Wall clock time and date at job start Tue Mar 31 2020 14:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46899 * 111.00457 * 2 1 4 4 C 1.50707 * 109.46654 * 66.04795 * 3 2 1 5 5 C 1.38227 * 120.00040 * 269.72662 * 4 3 2 6 6 C 1.38240 * 120.00037 * 179.74805 * 5 4 3 7 7 C 1.38228 * 119.99543 * 0.54933 * 6 5 4 8 8 C 1.50700 * 119.99941 * 179.72481 * 7 6 5 9 9 F 1.39898 * 109.47484 * 269.97887 * 8 7 6 10 10 F 1.39908 * 109.47166 * 29.97957 * 8 7 6 11 11 F 1.39903 * 109.47284 * 149.97816 * 8 7 6 12 12 C 1.38238 * 120.00434 * 359.70722 * 7 6 5 13 13 C 1.38234 * 119.99543 * 90.00644 * 4 3 2 14 14 C 1.46907 * 110.99579 * 236.04723 * 2 1 3 15 15 C 1.52998 * 109.47112 * 199.48238 * 14 2 1 16 16 H 1.09004 * 109.47197 * 305.24348 * 15 14 2 17 17 C 1.47204 * 109.47005 * 65.23845 * 15 14 2 18 18 N 3.66849 * 124.21658 * 157.42541 * 2 1 3 19 19 C 1.53002 * 109.47179 * 185.23992 * 15 14 2 20 20 C 1.50698 * 109.46939 * 175.00056 * 19 15 14 21 21 H 1.08003 * 120.00109 * 0.02562 * 20 19 15 22 22 C 1.37878 * 120.00086 * 179.97438 * 20 19 15 23 23 N 1.31512 * 120.00477 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99554 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47377 * 89.99966 * 24 22 20 26 26 H 1.48508 * 109.46766 * 209.99605 * 24 22 20 27 27 H 1.48491 * 109.47444 * 329.99382 * 24 22 20 28 28 H 1.08994 * 109.47164 * 187.23535 * 1 2 3 29 29 H 1.09001 * 109.46525 * 307.23257 * 1 2 3 30 30 H 1.09000 * 109.46962 * 67.22965 * 1 2 3 31 31 H 1.09001 * 109.47611 * 186.04854 * 3 2 1 32 32 H 1.08997 * 109.46935 * 306.05179 * 3 2 1 33 33 H 1.08005 * 120.00194 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.99900 * 180.27496 * 6 5 4 35 35 H 1.07999 * 120.00111 * 179.97438 * 12 7 6 36 36 H 1.07999 * 120.00659 * 359.97438 * 13 4 3 37 37 H 1.09003 * 109.46948 * 79.48854 * 14 2 1 38 38 H 1.08994 * 109.47212 * 319.48366 * 14 2 1 39 39 H 1.08992 * 109.46905 * 294.99995 * 19 15 14 40 40 H 1.09001 * 109.47107 * 55.00487 * 19 15 14 41 41 H 0.96999 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6371 2.0470 1.2986 5 6 0.4540 2.7537 1.4064 6 6 0.1227 3.3691 2.5991 7 6 0.9799 3.2872 3.6804 8 6 0.6217 3.9632 4.9787 9 9 1.1235 5.2691 4.9786 10 9 -0.7700 3.9984 5.1178 11 9 1.1790 3.2497 6.0453 12 6 2.1655 2.5849 3.5710 13 6 2.4941 1.9648 2.3800 14 6 1.9954 -0.7660 -1.1377 15 6 3.4477 -1.1589 -0.8598 16 1 4.0276 -0.2657 -0.6273 17 6 3.4952 -2.0858 0.2828 18 7 3.5319 -2.8011 1.1645 19 6 4.0367 -1.8421 -2.0956 20 6 5.5004 -2.1185 -1.8671 21 1 5.9640 -1.8356 -0.9336 22 6 6.2474 -2.7335 -2.8493 23 7 7.5246 -2.9752 -2.6498 24 14 5.4451 -3.2234 -4.4636 25 1 5.5536 -2.1018 -5.4308 26 1 6.1312 -4.4199 -5.0142 27 1 4.0130 -3.5382 -4.2292 28 1 -0.3633 -1.0194 0.1294 29 1 -0.3632 0.6218 0.8182 30 1 -0.3633 0.3977 -0.9476 31 1 3.0798 1.3444 -0.1083 32 1 1.5612 1.9273 -0.8308 33 1 -0.2137 2.8214 0.5601 34 1 -0.8037 3.9175 2.6846 35 1 2.8354 2.5213 4.4157 36 1 3.4204 1.4161 2.2946 37 1 1.9505 -0.1548 -2.0391 38 1 1.3962 -1.6656 -1.2784 39 1 3.5134 -2.7810 -2.2757 40 1 3.9210 -1.1897 -2.9612 41 1 8.0502 -3.4076 -3.3409 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072589682.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:02 Heat of formation + Delta-G solvation = -119.084486 kcal Electronic energy + Delta-G solvation = -26724.978701 eV Core-core repulsion = 22382.009255 eV Total energy + Delta-G solvation = -4342.969446 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.19808 -48.71918 -48.66658 -40.73181 -39.08217 -37.18900 -35.45079 -34.00849 -33.02308 -32.08735 -29.39683 -28.89716 -26.52958 -25.28607 -23.88190 -23.22253 -22.93330 -21.73578 -19.53729 -19.45126 -19.39593 -18.89229 -18.32137 -17.01795 -16.68547 -16.28330 -16.03476 -15.77091 -15.68753 -15.51875 -15.36417 -15.20688 -15.12928 -14.91435 -14.83177 -14.75752 -14.50121 -14.37082 -14.16316 -13.90667 -13.66732 -13.36293 -13.19999 -13.06863 -12.82503 -12.71978 -12.64421 -12.32746 -12.13989 -12.05943 -11.93323 -11.61501 -11.46005 -11.20975 -10.70715 -10.06239 -10.00539 -9.16721 -8.22349 -6.27854 -0.09562 0.31710 1.44054 1.47767 1.57533 1.64193 2.10001 2.17734 2.41580 2.43171 2.70889 3.00435 3.12388 3.15666 3.37660 3.41134 3.77598 3.82477 3.91227 4.14123 4.26635 4.34535 4.37984 4.48644 4.59045 4.67006 4.69681 4.79042 4.83813 4.92622 4.95936 4.99404 5.14498 5.18821 5.22040 5.27042 5.48462 5.55083 5.66644 5.80217 6.09614 6.18985 6.29622 6.80375 6.95837 7.36749 8.94672 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023095 B = 0.002424 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.071630 B =11550.670848 C =11962.811320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.560 5.560 3 C 0.081 3.919 4 C -0.043 4.043 5 C -0.109 4.109 6 C -0.073 4.073 7 C -0.198 4.198 8 C 0.511 3.489 9 F -0.181 7.181 10 F -0.178 7.178 11 F -0.184 7.184 12 C -0.081 4.081 13 C -0.113 4.113 14 C 0.070 3.930 15 C 0.026 3.974 16 H 0.113 0.887 17 C 0.264 3.736 18 N -0.520 5.520 19 C -0.004 4.004 20 C -0.529 4.529 21 H 0.028 0.972 22 C 0.001 3.999 23 N -0.956 5.956 24 Si 0.948 3.052 25 H -0.256 1.256 26 H -0.298 1.298 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.065 0.935 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.656 17.812 5.540 27.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.284 5.284 3 C -0.046 4.046 4 C -0.044 4.044 5 C -0.128 4.128 6 C -0.091 4.091 7 C -0.199 4.199 8 C 0.457 3.543 9 F -0.163 7.163 10 F -0.160 7.160 11 F -0.165 7.165 12 C -0.099 4.099 13 C -0.132 4.132 14 C -0.059 4.059 15 C 0.004 3.996 16 H 0.131 0.869 17 C -0.052 4.052 18 N -0.197 5.197 19 C -0.043 4.043 20 C -0.567 4.567 21 H 0.046 0.954 22 C -0.195 4.195 23 N -0.597 5.597 24 Si 0.771 3.229 25 H -0.181 1.181 26 H -0.225 1.225 27 H -0.158 1.158 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.177 0.823 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.327 16.455 7.265 27.143 hybrid contribution 0.487 0.070 -0.851 0.982 sum -19.840 16.526 6.415 26.606 Atomic orbital electron populations 1.22485 0.85802 1.02553 1.01714 1.61846 1.09337 1.13138 1.44054 1.21289 1.01727 0.87953 0.93583 1.20156 0.93989 0.94674 0.95539 1.21325 0.96440 0.96844 0.98142 1.21149 0.98854 0.97612 0.91499 1.20011 0.99903 1.06285 0.93751 1.18378 0.74290 0.76621 0.85042 1.93215 1.87353 1.38854 1.96845 1.93181 1.30013 1.96380 1.96378 1.93183 1.85347 1.78291 1.59705 1.21045 0.95089 0.94920 0.98833 1.21187 1.00748 0.98909 0.92349 1.22163 0.91966 0.99095 0.92652 1.19105 0.98629 0.94418 0.87475 0.86896 1.29453 0.89949 0.92635 0.93144 1.81006 1.11911 1.12616 1.14177 1.19596 0.93480 0.97174 0.94010 1.21414 0.94918 1.38850 1.01542 0.95375 1.26056 0.95067 0.95238 1.03141 1.70093 1.08939 1.44525 1.36115 0.85692 0.80250 0.78121 0.78817 1.18055 1.22523 1.15840 0.92087 0.90744 0.93163 0.89388 0.90554 0.82257 0.82958 0.84578 0.85306 0.89317 0.89734 0.95515 0.91735 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.25 127.69 1.18 1.51 16 2 N -0.56 -11.01 4.39 -927.04 -4.07 -15.09 16 3 C 0.08 1.32 4.95 85.56 0.42 1.75 16 4 C -0.04 -0.73 4.89 -19.87 -0.10 -0.83 16 5 C -0.11 -1.44 7.88 22.27 0.18 -1.27 16 6 C -0.07 -1.06 9.40 22.27 0.21 -0.85 16 7 C -0.20 -3.60 5.45 -19.87 -0.11 -3.71 16 8 C 0.51 9.59 3.36 71.24 0.24 9.83 16 9 F -0.18 -3.55 17.30 44.97 0.78 -2.77 16 10 F -0.18 -3.26 16.46 44.97 0.74 -2.52 16 11 F -0.18 -3.81 16.46 44.97 0.74 -3.07 16 12 C -0.08 -1.58 9.40 22.27 0.21 -1.37 16 13 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 14 C 0.07 1.49 4.36 86.30 0.38 1.86 16 15 C 0.03 0.80 2.26 -12.60 -0.03 0.77 16 16 H 0.11 3.35 6.64 -2.39 -0.02 3.34 16 17 C 0.26 10.44 13.67 89.44 1.22 11.66 16 18 N -0.52 -23.33 18.54 20.01 0.37 -22.96 16 19 C 0.00 -0.14 3.49 29.85 0.10 -0.03 16 20 C -0.53 -27.84 9.15 25.60 0.23 -27.61 16 21 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 22 C 0.00 0.08 5.47 84.66 0.46 0.54 16 23 N -0.96 -58.59 13.96 21.45 0.30 -58.29 16 24 Si 0.95 40.41 27.47 68.60 1.88 42.30 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.30 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.24 -8.88 6.54 99.48 0.65 -8.23 16 28 H 0.06 1.02 8.13 -2.39 -0.02 1.00 16 29 H 0.07 1.05 5.68 -2.39 -0.01 1.04 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 1.58 6.49 -2.39 -0.02 1.56 16 32 H 0.08 0.88 8.06 -2.39 -0.02 0.86 16 33 H 0.16 1.20 7.94 -2.91 -0.02 1.18 16 34 H 0.15 1.57 7.60 -2.91 -0.02 1.54 16 35 H 0.14 2.46 7.60 -2.91 -0.02 2.44 16 36 H 0.13 2.74 8.06 -2.91 -0.02 2.71 16 37 H 0.09 1.40 8.00 -2.39 -0.02 1.38 16 38 H 0.08 1.79 7.93 -2.39 -0.02 1.77 16 39 H 0.03 1.03 7.20 -2.39 -0.02 1.01 16 40 H 0.06 2.12 7.57 -2.39 -0.02 2.11 16 41 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -70.33 359.23 6.57 -63.77 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.00 Total: 8.44 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 4.82 Total: -9.80 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.40 Total: -96.33 kcal Atomic # 9 Polarization: -10.62 SS G_CDS: 2.26 Total: -8.36 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 1.88 Total: 42.30 kcal Total: -70.33 6.57 -63.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072589682.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.317 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds