Wall clock time and date at job start Tue Mar 31 2020 14:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00339 * 2 1 4 4 O 1.21726 * 120.00070 * 179.97438 * 3 2 1 5 5 C 1.46256 * 120.00142 * 0.02562 * 3 2 1 6 6 C 1.35021 * 120.00265 * 179.97438 * 5 3 2 7 7 C 1.46962 * 119.99962 * 180.02562 * 6 5 3 8 8 C 1.40018 * 120.10117 * 359.72169 * 7 6 5 9 9 C 1.37599 * 119.89790 * 179.70130 * 8 7 6 10 10 C 1.39173 * 120.10085 * 0.59716 * 9 8 7 11 11 O 1.35564 * 119.90138 * 179.69943 * 10 9 8 12 12 C 1.34789 * 117.00054 * 174.42415 * 11 10 9 13 13 H 1.07996 * 119.99585 * 5.05919 * 12 11 10 14 14 C 1.38714 * 119.99914 * 185.05178 * 12 11 10 15 15 N 1.31515 * 120.00051 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00118 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47112 * 60.00260 * 16 14 12 18 18 H 1.48494 * 109.47504 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47076 * 300.00514 * 16 14 12 20 20 C 1.39184 * 120.20093 * 359.68109 * 10 9 8 21 21 C 1.37600 * 120.10187 * 0.02562 * 20 10 9 22 22 C 1.46501 * 119.99972 * 180.02562 * 2 1 3 23 23 C 1.47200 * 112.85283 * 131.19395 * 22 2 1 24 24 N 3.45188 * 139.11583 * 233.16833 * 2 1 3 25 25 C 1.53785 * 113.61217 * 359.97438 * 22 2 1 26 26 C 1.53774 * 87.08398 * 219.93511 * 25 22 2 27 27 C 1.53782 * 87.17314 * 25.39041 * 26 25 22 28 28 H 1.09006 * 109.47392 * 270.00327 * 1 2 3 29 29 H 1.09007 * 109.46782 * 29.99573 * 1 2 3 30 30 H 1.09000 * 109.47442 * 149.99662 * 1 2 3 31 31 H 1.08003 * 119.99456 * 359.97438 * 5 3 2 32 32 H 1.07998 * 119.99396 * 0.02562 * 6 5 3 33 33 H 1.08008 * 120.05088 * 359.97438 * 8 7 6 34 34 H 1.07994 * 119.95047 * 180.28083 * 9 8 7 35 35 H 0.97003 * 119.99742 * 179.97438 * 15 14 12 36 36 H 1.08002 * 119.94708 * 179.97438 * 20 10 9 37 37 H 1.07994 * 120.04993 * 180.02562 * 21 20 10 38 38 H 1.09003 * 113.61284 * 105.38593 * 25 22 2 39 39 H 1.08996 * 113.69406 * 334.49949 * 25 22 2 40 40 H 1.09000 * 113.61752 * 139.97980 * 26 25 22 41 41 H 1.09006 * 113.61489 * 270.80194 * 26 25 22 42 42 H 1.08998 * 113.61148 * 89.15870 * 27 26 25 43 43 H 1.08996 * 113.61687 * 220.06070 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3562 1.1671 0.0005 5 6 1.4077 2.4338 0.0006 6 6 2.0829 3.6031 0.0011 7 6 1.3481 4.8759 0.0022 8 6 -0.0520 4.8784 -0.0031 9 6 -0.7358 6.0725 0.0042 10 6 -0.0378 7.2765 0.0043 11 8 -0.7155 8.4506 0.0054 12 6 0.0138 9.5781 0.1221 13 1 1.0925 9.5253 0.1271 14 6 -0.6211 10.8061 0.2357 15 7 -1.9347 10.8703 0.2300 16 14 0.3896 12.3688 0.3968 17 1 1.2570 12.5227 -0.7986 18 1 -0.5199 13.5379 0.5028 19 1 1.2352 12.2880 1.6149 20 6 1.3541 7.2789 0.0038 21 6 2.0462 6.0897 0.0026 22 6 2.1975 -1.2687 -0.0006 23 6 3.2570 -1.3167 -1.0213 24 7 4.0747 -1.3544 -1.8084 25 6 1.2851 -2.5067 -0.0005 26 6 2.2799 -3.1426 0.9848 27 6 2.6692 -1.7128 1.3960 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 0.3277 2.4338 0.0006 32 1 3.1629 3.6030 0.0007 33 1 -0.5946 3.9445 -0.0085 34 1 -1.8157 6.0754 0.0047 35 1 -2.3786 11.7291 0.3098 36 1 1.8916 8.2157 0.0035 37 1 3.1262 6.0925 0.0025 38 1 1.2390 -3.0152 -0.9636 39 1 0.3002 -2.3250 0.4296 40 1 1.8016 -3.7113 1.7822 41 1 3.0860 -3.6917 0.4981 42 1 2.0639 -1.3123 2.2092 43 1 3.7389 -1.5813 1.5588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066336154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:01 Heat of formation + Delta-G solvation = 24.424162 kcal Electronic energy + Delta-G solvation = -25672.176884 eV Core-core repulsion = 21877.287180 eV Total energy + Delta-G solvation = -3794.889703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76329 -40.83387 -39.57006 -38.44643 -37.07290 -35.59166 -34.71509 -33.95932 -31.96563 -29.89220 -28.59255 -27.63954 -27.09677 -26.12992 -24.39856 -23.63505 -22.22147 -21.85956 -20.33874 -19.53865 -18.84672 -18.61841 -17.80262 -17.30892 -16.49595 -16.37547 -16.17396 -15.95323 -15.77731 -15.61083 -15.38099 -14.99248 -14.85206 -14.59215 -14.10472 -14.08670 -13.94474 -13.85149 -13.71862 -13.56694 -13.31067 -13.16101 -12.84176 -12.68665 -12.60529 -12.55173 -12.31905 -12.19565 -12.11590 -11.67874 -11.56801 -11.21721 -11.11486 -10.85429 -10.57585 -9.88852 -9.79355 -8.68397 -8.52146 -6.18116 -0.27645 0.59044 1.09147 1.28332 1.35640 1.46614 1.51015 1.56196 2.15215 2.25053 2.27060 2.70369 2.86219 3.17850 3.33978 3.42756 3.51055 3.71099 3.85000 3.93342 4.08060 4.16650 4.27553 4.30974 4.44268 4.47985 4.65258 4.73179 4.73949 4.84240 4.93306 4.94713 4.99639 5.02027 5.08718 5.12715 5.19501 5.22626 5.31761 5.33953 5.50240 5.59436 5.64230 5.79959 5.97315 6.10446 6.28066 6.42205 6.92183 7.11640 7.68977 8.69437 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.034180 B = 0.001950 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.994078 B =14356.264016 C =14828.801631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.596 5.596 3 C 0.544 3.456 4 O -0.588 6.588 5 C -0.244 4.244 6 C 0.015 3.985 7 C -0.171 4.171 8 C -0.033 4.033 9 C -0.205 4.205 10 C 0.130 3.870 11 O -0.218 6.218 12 C -0.417 4.417 13 H 0.104 0.896 14 C -0.018 4.018 15 N -0.912 5.912 16 Si 1.017 2.983 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.258 1.258 20 C -0.250 4.250 21 C -0.043 4.043 22 C 0.219 3.781 23 C 0.242 3.758 24 N -0.470 5.470 25 C -0.109 4.109 26 C -0.131 4.131 27 C -0.129 4.129 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.163 0.837 32 H 0.117 0.883 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.275 0.725 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -26.630 3.859 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.328 5.328 3 C 0.337 3.663 4 O -0.470 6.470 5 C -0.264 4.264 6 C -0.004 4.004 7 C -0.172 4.172 8 C -0.051 4.051 9 C -0.224 4.224 10 C 0.078 3.922 11 O -0.123 6.123 12 C -0.493 4.493 13 H 0.121 0.879 14 C -0.217 4.217 15 N -0.548 5.548 16 Si 0.836 3.164 17 H -0.183 1.183 18 H -0.195 1.195 19 H -0.182 1.182 20 C -0.269 4.269 21 C -0.061 4.061 22 C 0.130 3.870 23 C -0.076 4.076 24 N -0.147 5.147 25 C -0.148 4.148 26 C -0.169 4.169 27 C -0.169 4.169 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.180 0.820 32 H 0.134 0.866 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.107 0.893 39 H 0.164 0.836 40 H 0.133 0.867 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.304 -26.474 2.651 26.706 hybrid contribution 0.470 1.500 0.025 1.572 sum 2.774 -24.974 2.676 25.270 Atomic orbital electron populations 1.22422 0.75270 1.05637 1.04833 1.47850 1.08798 1.02876 1.73305 1.18797 0.86792 0.85487 0.75177 1.90815 1.15875 1.88088 1.52234 1.22842 1.01590 0.90115 1.11851 1.22176 0.99208 0.90803 0.88258 1.18746 0.93465 0.92293 1.12675 1.21291 0.92803 0.97215 0.93802 1.20448 1.00298 0.89949 1.11682 1.20210 0.91956 0.87478 0.92570 1.83882 1.36604 1.12260 1.79534 1.21832 0.92001 0.82613 1.52854 0.87871 1.26581 0.97402 1.02118 0.95558 1.70137 1.09664 1.27619 1.47426 0.84668 0.77278 0.74581 0.79883 1.18265 1.19511 1.18186 1.21189 0.93506 0.99591 1.12658 1.21292 1.00011 0.90829 0.93939 1.19344 0.89437 0.86609 0.91567 1.29062 0.93674 0.91782 0.93114 1.81134 1.11750 1.09431 1.12355 1.23502 0.99472 0.89537 1.02272 1.22805 0.99005 0.95026 1.00072 1.23492 1.02212 0.97259 0.93906 0.89125 0.89635 0.87666 0.82027 0.86554 0.81740 0.85551 0.91566 0.85945 0.84325 0.89255 0.83560 0.86727 0.90646 0.86014 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 9.26 127.77 1.18 1.49 16 2 N -0.60 -9.11 2.97 -811.14 -2.41 -11.53 16 3 C 0.54 13.14 7.36 86.33 0.64 13.78 16 4 O -0.59 -19.66 14.92 -4.43 -0.07 -19.73 16 5 C -0.24 -5.28 8.61 23.61 0.20 -5.08 16 6 C 0.02 0.41 9.45 23.82 0.23 0.64 16 7 C -0.17 -5.21 5.87 -20.13 -0.12 -5.33 16 8 C -0.03 -0.98 9.40 22.55 0.21 -0.77 16 9 C -0.20 -7.82 9.97 22.34 0.22 -7.60 16 10 C 0.13 6.09 6.66 22.72 0.15 6.24 16 11 O -0.22 -12.46 9.74 -20.28 -0.20 -12.65 16 12 C -0.42 -23.34 9.48 67.93 0.64 -22.69 16 13 H 0.10 5.29 5.18 -2.91 -0.02 5.28 16 14 C -0.02 -0.96 5.49 84.85 0.47 -0.50 16 15 N -0.91 -53.78 13.67 21.62 0.30 -53.48 16 16 Si 1.02 41.35 29.55 68.60 2.03 43.38 16 17 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 18 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 20 C -0.25 -10.47 9.14 22.35 0.20 -10.26 16 21 C -0.04 -1.45 9.78 22.55 0.22 -1.23 16 22 C 0.22 3.25 1.16 2.39 0.00 3.25 16 23 C 0.24 5.99 12.54 89.45 1.12 7.11 16 24 N -0.47 -14.70 18.53 20.00 0.37 -14.33 16 25 C -0.11 -0.51 6.31 31.12 0.20 -0.31 16 26 C -0.13 -0.73 7.78 31.12 0.24 -0.48 16 27 C -0.13 -1.48 7.46 31.18 0.23 -1.25 16 28 H 0.09 0.10 8.14 -2.38 -0.02 0.09 16 29 H 0.09 0.45 6.09 -2.38 -0.01 0.43 16 30 H 0.10 0.01 6.24 -2.39 -0.01 0.00 16 31 H 0.16 2.38 4.21 -2.91 -0.01 2.37 16 32 H 0.12 3.32 7.52 -2.91 -0.02 3.30 16 33 H 0.17 3.22 6.16 -2.91 -0.02 3.21 16 34 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 35 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.12 5.22 5.62 -2.91 -0.02 5.20 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 39 H 0.15 -0.28 6.32 -2.39 -0.02 -0.30 16 40 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 41 H 0.07 0.60 8.13 -2.38 -0.02 0.58 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 Total: -1.00 -81.67 366.95 7.12 -74.54 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 1.06 Total: 16.81 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 6.05 Total: -23.01 kcal Atomic # 7 Polarization: -77.59 SS G_CDS: -1.75 Total: -79.34 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.26 Total: -32.38 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -81.67 7.12 -74.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066336154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.968 kcal (2) G-P(sol) polarization free energy of solvation -81.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds