785 1.12012 1.41671 1.20717 1.40094 0.85854 0.99829 0.87834 1.24464 0.96312 0.94307 0.98885 1.69637 1.45388 1.02187 1.34638 0.86177 0.80127 0.78111 0.82487 1.19843 1.20828 1.18298 1.20932 1.13207 0.94699 0.97738 1.17775 0.91147 0.85467 0.93287 1.20657 0.92154 0.98673 1.10176 1.20875 0.99441 0.91964 0.96800 1.20888 0.94283 0.97758 1.07241 1.20867 0.94250 0.97082 0.97124 1.20656 0.99622 0.91058 1.10333 0.92789 0.91110 0.91451 0.87447 0.87441 0.75737 0.86269 0.86481 0.86376 0.91044 0.84631 0.86493 0.86281 0.86625 0.86347 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 10.23 59.85 0.61 1.44 16 2 N -0.61 -6.53 2.50 -181.00 -0.45 -6.98 16 3 C 0.11 1.01 5.68 -5.20 -0.03 0.98 16 4 C 0.48 6.74 7.63 -10.99 -0.08 6.66 16 5 O -0.50 -9.13 14.14 5.55 0.08 -9.05 16 6 N -0.67 -9.57 5.34 -9.88 -0.05 -9.62 16 7 C 0.18 3.35 6.27 -83.72 -0.52 2.82 16 8 C -0.20 -3.69 8.65 -39.34 -0.34 -4.03 16 9 C -0.06 -1.17 10.03 -39.64 -0.40 -1.56 16 10 C -0.20 -4.04 9.99 -39.36 -0.39 -4.43 16 11 C 0.17 4.00 6.64 -39.13 -0.26 3.74 16 12 O -0.22 -5.63 8.58 0.04 0.00 -5.63 16 13 C -0.39 -10.76 9.90 30.89 0.31 -10.46 16 14 H 0.10 2.90 5.53 -52.49 -0.29 2.61 16 15 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 16 N -0.88 -24.98 13.96 55.48 0.77 -24.20 16 17 Si 0.91 21.44 28.62 -169.99 -4.86 16.57 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 21 C -0.24 -5.16 9.04 -39.21 -0.35 -5.51 16 22 C 0.22 2.60 6.55 -83.78 -0.55 2.05 16 23 C -0.19 -2.20 9.20 -39.38 -0.36 -2.57 16 24 C -0.07 -0.74 10.04 -39.61 -0.40 -1.14 16 25 C -0.18 -1.78 10.04 -39.55 -0.40 -2.17 16 26 C -0.07 -0.73 10.04 -39.61 -0.40 -1.12 16 27 C -0.19 -2.07 9.21 -39.38 -0.36 -2.43 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.51 6.20 -51.93 -0.32 0.19 16 30 H 0.07 0.47 7.89 -51.93 -0.41 0.06 16 31 H 0.11 0.81 6.21 -51.93 -0.32 0.49 16 32 H 0.11 0.74 7.89 -51.93 -0.41 0.33 16 33 H 0.41 4.45 8.82 -40.82 -0.36 4.09 16 34 H 0.12 2.23 6.43 -52.49 -0.34 1.89 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 37 H 0.28 7.33 8.31 -40.82 -0.34 7.00 16 38 H 0.14 2.93 5.71 -52.49 -0.30 2.63 16 39 H 0.12 1.22 6.15 -52.49 -0.32 0.90 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 43 H 0.12 1.10 6.14 -52.49 -0.32 0.77 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -33.43 362.83 -8.14 -41.57 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -5.07 Total: 7.96 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -4.03 Total: -16.08 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.27 Total: -40.80 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.86 Total: 16.57 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.43 -8.14 -41.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065868827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.083 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds