Wall clock time and date at job start Tue Mar 31 2020 14:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99588 * 2 1 4 4 C 1.50701 * 109.47224 * 291.48548 * 3 2 1 5 5 C 1.38258 * 119.99715 * 104.09710 * 4 3 2 6 6 C 1.38216 * 119.99469 * 180.27414 * 5 4 3 7 7 C 1.38254 * 119.99927 * 359.74841 * 6 5 4 8 8 C 1.38212 * 120.00570 * 359.97438 * 7 6 5 9 9 C 1.38209 * 119.99912 * 283.84555 * 4 3 2 10 10 C 1.50701 * 120.00167 * 359.97438 * 9 4 3 11 11 F 1.39901 * 109.47272 * 178.90429 * 10 9 4 12 12 F 1.39899 * 109.47159 * 298.90452 * 10 9 4 13 13 F 1.39902 * 109.47222 * 58.90587 * 10 9 4 14 14 C 1.46901 * 111.00232 * 123.95208 * 2 1 3 15 15 C 1.53000 * 109.46954 * 73.65792 * 14 2 1 16 16 H 1.08999 * 109.46817 * 52.73276 * 15 14 2 17 17 C 1.47204 * 109.46978 * 292.73498 * 15 14 2 18 18 N 3.69841 * 53.16981 * 162.29901 * 2 1 3 19 19 C 1.52997 * 109.46846 * 172.73432 * 15 14 2 20 20 C 1.50703 * 109.46876 * 184.99765 * 19 15 14 21 21 H 1.07999 * 120.00053 * 0.02562 * 20 19 15 22 22 C 1.37877 * 120.00119 * 179.97438 * 20 19 15 23 23 N 1.31516 * 119.99983 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46771 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46914 * 120.00139 * 24 22 20 27 27 H 1.48497 * 109.47315 * 240.00518 * 24 22 20 28 28 H 1.09003 * 109.47034 * 49.72616 * 1 2 3 29 29 H 1.09008 * 109.46867 * 169.72261 * 1 2 3 30 30 H 1.09000 * 109.47355 * 289.72137 * 1 2 3 31 31 H 1.08999 * 109.46766 * 171.48459 * 3 2 1 32 32 H 1.09003 * 109.47224 * 51.48761 * 3 2 1 33 33 H 1.07991 * 120.00174 * 0.04822 * 5 4 3 34 34 H 1.08002 * 119.99898 * 179.77228 * 6 5 4 35 35 H 1.08007 * 119.99631 * 179.97438 * 7 6 5 36 36 H 1.07996 * 120.00233 * 179.97438 * 8 7 6 37 37 H 1.08994 * 109.47148 * 193.66310 * 14 2 1 38 38 H 1.09005 * 109.46654 * 313.66424 * 14 2 1 39 39 H 1.08997 * 109.47476 * 305.00094 * 19 15 14 40 40 H 1.09006 * 109.47152 * 65.00819 * 19 15 14 41 41 H 0.96997 * 120.00075 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6895 2.0270 -1.3221 5 6 0.6721 2.9588 -1.4127 6 6 0.3879 3.5557 -2.6265 7 6 1.1244 3.2249 -3.7487 8 6 2.1453 2.2977 -3.6570 9 6 2.4295 1.7005 -2.4428 10 6 3.5425 0.6895 -2.3427 11 9 4.1236 0.5092 -3.6025 12 9 4.5110 1.1495 -1.4440 13 9 3.0263 -0.5290 -1.8886 14 6 1.9955 -0.7659 1.1376 15 6 1.7994 -2.2613 0.8801 16 1 2.2207 -2.5210 -0.0911 17 6 0.3615 -2.5767 0.8914 18 7 -0.7480 -2.8201 0.9001 19 6 2.5062 -3.0641 1.9740 20 6 2.4180 -4.5343 1.6546 21 1 1.9090 -4.8630 0.7605 22 6 2.9879 -5.4596 2.5031 23 7 3.6081 -5.0592 3.5916 24 14 2.8792 -7.2818 2.1068 25 1 2.1356 -7.4682 0.8351 26 1 4.2480 -7.8402 1.9659 27 1 2.1680 -7.9855 3.2042 28 1 -0.3633 0.6643 -0.7841 29 1 -0.3633 -1.0113 -0.1834 30 1 -0.3634 0.3468 0.9674 31 1 3.0744 1.3465 0.1522 32 1 1.5281 1.9400 0.8041 33 1 0.0972 3.2174 -0.5359 34 1 -0.4092 4.2809 -2.6981 35 1 0.9021 3.6911 -4.6973 36 1 2.7203 2.0390 -4.5338 37 1 3.0579 -0.5541 1.2577 38 1 1.4633 -0.4807 2.0451 39 1 3.5533 -2.7655 2.0248 40 1 2.0264 -2.8715 2.9336 41 1 4.0087 -5.7102 4.1887 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073895256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:05 Heat of formation + Delta-G solvation = -101.761821 kcal Electronic energy + Delta-G solvation = -28311.339717 eV Core-core repulsion = 23969.121438 eV Total energy + Delta-G solvation = -4342.218279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.95111 -48.54909 -48.27842 -40.70246 -39.32165 -37.06567 -35.61697 -33.88573 -32.90882 -32.26434 -28.84818 -28.37834 -26.90444 -25.79478 -23.79904 -23.17909 -22.92413 -21.81145 -19.27431 -19.18610 -19.05398 -18.56776 -18.27756 -16.97144 -16.94053 -16.43898 -16.33730 -15.88027 -15.75860 -15.34332 -15.21437 -15.12599 -14.86535 -14.64601 -14.50802 -14.48509 -14.33202 -14.25630 -13.88943 -13.84321 -13.61981 -13.56459 -13.41511 -13.07642 -12.88568 -12.63152 -12.51545 -12.37472 -12.20240 -12.02648 -11.94980 -11.93322 -11.34726 -11.12177 -10.55690 -10.10171 -9.85434 -9.30254 -8.19865 -6.27824 0.03657 0.30825 1.38400 1.40946 1.51902 1.88918 1.95644 1.99224 2.40812 2.53250 2.93833 3.00845 3.15075 3.23464 3.25380 3.66727 3.69406 3.86687 4.06340 4.13871 4.23943 4.34593 4.38442 4.46486 4.49312 4.60705 4.65205 4.71858 4.80656 4.92014 4.94445 4.98812 5.01044 5.31728 5.40560 5.46320 5.46755 5.61774 5.78862 5.87882 5.98040 6.03227 6.21252 6.75524 6.86733 7.40510 8.91278 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.003480 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.909200 B = 8043.870674 C = 8773.189547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.535 5.535 3 C 0.072 3.928 4 C -0.040 4.040 5 C -0.121 4.121 6 C -0.086 4.086 7 C -0.120 4.120 8 C -0.087 4.087 9 C -0.177 4.177 10 C 0.500 3.500 11 F -0.188 7.188 12 F -0.185 7.185 13 F -0.161 7.161 14 C 0.074 3.926 15 C 0.021 3.979 16 H 0.113 0.887 17 C 0.262 3.738 18 N -0.506 5.506 19 C 0.040 3.960 20 C -0.538 4.538 21 H 0.051 0.949 22 C 0.012 3.988 23 N -0.922 5.922 24 Si 0.948 3.052 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.283 1.283 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.003 0.997 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 22.724 -14.018 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.258 5.258 3 C -0.055 4.055 4 C -0.040 4.040 5 C -0.139 4.139 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.105 4.105 9 C -0.178 4.178 10 C 0.446 3.554 11 F -0.170 7.170 12 F -0.167 7.167 13 F -0.142 7.142 14 C -0.054 4.054 15 C -0.001 4.001 16 H 0.130 0.870 17 C -0.053 4.053 18 N -0.184 5.184 19 C 0.001 3.999 20 C -0.576 4.576 21 H 0.069 0.931 22 C -0.187 4.187 23 N -0.562 5.562 24 Si 0.774 3.226 25 H -0.195 1.195 26 H -0.198 1.198 27 H -0.209 1.209 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.161 0.839 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.022 0.978 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.547 22.022 -14.273 26.482 hybrid contribution 0.503 -1.206 0.907 1.591 sum -3.043 20.816 -13.366 24.924 Atomic orbital electron populations 1.22664 0.87437 1.02512 1.00584 1.62034 1.07895 1.12712 1.43205 1.21367 1.01819 0.88351 0.93913 1.19586 0.94981 0.95724 0.93750 1.21348 0.96510 0.96233 0.99803 1.21727 0.98768 0.98146 0.91770 1.21510 0.94684 0.97118 1.00516 1.21255 0.97854 0.95438 0.95935 1.19896 0.99389 1.01202 0.97359 1.18551 0.81909 0.81846 0.73100 1.93121 1.86116 1.95858 1.41882 1.93145 1.66106 1.88872 1.68552 1.93348 1.86283 1.45977 1.88629 1.22120 1.02039 0.90016 0.91254 1.19178 0.81530 0.96022 1.03406 0.86953 1.29397 0.95103 0.90177 0.90647 1.81017 1.14410 1.11622 1.11348 1.18978 0.95769 0.93110 0.92031 1.21554 1.35162 0.93005 1.07876 0.93073 1.25697 0.94960 1.03066 0.94947 1.70034 1.37357 1.35513 1.13332 0.85647 0.78141 0.80691 0.78131 1.19528 1.19786 1.20893 0.90246 0.92671 0.95292 0.89027 0.91315 0.83570 0.82283 0.82277 0.83893 0.87799 0.93574 0.94723 0.97832 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.72 127.69 1.11 1.55 16 2 N -0.53 -14.12 2.57 -927.01 -2.38 -16.50 16 3 C 0.07 1.52 4.34 85.56 0.37 1.89 16 4 C -0.04 -0.77 4.54 -19.87 -0.09 -0.86 16 5 C -0.12 -1.71 8.79 22.27 0.20 -1.51 16 6 C -0.09 -0.93 10.05 22.27 0.22 -0.71 16 7 C -0.12 -1.39 10.05 22.27 0.22 -1.16 16 8 C -0.09 -1.42 9.43 22.27 0.21 -1.21 16 9 C -0.18 -3.70 5.37 -19.87 -0.11 -3.81 16 10 C 0.50 12.47 2.87 71.24 0.20 12.68 16 11 F -0.19 -4.60 15.97 44.97 0.72 -3.89 16 12 F -0.19 -4.71 15.49 44.97 0.70 -4.02 16 13 F -0.16 -4.78 14.73 44.97 0.66 -4.12 16 14 C 0.07 2.22 4.65 86.30 0.40 2.62 16 15 C 0.02 0.79 2.40 -12.60 -0.03 0.76 16 16 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 17 C 0.26 10.85 10.90 89.44 0.97 11.82 16 18 N -0.51 -22.22 17.63 20.01 0.35 -21.87 16 19 C 0.04 1.90 4.42 29.85 0.13 2.03 16 20 C -0.54 -29.33 8.60 25.60 0.22 -29.11 16 21 H 0.05 2.80 7.59 -2.91 -0.02 2.77 16 22 C 0.01 0.68 5.46 84.65 0.46 1.14 16 23 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 24 Si 0.95 44.37 29.54 68.60 2.03 46.39 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 27 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 28 H 0.08 1.82 6.42 -2.39 -0.02 1.81 16 29 H 0.05 1.79 4.53 -2.38 -0.01 1.78 16 30 H 0.03 0.74 7.97 -2.39 -0.02 0.72 16 31 H 0.09 2.00 5.83 -2.39 -0.01 1.98 16 32 H 0.07 1.21 7.91 -2.39 -0.02 1.19 16 33 H 0.15 1.55 8.01 -2.91 -0.02 1.53 16 34 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 35 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.14 2.04 7.16 -2.91 -0.02 2.01 16 37 H 0.10 2.87 7.73 -2.39 -0.02 2.85 16 38 H 0.05 1.35 7.89 -2.38 -0.02 1.33 16 39 H 0.03 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -65.50 351.00 7.93 -57.58 By element: Atomic # 1 Polarization: 2.62 SS G_CDS: 1.06 Total: 3.68 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 4.50 Total: -3.88 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.75 Total: -91.75 kcal Atomic # 9 Polarization: -14.10 SS G_CDS: 2.08 Total: -12.02 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.50 7.93 -57.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073895256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.186 kcal (2) G-P(sol) polarization free energy of solvation -65.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds