Wall clock time and date at job start Tue Mar 31 2020 14:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99588 * 2 1 4 4 C 1.50701 * 109.47224 * 291.48548 * 3 2 1 5 5 C 1.38258 * 119.99715 * 104.09710 * 4 3 2 6 6 C 1.38216 * 119.99469 * 180.27414 * 5 4 3 7 7 C 1.38254 * 119.99927 * 359.74841 * 6 5 4 8 8 C 1.38212 * 120.00570 * 359.97438 * 7 6 5 9 9 C 1.38209 * 119.99912 * 283.84555 * 4 3 2 10 10 C 1.50701 * 120.00167 * 359.97438 * 9 4 3 11 11 F 1.39901 * 109.47272 * 178.90429 * 10 9 4 12 12 F 1.39899 * 109.47159 * 298.90452 * 10 9 4 13 13 F 1.39902 * 109.47222 * 58.90587 * 10 9 4 14 14 C 1.46901 * 111.00232 * 123.95208 * 2 1 3 15 15 C 1.53000 * 109.46954 * 73.65792 * 14 2 1 16 16 H 1.08999 * 109.46817 * 52.73276 * 15 14 2 17 17 C 1.47204 * 109.46978 * 292.73498 * 15 14 2 18 18 N 3.69841 * 53.16981 * 162.29901 * 2 1 3 19 19 C 1.52997 * 109.46846 * 172.73432 * 15 14 2 20 20 C 1.50703 * 109.46876 * 184.99765 * 19 15 14 21 21 H 1.07999 * 120.00053 * 0.02562 * 20 19 15 22 22 C 1.37877 * 120.00119 * 179.97438 * 20 19 15 23 23 N 1.31516 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46771 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46914 * 120.00139 * 24 22 20 27 27 H 1.48497 * 109.47315 * 240.00518 * 24 22 20 28 28 H 1.09003 * 109.47034 * 49.72616 * 1 2 3 29 29 H 1.09008 * 109.46867 * 169.72261 * 1 2 3 30 30 H 1.09000 * 109.47355 * 289.72137 * 1 2 3 31 31 H 1.08999 * 109.46766 * 171.48459 * 3 2 1 32 32 H 1.09003 * 109.47224 * 51.48761 * 3 2 1 33 33 H 1.07991 * 120.00174 * 0.04822 * 5 4 3 34 34 H 1.08002 * 119.99898 * 179.77228 * 6 5 4 35 35 H 1.08007 * 119.99631 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00233 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47148 * 193.66310 * 14 2 1 38 38 H 1.09005 * 109.46654 * 313.66424 * 14 2 1 39 39 H 1.08997 * 109.47476 * 305.00094 * 19 15 14 40 40 H 1.09006 * 109.47152 * 65.00819 * 19 15 14 41 41 H 0.96997 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6895 2.0270 -1.3221 5 6 0.6721 2.9588 -1.4127 6 6 0.3879 3.5557 -2.6265 7 6 1.1244 3.2249 -3.7487 8 6 2.1453 2.2977 -3.6570 9 6 2.4295 1.7005 -2.4428 10 6 3.5425 0.6895 -2.3427 11 9 4.1236 0.5092 -3.6025 12 9 4.5110 1.1495 -1.4440 13 9 3.0263 -0.5290 -1.8886 14 6 1.9955 -0.7659 1.1376 15 6 1.7994 -2.2613 0.8801 16 1 2.2207 -2.5210 -0.0911 17 6 0.3615 -2.5767 0.8914 18 7 -0.7480 -2.8201 0.9001 19 6 2.5062 -3.0641 1.9740 20 6 2.4180 -4.5343 1.6546 21 1 1.9090 -4.8630 0.7605 22 6 2.9879 -5.4596 2.5031 23 7 3.6081 -5.0592 3.5916 24 14 2.8792 -7.2818 2.1068 25 1 2.1356 -7.4682 0.8351 26 1 4.2480 -7.8402 1.9659 27 1 2.1680 -7.9855 3.2042 28 1 -0.3633 0.6643 -0.7841 29 1 -0.3633 -1.0113 -0.1834 30 1 -0.3634 0.3468 0.9674 31 1 3.0744 1.3465 0.1522 32 1 1.5281 1.9400 0.8041 33 1 0.0972 3.2174 -0.5359 34 1 -0.4092 4.2809 -2.6981 35 1 0.9021 3.6911 -4.6973 36 1 2.7203 2.0390 -4.5338 37 1 3.0579 -0.5541 1.2577 38 1 1.4633 -0.4807 2.0451 39 1 3.5533 -2.7655 2.0248 40 1 2.0264 -2.8715 2.9336 41 1 4.0087 -5.7102 4.1887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073895256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:06 Heat of formation + Delta-G solvation = -86.840488 kcal Electronic energy + Delta-G solvation = -28310.692679 eV Core-core repulsion = 23969.121438 eV Total energy + Delta-G solvation = -4341.571241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.96843 -47.58006 -47.24147 -39.95964 -38.07015 -35.67394 -33.78464 -32.52131 -32.03799 -31.13757 -27.44384 -27.21213 -25.93201 -24.47287 -22.54338 -22.12321 -21.58225 -20.92501 -18.33408 -18.25307 -18.17006 -16.87781 -16.44465 -16.18207 -15.67800 -15.54774 -15.06281 -14.84815 -14.49288 -14.24689 -14.20122 -14.09167 -13.87274 -13.47515 -13.36840 -13.25756 -13.14344 -13.04119 -12.69483 -12.65775 -12.45224 -12.19307 -11.96759 -11.80256 -11.55022 -11.32103 -11.15950 -10.97555 -10.82299 -10.71119 -10.40727 -10.21847 -9.54030 -9.44076 -9.22323 -9.14766 -8.43086 -8.24752 -6.07016 -4.09621 0.70701 0.94554 2.78333 3.19763 3.30751 3.38737 3.43946 3.61127 3.67502 3.82581 4.01183 4.11600 4.43856 4.44060 4.54062 4.65673 4.68439 4.82259 4.90100 5.10774 5.18930 5.24962 5.31179 5.34323 5.48931 5.56161 5.61967 5.70800 5.76781 5.92417 6.05059 6.07777 6.11562 6.14026 6.38663 6.47541 6.59090 7.03707 7.12081 7.46608 7.56169 7.88606 8.26315 8.43520 8.95112 9.55722 11.03976 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.003480 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.909200 B = 8043.870674 C = 8773.189547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.529 5.529 3 C 0.070 3.930 4 C -0.023 4.023 5 C -0.118 4.118 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.077 4.077 9 C -0.159 4.159 10 C 0.505 3.495 11 F -0.187 7.187 12 F -0.181 7.181 13 F -0.144 7.144 14 C 0.065 3.935 15 C 0.009 3.991 16 H 0.112 0.888 17 C 0.254 3.746 18 N -0.484 5.484 19 C 0.032 3.968 20 C -0.524 4.524 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.284 1.284 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.040 0.960 40 H 0.024 0.976 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.383 21.045 -12.819 24.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 N -0.253 5.253 3 C -0.057 4.057 4 C -0.024 4.024 5 C -0.137 4.137 6 C -0.109 4.109 7 C -0.144 4.144 8 C -0.095 4.095 9 C -0.161 4.161 10 C 0.450 3.550 11 F -0.168 7.168 12 F -0.162 7.162 13 F -0.125 7.125 14 C -0.064 4.064 15 C -0.013 4.013 16 H 0.130 0.870 17 C -0.062 4.062 18 N -0.161 5.161 19 C -0.006 4.006 20 C -0.562 4.562 21 H 0.076 0.924 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.210 1.210 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.768 20.332 -13.061 24.324 hybrid contribution 0.264 -0.752 0.596 0.995 sum -2.504 19.580 -12.465 23.346 Atomic orbital electron populations 1.22792 0.87373 1.03906 0.99885 1.62156 1.07977 1.10953 1.44177 1.21368 1.02062 0.89762 0.92553 1.19590 0.93779 0.94525 0.94460 1.21101 0.97189 0.96909 0.98474 1.21334 0.98601 0.98437 0.92558 1.21132 0.95908 0.98231 0.99102 1.21043 0.97038 0.94981 0.96399 1.19894 0.99328 1.00752 0.96150 1.18249 0.81384 0.81940 0.73384 1.93136 1.85990 1.95822 1.41861 1.93162 1.65774 1.88930 1.68351 1.93393 1.86040 1.44671 1.88376 1.22296 1.01126 0.92455 0.90479 1.19323 0.83001 0.93835 1.05123 0.87022 1.29152 0.94881 0.90877 0.91275 1.81032 1.13666 1.10734 1.10688 1.19172 0.95819 0.94029 0.91616 1.21181 1.35727 0.91016 1.08252 0.92444 1.24948 0.95036 0.99071 0.94926 1.69948 1.36449 1.34199 1.12491 0.86544 0.77810 0.85302 0.78492 1.19656 1.20830 1.21039 0.91843 0.89928 0.95589 0.88573 0.92958 0.85168 0.85295 0.85105 0.84555 0.88889 0.93907 0.94209 0.95783 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.72 60.07 0.52 0.65 16 2 N -0.53 -7.21 2.57 -244.36 -0.63 -7.84 16 3 C 0.07 0.78 4.34 -4.97 -0.02 0.76 16 4 C -0.02 -0.24 4.54 -104.62 -0.48 -0.71 16 5 C -0.12 -1.01 8.79 -39.58 -0.35 -1.36 16 6 C -0.09 -0.66 10.05 -39.58 -0.40 -1.06 16 7 C -0.13 -0.93 10.05 -39.58 -0.40 -1.33 16 8 C -0.08 -0.70 9.43 -39.58 -0.37 -1.07 16 9 C -0.16 -1.76 5.37 -104.62 -0.56 -2.32 16 10 C 0.50 6.33 2.87 36.01 0.10 6.44 16 11 F -0.19 -2.29 15.97 2.25 0.04 -2.25 16 12 F -0.18 -2.30 15.49 2.25 0.03 -2.26 16 13 F -0.14 -2.12 14.73 2.25 0.03 -2.09 16 14 C 0.06 0.98 4.65 -3.82 -0.02 0.96 16 15 C 0.01 0.17 2.40 -93.41 -0.22 -0.05 16 16 H 0.11 2.12 8.14 -51.93 -0.42 1.69 16 17 C 0.25 5.22 10.90 -20.76 -0.23 4.99 16 18 N -0.48 -10.57 17.63 42.15 0.74 -9.83 16 19 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 20 C -0.52 -14.12 8.60 -34.44 -0.30 -14.42 16 21 H 0.06 1.56 7.59 -52.49 -0.40 1.16 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 24 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.06 0.78 6.42 -51.93 -0.33 0.45 16 29 H 0.08 1.36 4.53 -51.92 -0.24 1.12 16 30 H 0.03 0.35 7.97 -51.93 -0.41 -0.07 16 31 H 0.10 1.08 5.83 -51.93 -0.30 0.78 16 32 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16 33 H 0.13 0.91 8.01 -52.49 -0.42 0.49 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.14 1.07 7.16 -52.49 -0.38 0.69 16 37 H 0.09 1.30 7.73 -51.93 -0.40 0.90 16 38 H 0.04 0.64 7.89 -51.93 -0.41 0.23 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -30.46 351.00 -6.66 -37.12 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.95 Total: -3.46 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.93 Total: -6.26 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.85 Total: -42.64 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.10 Total: -6.60 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.46 -6.66 -37.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073895256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.719 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds