Wall clock time and date at job start Tue Mar 31 2020 14:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35652 * 117.00012 * 2 1 4 4 C 1.38705 * 120.15064 * 359.97438 * 3 2 1 5 5 C 1.38055 * 120.08609 * 179.97438 * 4 3 2 6 6 C 1.38547 * 120.38836 * 0.02562 * 5 4 3 7 7 C 1.37789 * 120.30242 * 359.97438 * 6 5 4 8 8 C 1.39706 * 119.90649 * 359.76252 * 7 6 5 9 9 C 1.47528 * 120.19224 * 180.25970 * 8 7 6 10 10 O 1.21593 * 120.00087 * 126.02246 * 9 8 7 11 11 N 1.34780 * 120.00073 * 306.02060 * 9 8 7 12 12 C 1.46502 * 119.99454 * 4.74582 * 11 9 8 13 13 C 1.50701 * 109.46981 * 95.80974 * 12 11 9 14 14 H 1.08002 * 119.99646 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99925 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99868 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99704 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47078 * 60.00024 * 17 15 13 19 19 H 1.48497 * 109.46666 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47040 * 299.99675 * 17 15 13 21 21 C 1.46496 * 120.00217 * 184.74770 * 11 9 8 22 22 C 1.50701 * 109.47132 * 89.99806 * 21 11 9 23 23 C 1.38671 * 120.42143 * 269.72042 * 22 21 11 24 24 C 1.38631 * 118.42187 * 179.78067 * 23 22 21 25 25 C 1.38225 * 119.15953 * 0.51867 * 24 23 22 26 26 N 1.31858 * 120.76694 * 359.72091 * 25 24 23 27 27 C 1.31884 * 121.72060 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47487 * 299.99610 * 1 2 3 29 29 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46948 * 59.99982 * 1 2 3 31 31 H 1.08000 * 119.95888 * 359.97438 * 4 3 2 32 32 H 1.08007 * 119.80743 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.85065 * 179.97438 * 6 5 4 34 34 H 1.07996 * 120.04365 * 180.02562 * 7 6 5 35 35 H 1.09009 * 109.46870 * 215.80394 * 12 11 9 36 36 H 1.08991 * 109.47302 * 335.80534 * 12 11 9 37 37 H 0.96997 * 120.00008 * 179.97438 * 16 15 13 38 38 H 1.08998 * 109.47382 * 209.99467 * 21 11 9 39 39 H 1.08997 * 109.47452 * 330.00132 * 21 11 9 40 40 H 1.07999 * 120.78985 * 0.02869 * 23 22 21 41 41 H 1.07999 * 120.41541 * 180.21811 * 24 23 22 42 42 H 1.08004 * 119.61515 * 179.74771 * 25 24 23 43 43 H 1.08001 * 119.61861 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3037 3.6836 0.0005 7 6 4.0668 2.5363 0.0011 8 6 3.4441 1.2857 0.0061 9 6 4.2550 0.0532 0.0125 10 8 4.0709 -0.7912 0.8678 11 7 5.1997 -0.1368 -0.9298 12 6 5.4933 0.9238 -1.8969 13 6 6.6716 1.7305 -1.4155 14 1 7.1533 1.4787 -0.4822 15 6 7.1346 2.7901 -2.1664 16 7 6.5483 3.0964 -3.3030 17 14 8.5948 3.7906 -1.5692 18 1 9.7784 2.9046 -1.4307 19 1 8.8931 4.8647 -2.5502 20 1 8.2737 4.3973 -0.2524 21 6 5.9330 -1.4037 -0.9868 22 6 5.2015 -2.3675 -1.8852 23 6 4.2425 -3.2230 -1.3644 24 6 3.5917 -4.0894 -2.2291 25 6 3.9257 -4.0794 -3.5703 26 7 4.8467 -3.2552 -4.0299 27 6 5.4823 -2.4142 -3.2375 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 0.2138 2.3195 -0.0014 32 1 1.3303 4.5078 -0.0008 33 1 3.7861 4.6499 0.0005 34 1 5.1446 2.6038 0.0019 35 1 5.7284 0.4788 -2.8639 36 1 4.6245 1.5741 -1.9978 37 1 6.8738 3.8420 -3.8312 38 1 6.9335 -1.2270 -1.3817 39 1 6.0072 -1.8261 0.0152 40 1 4.0053 -3.2118 -0.3108 41 1 2.8368 -4.7670 -1.8585 42 1 3.4262 -4.7541 -4.2498 43 1 6.2311 -1.7543 -3.6501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072621337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:51 Heat of formation + Delta-G solvation = -21.068819 kcal Electronic energy + Delta-G solvation = -28064.272007 eV Core-core repulsion = 24267.409580 eV Total energy + Delta-G solvation = -3796.862427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68741 -41.04888 -39.92560 -38.18089 -36.86332 -34.84754 -33.67168 -32.78667 -31.87999 -31.02940 -29.34854 -28.25959 -27.47716 -25.14517 -24.54693 -24.17588 -23.07215 -22.79213 -20.56613 -18.89673 -18.66341 -18.17037 -17.87037 -17.51113 -17.10567 -16.93848 -16.56996 -16.41075 -16.34489 -15.81717 -15.35884 -15.20169 -14.81431 -14.50913 -14.35725 -14.22290 -14.08593 -13.91679 -13.60476 -13.36052 -13.20333 -13.00665 -12.76124 -12.65337 -12.47679 -12.42309 -12.16306 -11.98883 -11.89487 -11.73076 -10.94013 -10.69482 -10.56746 -10.47715 -9.98126 -9.81323 -9.50936 -9.15863 -8.16840 -6.31165 0.10483 0.15531 0.31864 0.51793 1.45073 1.46661 1.53594 1.80917 2.27251 2.35739 2.45763 2.86447 2.95098 3.12840 3.52469 3.65988 3.87048 3.90124 3.97807 4.07801 4.09046 4.13636 4.29903 4.38546 4.40893 4.48193 4.53635 4.66373 4.67894 4.71642 4.73090 4.84100 4.88830 5.05328 5.17577 5.23919 5.26792 5.37056 5.43840 5.62786 5.67421 5.76379 5.80011 5.88494 6.06977 6.42957 6.54481 6.81005 6.99381 7.27042 7.40903 8.88677 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008319 B = 0.006379 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.893153 B = 4388.473784 C = 6879.670461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.151 3.849 4 C -0.220 4.220 5 C -0.054 4.054 6 C -0.174 4.174 7 C -0.044 4.044 8 C -0.191 4.191 9 C 0.567 3.433 10 O -0.580 6.580 11 N -0.588 5.588 12 C 0.256 3.744 13 C -0.543 4.543 14 H 0.056 0.944 15 C 0.032 3.968 16 N -0.913 5.913 17 Si 0.950 3.050 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.268 1.268 21 C 0.161 3.839 22 C -0.157 4.157 23 C -0.064 4.064 24 C -0.167 4.167 25 C 0.090 3.910 26 N -0.510 5.510 27 C 0.101 3.899 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.013 0.987 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.167 0.833 42 H 0.188 0.812 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.617 -5.011 3.806 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.105 3.895 4 C -0.238 4.238 5 C -0.072 4.072 6 C -0.192 4.192 7 C -0.063 4.063 8 C -0.195 4.195 9 C 0.357 3.643 10 O -0.462 6.462 11 N -0.317 5.317 12 C 0.135 3.865 13 C -0.581 4.581 14 H 0.075 0.925 15 C -0.169 4.169 16 N -0.551 5.551 17 Si 0.775 3.225 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.192 1.192 21 C 0.038 3.962 22 C -0.160 4.160 23 C -0.091 4.091 24 C -0.187 4.187 25 C -0.067 4.067 26 N -0.219 5.219 27 C -0.055 4.055 28 H 0.091 0.909 29 H 0.132 0.868 30 H 0.086 0.914 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.157 0.843 34 H 0.154 0.846 35 H 0.031 0.969 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.149 0.851 41 H 0.185 0.815 42 H 0.205 0.795 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.397 -5.530 3.172 13.059 hybrid contribution 0.785 0.819 0.850 1.417 sum -10.612 -4.711 4.022 12.288 Atomic orbital electron populations 1.23391 0.76187 1.05481 1.02604 1.86104 1.23768 1.26834 1.87910 1.19125 0.90383 0.85734 0.94296 1.21440 1.01228 0.91094 1.10045 1.21472 0.94059 0.98166 0.93457 1.21259 0.94738 0.98342 1.04902 1.21734 1.01820 0.90771 0.91930 1.19295 0.91671 0.94412 1.14122 1.18338 0.79433 0.85923 0.80587 1.90612 1.70190 1.46779 1.38667 1.48132 1.36194 1.15765 1.31617 1.19133 0.96075 0.84561 0.86725 1.21491 1.15109 1.14384 1.07098 0.92545 1.25551 0.98932 0.97838 0.94622 1.70021 1.41895 1.29308 1.13848 0.85727 0.79927 0.78412 0.78386 1.19902 1.20869 1.19247 1.20168 0.94681 0.82284 0.99060 1.21277 0.99913 0.98572 0.96205 1.21730 0.93094 0.93216 1.01037 1.22453 1.01381 1.00326 0.94503 1.23359 0.93040 0.95641 0.94648 1.67714 1.08599 1.05818 1.39728 1.22690 0.97736 0.95345 0.89748 0.90928 0.86777 0.91376 0.81839 0.81724 0.84297 0.84600 0.96886 0.95416 0.92315 0.88919 0.89803 0.85122 0.81513 0.79467 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -11.61 9.70 -86.70 -0.84 -12.45 16 3 C 0.15 5.53 6.69 22.84 0.15 5.69 16 4 C -0.22 -6.15 9.03 22.34 0.20 -5.95 16 5 C -0.05 -1.44 10.03 22.30 0.22 -1.22 16 6 C -0.17 -5.82 10.02 22.24 0.22 -5.59 16 7 C -0.04 -1.82 7.67 22.52 0.17 -1.65 16 8 C -0.19 -8.18 4.74 -20.01 -0.09 -8.27 16 9 C 0.57 26.09 6.83 86.69 0.59 26.68 16 10 O -0.58 -27.98 16.20 -1.04 -0.02 -28.00 16 11 N -0.59 -26.34 2.44 -834.28 -2.04 -28.38 16 12 C 0.26 12.60 4.68 85.63 0.40 13.00 16 13 C -0.54 -27.58 7.03 25.60 0.18 -27.40 16 14 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 15 C 0.03 1.64 5.46 84.66 0.46 2.10 16 16 N -0.91 -49.39 13.29 21.45 0.28 -49.11 16 17 Si 0.95 40.62 29.54 68.60 2.03 42.65 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 C 0.16 6.31 5.61 85.63 0.48 6.79 16 22 C -0.16 -5.64 5.48 -19.77 -0.11 -5.75 16 23 C -0.06 -2.07 9.86 22.47 0.22 -1.85 16 24 C -0.17 -4.29 10.11 22.36 0.23 -4.06 16 25 C 0.09 2.39 11.18 84.69 0.95 3.34 16 26 N -0.51 -17.19 10.36 -195.83 -2.03 -19.22 16 27 C 0.10 3.66 10.86 84.67 0.92 4.58 16 28 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.92 16 30 H 0.07 1.22 7.66 -2.38 -0.02 1.20 16 31 H 0.16 3.22 6.30 -2.91 -0.02 3.20 16 32 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 33 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.14 6.24 5.40 -2.91 -0.02 6.22 16 35 H 0.01 0.69 8.12 -2.38 -0.02 0.67 16 36 H 0.03 1.47 5.65 -2.39 -0.01 1.46 16 37 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 38 H 0.09 3.52 8.02 -2.39 -0.02 3.50 16 39 H 0.08 3.23 7.31 -2.39 -0.02 3.22 16 40 H 0.13 4.35 7.94 -2.91 -0.02 4.32 16 41 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.19 3.41 8.06 -2.91 -0.02 3.38 16 43 H 0.15 5.42 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -68.24 366.56 4.73 -63.51 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: 1.03 Total: 29.07 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: 6.31 Total: 1.92 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.78 Total: -96.71 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.86 Total: -40.45 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -68.24 4.73 -63.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072621337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.445 kcal (2) G-P(sol) polarization free energy of solvation -68.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds