Wall clock time and date at job start Tue Mar 31 2020 14:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00339 * 2 1 4 4 O 1.21726 * 120.00070 * 179.97438 * 3 2 1 5 5 C 1.46256 * 120.00142 * 0.02562 * 3 2 1 6 6 C 1.35021 * 120.00265 * 179.97438 * 5 3 2 7 7 C 1.46962 * 119.99962 * 180.02562 * 6 5 3 8 8 C 1.40018 * 120.10117 * 359.72169 * 7 6 5 9 9 C 1.37599 * 119.89790 * 179.70130 * 8 7 6 10 10 C 1.39173 * 120.10085 * 0.59716 * 9 8 7 11 11 O 1.35564 * 119.90138 * 179.69943 * 10 9 8 12 12 C 1.34789 * 117.00054 * 174.42415 * 11 10 9 13 13 H 1.07996 * 119.99585 * 5.05919 * 12 11 10 14 14 C 1.38714 * 119.99914 * 185.05178 * 12 11 10 15 15 N 1.31515 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00118 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47112 * 60.00260 * 16 14 12 18 18 H 1.48494 * 109.47504 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47076 * 300.00514 * 16 14 12 20 20 C 1.39184 * 120.20093 * 359.68109 * 10 9 8 21 21 C 1.37600 * 120.10187 * 0.02562 * 20 10 9 22 22 C 1.46501 * 119.99972 * 180.02562 * 2 1 3 23 23 C 1.47200 * 112.85283 * 131.19395 * 22 2 1 24 24 N 3.45188 * 139.11583 * 233.16833 * 2 1 3 25 25 C 1.53785 * 113.61217 * 359.97438 * 22 2 1 26 26 C 1.53774 * 87.08398 * 219.93511 * 25 22 2 27 27 C 1.53782 * 87.17314 * 25.39041 * 26 25 22 28 28 H 1.09006 * 109.47392 * 270.00327 * 1 2 3 29 29 H 1.09007 * 109.46782 * 29.99573 * 1 2 3 30 30 H 1.09000 * 109.47442 * 149.99662 * 1 2 3 31 31 H 1.08003 * 119.99456 * 359.97438 * 5 3 2 32 32 H 1.07998 * 119.99396 * 0.02562 * 6 5 3 33 33 H 1.08008 * 120.05088 * 359.97438 * 8 7 6 34 34 H 1.07994 * 119.95047 * 180.28083 * 9 8 7 35 35 H 0.97003 * 119.99742 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.94708 * 179.97438 * 20 10 9 37 37 H 1.07994 * 120.04993 * 180.02562 * 21 20 10 38 38 H 1.09003 * 113.61284 * 105.38593 * 25 22 2 39 39 H 1.08996 * 113.69406 * 334.49949 * 25 22 2 40 40 H 1.09000 * 113.61752 * 139.97980 * 26 25 22 41 41 H 1.09006 * 113.61489 * 270.80194 * 26 25 22 42 42 H 1.08998 * 113.61148 * 89.15870 * 27 26 25 43 43 H 1.08996 * 113.61687 * 220.06070 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3562 1.1671 0.0005 5 6 1.4077 2.4338 0.0006 6 6 2.0829 3.6031 0.0011 7 6 1.3481 4.8759 0.0022 8 6 -0.0520 4.8784 -0.0031 9 6 -0.7358 6.0725 0.0042 10 6 -0.0378 7.2765 0.0043 11 8 -0.7155 8.4506 0.0054 12 6 0.0138 9.5781 0.1221 13 1 1.0925 9.5253 0.1271 14 6 -0.6211 10.8061 0.2357 15 7 -1.9347 10.8703 0.2300 16 14 0.3896 12.3688 0.3968 17 1 1.2570 12.5227 -0.7986 18 1 -0.5199 13.5379 0.5028 19 1 1.2352 12.2880 1.6149 20 6 1.3541 7.2789 0.0038 21 6 2.0462 6.0897 0.0026 22 6 2.1975 -1.2687 -0.0006 23 6 3.2570 -1.3167 -1.0213 24 7 4.0747 -1.3544 -1.8084 25 6 1.2851 -2.5067 -0.0005 26 6 2.2799 -3.1426 0.9848 27 6 2.6692 -1.7128 1.3960 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 0.3277 2.4338 0.0006 32 1 3.1629 3.6030 0.0007 33 1 -0.5946 3.9445 -0.0085 34 1 -1.8157 6.0754 0.0047 35 1 -2.3786 11.7291 0.3098 36 1 1.8916 8.2157 0.0035 37 1 3.1262 6.0925 0.0025 38 1 1.2390 -3.0152 -0.9636 39 1 0.3002 -2.3250 0.4296 40 1 1.8016 -3.7113 1.7822 41 1 3.0860 -3.6917 0.4981 42 1 2.0639 -1.3123 2.2092 43 1 3.7389 -1.5813 1.5588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066336154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:02 Heat of formation + Delta-G solvation = 44.735584 kcal Electronic energy + Delta-G solvation = -25671.296114 eV Core-core repulsion = 21877.287180 eV Total energy + Delta-G solvation = -3794.008934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98484 -39.26014 -38.58544 -36.90033 -36.03858 -34.77199 -33.22384 -32.31443 -30.46546 -28.58540 -27.95577 -26.56761 -25.77783 -25.37380 -23.16414 -22.16014 -21.45163 -20.73610 -18.98852 -18.14441 -17.70105 -17.10441 -16.90250 -16.58890 -15.33908 -15.25083 -14.93580 -14.82376 -14.46507 -14.16058 -13.98701 -13.86070 -13.53778 -13.38387 -13.17716 -13.10411 -12.99991 -12.91758 -12.62942 -12.32876 -12.07853 -11.88829 -11.82273 -11.77220 -11.61575 -11.26318 -11.12990 -11.11242 -11.01598 -10.72733 -10.56877 -9.79268 -9.64040 -9.53170 -9.03317 -8.87362 -8.41594 -7.15448 -6.67915 -4.22661 0.99598 2.10567 2.15964 2.45937 2.51125 3.02571 3.03685 3.06516 3.12143 3.36570 3.56473 3.80164 3.91334 4.05741 4.33176 4.47753 4.61469 4.83414 4.85984 4.89583 4.99505 5.08102 5.14274 5.19226 5.23781 5.37176 5.41700 5.43386 5.50125 5.54772 5.57553 5.63757 5.74150 5.97373 6.08116 6.12283 6.42643 6.43562 6.56523 6.75548 6.87638 7.08929 7.15642 7.21378 7.27407 7.37387 7.60497 7.77271 8.14752 8.76677 9.43066 10.48432 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.034180 B = 0.001950 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.994078 B =14356.264016 C =14828.801631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.556 3.444 4 O -0.544 6.544 5 C -0.287 4.287 6 C 0.044 3.956 7 C -0.201 4.201 8 C -0.041 4.041 9 C -0.200 4.200 10 C 0.167 3.833 11 O -0.161 6.161 12 C -0.393 4.393 13 H 0.097 0.903 14 C 0.042 3.958 15 N -0.851 5.851 16 Si 0.945 3.055 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.267 1.267 20 C -0.242 4.242 21 C -0.033 4.033 22 C 0.244 3.756 23 C 0.227 3.773 24 N -0.409 5.409 25 C -0.128 4.128 26 C -0.141 4.141 27 C -0.128 4.128 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.275 0.725 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.104 0.896 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 -22.609 3.003 22.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.351 3.649 4 O -0.423 6.423 5 C -0.308 4.308 6 C 0.024 3.976 7 C -0.202 4.202 8 C -0.060 4.060 9 C -0.219 4.219 10 C 0.111 3.889 11 O -0.062 6.062 12 C -0.469 4.469 13 H 0.114 0.886 14 C -0.165 4.165 15 N -0.484 5.484 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.192 1.192 20 C -0.262 4.262 21 C -0.052 4.052 22 C 0.155 3.845 23 C -0.092 4.092 24 N -0.085 5.085 25 C -0.167 4.167 26 C -0.179 4.179 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.085 0.915 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.873 -22.353 1.797 22.608 hybrid contribution 0.124 0.975 0.287 1.024 sum 2.997 -21.378 2.084 21.688 Atomic orbital electron populations 1.21973 0.78299 1.03905 1.02538 1.47754 1.07033 1.03815 1.75653 1.18580 0.87219 0.84087 0.75057 1.90812 1.13857 1.87291 1.50346 1.22454 1.00076 0.90935 1.17305 1.22327 0.99297 0.91051 0.84891 1.18439 0.93093 0.91906 1.16756 1.20858 0.92882 0.96585 0.95629 1.20146 0.99686 0.89942 1.12110 1.19617 0.90729 0.87312 0.91286 1.83900 1.35536 1.11256 1.75459 1.21436 0.91448 0.81889 1.52101 0.88559 1.25401 0.96225 0.98871 0.95959 1.70005 1.07752 1.26947 1.43648 0.85710 0.78856 0.79085 0.79471 1.19236 1.20058 1.19220 1.21104 0.94012 0.98655 1.12393 1.20993 0.98581 0.91408 0.94198 1.18630 0.88835 0.85424 0.91634 1.28157 0.93947 0.93533 0.93605 1.81137 1.09756 1.07463 1.10120 1.23389 0.98852 0.92811 1.01656 1.22822 0.99173 0.96408 0.99454 1.23407 1.03341 0.95343 0.94683 0.91797 0.89894 0.90587 0.85359 0.86019 0.86438 0.86084 0.91504 0.85112 0.86828 0.89835 0.87015 0.89563 0.89644 0.87758 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 9.26 59.84 0.55 0.99 16 2 N -0.61 -6.00 2.97 -170.37 -0.51 -6.51 16 3 C 0.56 7.65 7.36 -13.04 -0.10 7.55 16 4 O -0.54 -9.48 14.92 5.17 0.08 -9.40 16 5 C -0.29 -3.76 8.61 -37.51 -0.32 -4.09 16 6 C 0.04 0.66 9.45 -37.19 -0.35 0.31 16 7 C -0.20 -3.34 5.87 -105.03 -0.62 -3.96 16 8 C -0.04 -0.68 9.40 -39.15 -0.37 -1.04 16 9 C -0.20 -3.87 9.97 -39.47 -0.39 -4.26 16 10 C 0.17 3.77 6.66 -38.88 -0.26 3.51 16 11 O -0.16 -4.30 9.74 0.74 0.01 -4.29 16 12 C -0.39 -10.33 9.48 30.91 0.29 -10.03 16 13 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 14 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 15 N -0.85 -23.54 13.67 55.48 0.76 -22.79 16 16 Si 0.94 19.34 29.55 -169.99 -5.02 14.31 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.24 -4.95 9.14 -39.46 -0.36 -5.31 16 21 C -0.03 -0.59 9.78 -39.15 -0.38 -0.97 16 22 C 0.24 2.22 1.16 -133.70 -0.16 2.06 16 23 C 0.23 2.94 12.54 -20.77 -0.26 2.68 16 24 N -0.41 -6.38 18.53 42.14 0.78 -5.59 16 25 C -0.13 -0.63 6.31 -25.92 -0.16 -0.79 16 26 C -0.14 -0.67 7.78 -25.92 -0.20 -0.88 16 27 C -0.13 -0.93 7.46 -25.83 -0.19 -1.13 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.50 6.09 -51.93 -0.32 0.18 16 30 H 0.08 0.27 6.24 -51.93 -0.32 -0.05 16 31 H 0.13 1.38 4.21 -52.48 -0.22 1.16 16 32 H 0.12 1.85 7.52 -52.49 -0.39 1.46 16 33 H 0.12 1.51 6.16 -52.48 -0.32 1.19 16 34 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.13 2.65 5.62 -52.49 -0.29 2.35 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.08 0.38 8.09 -51.93 -0.42 -0.03 16 39 H 0.11 0.30 6.32 -51.93 -0.33 -0.03 16 40 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.08 0.45 8.13 -51.93 -0.42 0.03 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 366.95 15.07 5.53 5.53 Total: -1.00 -33.11 366.95 -6.74 -39.84 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.99 Total: 3.26 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.37 Total: -14.36 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.03 Total: -34.88 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.11 -6.74 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066336154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.578 kcal (2) G-P(sol) polarization free energy of solvation -33.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds