Wall clock time and date at job start Tue Mar 31 2020 14:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00457 * 2 1 4 4 C 1.50707 * 109.46654 * 66.04795 * 3 2 1 5 5 C 1.38227 * 120.00040 * 269.72662 * 4 3 2 6 6 C 1.38240 * 120.00037 * 179.74805 * 5 4 3 7 7 C 1.38228 * 119.99543 * 0.54933 * 6 5 4 8 8 C 1.50700 * 119.99941 * 179.72481 * 7 6 5 9 9 F 1.39898 * 109.47484 * 269.97887 * 8 7 6 10 10 F 1.39908 * 109.47166 * 29.97957 * 8 7 6 11 11 F 1.39903 * 109.47284 * 149.97816 * 8 7 6 12 12 C 1.38238 * 120.00434 * 359.70722 * 7 6 5 13 13 C 1.38234 * 119.99543 * 90.00644 * 4 3 2 14 14 C 1.46907 * 110.99579 * 236.04723 * 2 1 3 15 15 C 1.52998 * 109.47112 * 199.48238 * 14 2 1 16 16 H 1.09004 * 109.47197 * 305.24348 * 15 14 2 17 17 C 1.47204 * 109.47005 * 65.23845 * 15 14 2 18 18 N 3.66849 * 124.21658 * 157.42541 * 2 1 3 19 19 C 1.53002 * 109.47179 * 185.23992 * 15 14 2 20 20 C 1.50698 * 109.46939 * 175.00056 * 19 15 14 21 21 H 1.08003 * 120.00109 * 0.02562 * 20 19 15 22 22 C 1.37878 * 120.00086 * 179.97438 * 20 19 15 23 23 N 1.31512 * 120.00477 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99554 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47377 * 89.99966 * 24 22 20 26 26 H 1.48508 * 109.46766 * 209.99605 * 24 22 20 27 27 H 1.48491 * 109.47444 * 329.99382 * 24 22 20 28 28 H 1.08994 * 109.47164 * 187.23535 * 1 2 3 29 29 H 1.09001 * 109.46525 * 307.23257 * 1 2 3 30 30 H 1.09000 * 109.46962 * 67.22965 * 1 2 3 31 31 H 1.09001 * 109.47611 * 186.04854 * 3 2 1 32 32 H 1.08997 * 109.46935 * 306.05179 * 3 2 1 33 33 H 1.08005 * 120.00194 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.99900 * 180.27496 * 6 5 4 35 35 H 1.07999 * 120.00111 * 179.97438 * 12 7 6 36 36 H 1.07999 * 120.00659 * 359.97438 * 13 4 3 37 37 H 1.09003 * 109.46948 * 79.48854 * 14 2 1 38 38 H 1.08994 * 109.47212 * 319.48366 * 14 2 1 39 39 H 1.08992 * 109.46905 * 294.99995 * 19 15 14 40 40 H 1.09001 * 109.47107 * 55.00487 * 19 15 14 41 41 H 0.96999 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0470 1.2986 5 6 0.4540 2.7537 1.4064 6 6 0.1227 3.3691 2.5991 7 6 0.9799 3.2872 3.6804 8 6 0.6217 3.9632 4.9787 9 9 1.1235 5.2691 4.9786 10 9 -0.7700 3.9984 5.1178 11 9 1.1790 3.2497 6.0453 12 6 2.1655 2.5849 3.5710 13 6 2.4941 1.9648 2.3800 14 6 1.9954 -0.7660 -1.1377 15 6 3.4477 -1.1589 -0.8598 16 1 4.0276 -0.2657 -0.6273 17 6 3.4952 -2.0858 0.2828 18 7 3.5319 -2.8011 1.1645 19 6 4.0367 -1.8421 -2.0956 20 6 5.5004 -2.1185 -1.8671 21 1 5.9640 -1.8356 -0.9336 22 6 6.2474 -2.7335 -2.8493 23 7 7.5246 -2.9752 -2.6498 24 14 5.4451 -3.2234 -4.4636 25 1 5.5536 -2.1018 -5.4308 26 1 6.1312 -4.4199 -5.0142 27 1 4.0130 -3.5382 -4.2292 28 1 -0.3633 -1.0194 0.1294 29 1 -0.3632 0.6218 0.8182 30 1 -0.3633 0.3977 -0.9476 31 1 3.0798 1.3444 -0.1083 32 1 1.5612 1.9273 -0.8308 33 1 -0.2137 2.8214 0.5601 34 1 -0.8037 3.9175 2.6846 35 1 2.8354 2.5213 4.4157 36 1 3.4204 1.4161 2.2946 37 1 1.9505 -0.1548 -2.0391 38 1 1.3962 -1.6656 -1.2784 39 1 3.5134 -2.7810 -2.2757 40 1 3.9210 -1.1897 -2.9612 41 1 8.0502 -3.4076 -3.3409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072589682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:03 Heat of formation + Delta-G solvation = -101.511546 kcal Electronic energy + Delta-G solvation = -26724.216681 eV Core-core repulsion = 22382.009255 eV Total energy + Delta-G solvation = -4342.207426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.41214 -47.92959 -47.87594 -40.01497 -38.03970 -35.84472 -33.77094 -32.74057 -31.70976 -31.37949 -28.19012 -27.91980 -25.55798 -24.20105 -23.18286 -22.07636 -21.48835 -20.95596 -18.76238 -18.70571 -18.61670 -17.03745 -16.93923 -16.10583 -15.87286 -15.26587 -15.02554 -14.85869 -14.73268 -14.56191 -14.45298 -14.33849 -14.13630 -14.04780 -14.03189 -13.70687 -13.32141 -13.17015 -12.95883 -12.61202 -12.46434 -12.20398 -12.10643 -11.93850 -11.80170 -11.47061 -11.36201 -11.29255 -11.21461 -10.77920 -10.43273 -9.98152 -9.80687 -9.38636 -9.32961 -9.30688 -8.65396 -8.40308 -6.14076 -4.15033 0.61759 1.00201 2.40401 3.13176 3.22318 3.31822 3.32121 3.45914 3.65557 3.75495 3.76366 3.97029 4.17552 4.34744 4.48401 4.50052 4.55887 4.74241 4.96068 5.01524 5.12106 5.20105 5.21037 5.28846 5.33792 5.44582 5.58318 5.60539 5.68165 5.79126 5.81405 5.86081 5.92628 6.12020 6.22950 6.25776 6.48628 6.86475 6.91890 6.93412 7.08775 7.59810 8.36834 8.51880 8.89439 9.45637 10.98995 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002424 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.071630 B =11550.670848 C =11962.811320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.539 5.539 3 C 0.081 3.919 4 C -0.038 4.038 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.189 4.189 8 C 0.509 3.491 9 F -0.178 7.178 10 F -0.179 7.179 11 F -0.177 7.177 12 C -0.070 4.070 13 C -0.096 4.096 14 C 0.059 3.941 15 C 0.022 3.978 16 H 0.104 0.896 17 C 0.253 3.747 18 N -0.470 5.470 19 C -0.006 4.006 20 C -0.528 4.528 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.896 5.896 24 Si 0.877 3.123 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.264 1.264 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.139 0.861 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.032 0.968 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.471 16.474 7.744 25.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.046 4.046 4 C -0.038 4.038 5 C -0.135 4.135 6 C -0.092 4.092 7 C -0.190 4.190 8 C 0.454 3.546 9 F -0.160 7.160 10 F -0.161 7.161 11 F -0.159 7.159 12 C -0.088 4.088 13 C -0.115 4.115 14 C -0.069 4.069 15 C 0.000 4.000 16 H 0.122 0.878 17 C -0.065 4.065 18 N -0.147 5.147 19 C -0.045 4.045 20 C -0.566 4.566 21 H 0.092 0.908 22 C -0.131 4.131 23 N -0.534 5.534 24 Si 0.704 3.296 25 H -0.201 1.201 26 H -0.213 1.213 27 H -0.189 1.189 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.106 15.092 9.453 24.693 hybrid contribution -0.552 0.438 -1.662 1.805 sum -17.658 15.530 7.791 24.773 Atomic orbital electron populations 1.22487 0.87308 1.02708 1.00335 1.61985 1.07919 1.12143 1.44202 1.21264 1.02062 0.88488 0.92831 1.20063 0.93568 0.94361 0.95833 1.21062 0.96858 0.98108 0.97517 1.20855 0.98497 0.97937 0.91879 1.19928 0.99630 1.06007 0.93443 1.18350 0.74350 0.76801 0.85054 1.93223 1.87292 1.38614 1.96835 1.93183 1.30114 1.96388 1.96372 1.93198 1.85216 1.78140 1.59309 1.20975 0.94611 0.94493 0.98707 1.21146 1.00497 0.98239 0.91591 1.22312 0.95373 0.98124 0.91140 1.18963 0.95241 0.95412 0.90394 0.87802 1.28677 0.91497 0.93151 0.93140 1.81011 1.10052 1.11061 1.12577 1.19645 0.97516 0.96052 0.91254 1.21013 0.91785 1.40170 1.03629 0.90762 1.24992 0.94655 0.94962 0.98485 1.69899 1.06709 1.42353 1.34467 0.86828 0.80176 0.78531 0.84077 1.20059 1.21302 1.18862 0.91255 0.91198 0.95416 0.88501 0.93060 0.85028 0.84923 0.84703 0.84316 0.92361 0.89994 0.95664 0.94969 0.92530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.25 60.06 0.56 0.74 16 2 N -0.54 -6.11 4.39 -244.37 -1.07 -7.19 16 3 C 0.08 0.78 4.95 -4.97 -0.02 0.75 16 4 C -0.04 -0.36 4.89 -104.62 -0.51 -0.87 16 5 C -0.12 -0.96 7.88 -39.58 -0.31 -1.27 16 6 C -0.07 -0.62 9.40 -39.58 -0.37 -0.99 16 7 C -0.19 -1.82 5.45 -104.63 -0.57 -2.39 16 8 C 0.51 4.97 3.36 36.01 0.12 5.09 16 9 F -0.18 -1.81 17.30 2.25 0.04 -1.77 16 10 F -0.18 -1.75 16.46 2.25 0.04 -1.72 16 11 F -0.18 -1.85 16.46 2.25 0.04 -1.81 16 12 C -0.07 -0.68 9.40 -39.58 -0.37 -1.06 16 13 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 14 C 0.06 0.74 4.36 -3.82 -0.02 0.72 16 15 C 0.02 0.36 2.26 -93.41 -0.21 0.15 16 16 H 0.10 1.61 6.64 -51.93 -0.34 1.26 16 17 C 0.25 5.00 13.67 -20.76 -0.28 4.71 16 18 N -0.47 -10.37 18.54 42.15 0.78 -9.59 16 19 C -0.01 -0.12 3.49 -27.88 -0.10 -0.21 16 20 C -0.53 -13.80 9.15 -34.44 -0.32 -14.11 16 21 H 0.07 2.14 7.84 -52.48 -0.41 1.73 16 22 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 23 N -0.90 -26.59 13.96 55.43 0.77 -25.82 16 24 Si 0.88 20.13 27.47 -169.99 -4.67 15.46 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 28 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 29 H 0.07 0.62 5.68 -51.93 -0.29 0.32 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.96 6.49 -51.93 -0.34 0.63 16 32 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 33 H 0.13 0.82 7.94 -52.48 -0.42 0.40 16 34 H 0.13 0.89 7.60 -52.49 -0.40 0.49 16 35 H 0.14 1.17 7.60 -52.49 -0.40 0.77 16 36 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 38 H 0.08 1.02 7.93 -51.93 -0.41 0.61 16 39 H 0.03 0.53 7.20 -51.93 -0.37 0.15 16 40 H 0.03 0.60 7.57 -51.93 -0.39 0.21 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -31.16 359.23 -6.60 -37.77 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -5.05 Total: -2.51 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.89 Total: -8.23 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.48 Total: -42.60 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.30 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.16 -6.60 -37.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.744 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds