Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 117.00012 * 2 1 4 4 C 1.38705 * 120.15064 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.08609 * 179.97438 * 4 3 2 6 6 C 1.38547 * 120.38836 * 0.02562 * 5 4 3 7 7 C 1.37789 * 120.30242 * 359.97438 * 6 5 4 8 8 C 1.39706 * 119.90649 * 359.76252 * 7 6 5 9 9 C 1.47528 * 120.19224 * 180.25970 * 8 7 6 10 10 O 1.21593 * 120.00087 * 126.02246 * 9 8 7 11 11 N 1.34780 * 120.00073 * 306.02060 * 9 8 7 12 12 C 1.46502 * 119.99454 * 4.74582 * 11 9 8 13 13 C 1.50701 * 109.46981 * 95.80974 * 12 11 9 14 14 H 1.08002 * 119.99646 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99868 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99704 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47078 * 60.00024 * 17 15 13 19 19 H 1.48497 * 109.46666 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47040 * 299.99675 * 17 15 13 21 21 C 1.46496 * 120.00217 * 184.74770 * 11 9 8 22 22 C 1.50701 * 109.47132 * 89.99806 * 21 11 9 23 23 C 1.38671 * 120.42143 * 269.72042 * 22 21 11 24 24 C 1.38631 * 118.42187 * 179.78067 * 23 22 21 25 25 C 1.38225 * 119.15953 * 0.51867 * 24 23 22 26 26 N 1.31858 * 120.76694 * 359.72091 * 25 24 23 27 27 C 1.31884 * 121.72060 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47487 * 299.99610 * 1 2 3 29 29 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46948 * 59.99982 * 1 2 3 31 31 H 1.08000 * 119.95888 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.80743 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.85065 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.04365 * 180.02562 * 7 6 5 35 35 H 1.09009 * 109.46870 * 215.80394 * 12 11 9 36 36 H 1.08991 * 109.47302 * 335.80534 * 12 11 9 37 37 H 0.96997 * 120.00008 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47382 * 209.99467 * 21 11 9 39 39 H 1.08997 * 109.47452 * 330.00132 * 21 11 9 40 40 H 1.07999 * 120.78985 * 0.02869 * 23 22 21 41 41 H 1.07999 * 120.41541 * 180.21811 * 24 23 22 42 42 H 1.08004 * 119.61515 * 179.74771 * 25 24 23 43 43 H 1.08001 * 119.61861 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3037 3.6836 0.0005 7 6 4.0668 2.5363 0.0011 8 6 3.4441 1.2857 0.0061 9 6 4.2550 0.0532 0.0125 10 8 4.0709 -0.7912 0.8678 11 7 5.1997 -0.1368 -0.9298 12 6 5.4933 0.9238 -1.8969 13 6 6.6716 1.7305 -1.4155 14 1 7.1533 1.4787 -0.4822 15 6 7.1346 2.7901 -2.1664 16 7 6.5483 3.0964 -3.3030 17 14 8.5948 3.7906 -1.5692 18 1 9.7784 2.9046 -1.4307 19 1 8.8931 4.8647 -2.5502 20 1 8.2737 4.3973 -0.2524 21 6 5.9330 -1.4037 -0.9868 22 6 5.2015 -2.3675 -1.8852 23 6 4.2425 -3.2230 -1.3644 24 6 3.5917 -4.0894 -2.2291 25 6 3.9257 -4.0794 -3.5703 26 7 4.8467 -3.2552 -4.0299 27 6 5.4823 -2.4142 -3.2375 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 0.2138 2.3195 -0.0014 32 1 1.3303 4.5078 -0.0008 33 1 3.7861 4.6499 0.0005 34 1 5.1446 2.6038 0.0019 35 1 5.7284 0.4788 -2.8639 36 1 4.6245 1.5741 -1.9978 37 1 6.8738 3.8420 -3.8312 38 1 6.9335 -1.2270 -1.3817 39 1 6.0072 -1.8261 0.0152 40 1 4.0053 -3.2118 -0.3108 41 1 2.8368 -4.7670 -1.8585 42 1 3.4262 -4.7541 -4.2498 43 1 6.2311 -1.7543 -3.6501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072621337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -4.389948 kcal Electronic energy + Delta-G solvation = -28063.548757 eV Core-core repulsion = 24267.409580 eV Total energy + Delta-G solvation = -3796.139177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26419 -39.78178 -38.44231 -36.86649 -35.15991 -33.12160 -32.13502 -31.48749 -30.54646 -29.73425 -27.55704 -27.16659 -26.02934 -23.45596 -23.23872 -22.64377 -21.76566 -21.46787 -19.05064 -17.56610 -16.90890 -16.73695 -16.38010 -16.03980 -15.78191 -15.58617 -15.30760 -14.97394 -14.75044 -14.36374 -13.98405 -13.79110 -13.54343 -13.21637 -12.87370 -12.75497 -12.66130 -12.33700 -12.22201 -11.95593 -11.74533 -11.52987 -11.21645 -11.12961 -11.00719 -10.91667 -10.75188 -10.64709 -10.22758 -9.86050 -9.53176 -9.18899 -9.16869 -8.69440 -8.65708 -8.38202 -7.87773 -7.74349 -6.22470 -4.30997 1.36198 1.51488 1.59143 1.85247 3.20498 3.26912 3.28510 3.42237 3.50082 3.80955 4.19883 4.24474 4.36378 4.72449 4.99975 5.07122 5.08393 5.18005 5.21853 5.22034 5.23838 5.31492 5.37933 5.49727 5.52318 5.62938 5.73446 5.78129 5.95079 6.08013 6.12652 6.22918 6.38315 6.41350 6.55830 6.64664 6.73234 6.75568 6.97192 6.99872 7.20547 7.23982 7.49711 7.66524 7.70479 8.00614 8.24401 8.29360 8.74098 8.98714 9.36003 10.83351 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.006379 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.893153 B = 4388.473784 C = 6879.670461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.162 3.838 4 C -0.229 4.229 5 C -0.068 4.068 6 C -0.165 4.165 7 C -0.024 4.024 8 C -0.153 4.153 9 C 0.572 3.428 10 O -0.559 6.559 11 N -0.586 5.586 12 C 0.234 3.766 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.071 3.929 16 N -0.882 5.882 17 Si 0.892 3.108 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.161 3.839 22 C -0.144 4.144 23 C -0.054 4.054 24 C -0.181 4.181 25 C 0.088 3.912 26 N -0.490 5.490 27 C 0.115 3.885 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.164 0.836 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.267 0.733 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.149 0.851 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.248 -5.139 3.616 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.115 3.885 4 C -0.247 4.247 5 C -0.086 4.086 6 C -0.183 4.183 7 C -0.042 4.042 8 C -0.157 4.157 9 C 0.360 3.640 10 O -0.439 6.439 11 N -0.316 5.316 12 C 0.114 3.886 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.720 3.280 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.037 3.963 22 C -0.147 4.147 23 C -0.081 4.081 24 C -0.201 4.201 25 C -0.069 4.069 26 N -0.199 5.199 27 C -0.042 4.042 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.182 0.818 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.166 0.834 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.034 -5.648 2.975 11.062 hybrid contribution 0.199 0.947 0.900 1.322 sum -8.835 -4.701 3.875 10.732 Atomic orbital electron populations 1.23014 0.79143 1.03549 1.00988 1.86150 1.20623 1.26729 1.88019 1.18925 0.90883 0.84285 0.94374 1.20992 0.99447 0.92219 1.12077 1.20993 0.94862 0.96548 0.96232 1.21012 0.93423 0.98840 1.05044 1.21951 1.02818 0.89609 0.89782 1.19208 0.90226 0.94989 1.11239 1.17996 0.79519 0.85443 0.81030 1.90659 1.69505 1.45766 1.38010 1.48139 1.35947 1.15366 1.32144 1.19568 0.97172 0.84608 0.87244 1.21418 1.15084 1.14204 1.07538 0.91852 1.24926 0.96771 0.97053 0.94641 1.69920 1.40480 1.28683 1.12795 0.86641 0.82910 0.79802 0.78689 1.20037 1.21132 1.19938 1.20118 0.94596 0.82848 0.98692 1.21443 0.98900 0.98000 0.96406 1.21650 0.92947 0.92661 1.00805 1.22078 1.01779 1.01150 0.95088 1.22673 0.94228 0.96315 0.93663 1.67699 1.07576 1.05177 1.39406 1.22804 0.97121 0.94640 0.89639 0.92846 0.88614 0.92911 0.85727 0.86174 0.85731 0.81841 0.94877 0.93656 0.92339 0.88863 0.89715 0.84547 0.85351 0.83383 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.30 -5.40 9.70 -21.77 -0.21 -5.61 16 3 C 0.16 3.00 6.69 -38.69 -0.26 2.74 16 4 C -0.23 -3.53 9.03 -39.48 -0.36 -3.88 16 5 C -0.07 -1.02 10.03 -39.53 -0.40 -1.41 16 6 C -0.16 -2.81 10.02 -39.63 -0.40 -3.21 16 7 C -0.02 -0.47 7.67 -39.20 -0.30 -0.77 16 8 C -0.15 -3.17 4.74 -104.85 -0.50 -3.66 16 9 C 0.57 12.52 6.83 -12.47 -0.09 12.44 16 10 O -0.56 -12.93 16.20 2.18 0.04 -12.89 16 11 N -0.59 -12.39 2.44 -177.67 -0.43 -12.82 16 12 C 0.23 5.44 4.68 -5.19 -0.02 5.41 16 13 C -0.54 -13.23 7.03 -34.44 -0.24 -13.48 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.88 -23.27 13.29 55.43 0.74 -22.53 16 17 Si 0.89 19.51 29.54 -169.99 -5.02 14.48 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.16 2.97 5.61 -5.20 -0.03 2.94 16 22 C -0.14 -2.50 5.48 -104.48 -0.57 -3.07 16 23 C -0.05 -0.87 9.86 -39.28 -0.39 -1.26 16 24 C -0.18 -2.52 10.11 -39.44 -0.40 -2.92 16 25 C 0.09 1.27 11.18 -17.55 -0.20 1.07 16 26 N -0.49 -8.35 10.36 -13.25 -0.14 -8.48 16 27 C 0.12 2.00 10.86 -17.55 -0.19 1.81 16 28 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.56 7.66 -51.93 -0.40 0.16 16 31 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 32 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 34 H 0.16 3.53 5.40 -52.49 -0.28 3.25 16 35 H 0.03 0.82 8.12 -51.92 -0.42 0.39 16 36 H 0.05 1.13 5.65 -51.93 -0.29 0.84 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.09 1.64 8.02 -51.93 -0.42 1.22 16 39 H 0.08 1.53 7.31 -51.93 -0.38 1.15 16 40 H 0.14 2.23 7.94 -52.49 -0.42 1.82 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -30.10 366.56 -8.37 -38.47 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -5.42 Total: 8.12 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.44 Total: -4.26 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.17 Total: -43.84 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.18 Total: -18.50 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.10 -8.37 -38.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.079 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds