Wall clock time and date at job start Tue Mar 31 2020 14:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00129 * 2 1 4 4 C 1.50704 * 109.46446 * 293.95487 * 3 2 1 5 5 C 1.38257 * 119.99863 * 269.72072 * 4 3 2 6 6 C 1.38216 * 120.00133 * 180.37310 * 5 4 3 7 7 C 1.38257 * 119.99881 * 359.86201 * 6 5 4 8 8 C 1.38219 * 119.99711 * 0.09359 * 7 6 5 9 9 C 1.50704 * 119.99633 * 179.97438 * 8 7 6 10 10 F 1.39893 * 109.47441 * 270.02243 * 9 8 7 11 11 F 1.39895 * 109.46972 * 30.02706 * 9 8 7 12 12 F 1.39901 * 109.46822 * 150.02188 * 9 8 7 13 13 C 1.38214 * 120.00263 * 90.00530 * 4 3 2 14 14 C 1.46900 * 111.00057 * 123.94877 * 2 1 3 15 15 C 1.53003 * 109.47034 * 160.27054 * 14 2 1 16 16 H 1.09008 * 109.46984 * 55.41625 * 15 14 2 17 17 C 1.47199 * 109.47230 * 295.42141 * 15 14 2 18 18 N 3.65889 * 124.14598 * 202.98396 * 2 1 3 19 19 C 1.52998 * 109.47485 * 175.41743 * 15 14 2 20 20 C 1.50694 * 109.47504 * 185.00214 * 19 15 14 21 21 H 1.08000 * 120.00178 * 359.97438 * 20 19 15 22 22 C 1.37875 * 119.99966 * 179.97438 * 20 19 15 23 23 N 1.31509 * 120.00361 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47141 * 90.00445 * 24 22 20 26 26 H 1.48503 * 109.47213 * 209.99778 * 24 22 20 27 27 H 1.48491 * 109.47498 * 330.00222 * 24 22 20 28 28 H 1.08998 * 109.47318 * 65.56271 * 1 2 3 29 29 H 1.09001 * 109.47191 * 185.56479 * 1 2 3 30 30 H 1.09007 * 109.46810 * 305.56192 * 1 2 3 31 31 H 1.08996 * 109.47324 * 173.95880 * 3 2 1 32 32 H 1.08997 * 109.46918 * 53.95191 * 3 2 1 33 33 H 1.08001 * 120.00316 * 0.27993 * 5 4 3 34 34 H 1.08002 * 120.00158 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00368 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.99499 * 359.69115 * 13 4 3 37 37 H 1.08991 * 109.47727 * 280.27090 * 14 2 1 38 38 H 1.09004 * 109.46887 * 40.27790 * 14 2 1 39 39 H 1.09005 * 109.46943 * 305.00401 * 19 15 14 40 40 H 1.09001 * 109.46866 * 64.99881 * 19 15 14 41 41 H 0.97002 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 6 2.4966 1.9696 -2.3785 6 6 2.1714 2.5957 -3.5670 7 6 0.9849 3.2970 -3.6768 8 6 0.1250 3.3736 -2.5974 9 6 -1.1680 4.1385 -2.7170 10 9 -0.9577 5.4708 -2.3460 11 9 -1.6187 4.0884 -4.0404 12 9 -2.1279 3.5660 -1.8754 13 6 0.4513 2.7490 -1.4080 14 6 1.9954 -0.7659 1.1376 15 6 3.4459 -1.1640 0.8570 16 1 4.0307 -0.2717 0.6332 17 6 3.4892 -2.0804 -0.2941 18 7 3.5227 -2.7877 -1.1824 19 6 4.0304 -1.8617 2.0867 20 6 5.4927 -2.1439 1.8566 21 1 5.9586 -1.8548 0.9261 22 6 6.2359 -2.7710 2.8340 23 7 5.6688 -3.1226 3.9673 24 14 8.0484 -3.1214 2.5485 25 1 8.8561 -1.9690 3.0230 26 1 8.4406 -4.3424 3.2973 27 1 8.2896 -3.3312 1.0984 28 1 -0.3634 0.4251 -0.9356 29 1 -0.3633 -1.0228 0.0997 30 1 -0.3633 0.5977 0.8361 31 1 3.0797 1.3444 0.1081 32 1 1.5611 1.9274 0.8309 33 1 3.4231 1.4212 -2.2930 34 1 2.8432 2.5356 -4.4106 35 1 0.7305 3.7858 -4.6057 36 1 -0.2205 2.8091 -0.5645 37 1 1.9546 -0.1533 2.0382 38 1 1.3937 -1.6634 1.2811 39 1 3.9175 -1.2169 2.9583 40 1 3.5019 -2.7996 2.2578 41 1 6.1916 -3.5641 4.6548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076513945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:11 Heat of formation + Delta-G solvation = -106.244325 kcal Electronic energy + Delta-G solvation = -26917.712563 eV Core-core repulsion = 22575.299908 eV Total energy + Delta-G solvation = -4342.412654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.42048 -47.93752 -47.88364 -39.97372 -37.92861 -35.74781 -33.70019 -32.60586 -32.01920 -31.24290 -27.60115 -27.08323 -26.25356 -24.49415 -22.66899 -22.17939 -21.76794 -20.96194 -18.75269 -18.62656 -18.30876 -16.82906 -16.55535 -16.49512 -15.80118 -15.31543 -15.09403 -14.84916 -14.75566 -14.59382 -14.37690 -14.32558 -14.21366 -14.04407 -14.01235 -13.34968 -13.06960 -12.97776 -12.85504 -12.81168 -12.38935 -12.08814 -11.95575 -11.85743 -11.54716 -11.35870 -11.34022 -11.17824 -11.07270 -10.71544 -10.54978 -10.24146 -9.58680 -9.44250 -9.26977 -9.18306 -8.48839 -8.30484 -6.12704 -4.15995 0.69444 0.95433 2.39470 3.17424 3.26702 3.34130 3.38469 3.44946 3.70719 3.74801 3.81853 4.04524 4.18339 4.38792 4.47009 4.54052 4.72551 4.86535 4.97232 5.03454 5.16842 5.23795 5.25613 5.32577 5.45392 5.50568 5.61027 5.69148 5.76862 5.84689 5.89934 5.95064 6.03893 6.25985 6.29710 6.44532 6.50024 7.02608 7.04715 7.38595 7.49162 7.82366 8.19746 8.56739 8.88785 9.49760 10.98173 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002467 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.233074 B =11345.303540 C =11687.280595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.086 3.914 4 C -0.071 4.071 5 C -0.063 4.063 6 C -0.120 4.120 7 C -0.075 4.075 8 C -0.188 4.188 9 C 0.509 3.491 10 F -0.178 7.178 11 F -0.179 7.179 12 F -0.178 7.178 13 C -0.066 4.066 14 C 0.061 3.939 15 C 0.012 3.988 16 H 0.099 0.901 17 C 0.256 3.744 18 N -0.480 5.480 19 C 0.031 3.969 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.273 1.273 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 16.706 -10.483 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.264 5.264 3 C -0.041 4.041 4 C -0.071 4.071 5 C -0.082 4.082 6 C -0.138 4.138 7 C -0.093 4.093 8 C -0.189 4.189 9 C 0.455 3.545 10 F -0.160 7.160 11 F -0.160 7.160 12 F -0.159 7.159 13 C -0.084 4.084 14 C -0.068 4.068 15 C -0.010 4.010 16 H 0.116 0.884 17 C -0.061 4.061 18 N -0.157 5.157 19 C -0.008 4.008 20 C -0.564 4.564 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.718 3.282 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.154 0.846 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.044 0.956 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.915 15.331 -12.073 23.401 hybrid contribution 0.484 0.523 0.955 1.192 sum -12.432 15.854 -11.117 23.010 Atomic orbital electron populations 1.22457 0.87377 1.02067 1.00682 1.62021 1.07833 1.12211 1.44333 1.21199 1.01874 0.88410 0.92620 1.19797 0.93768 0.97012 0.96547 1.21394 0.99445 0.95429 0.91882 1.21179 0.96546 0.97710 0.98385 1.20908 0.93517 0.97614 0.97299 1.19876 0.95435 1.05584 0.97995 1.18337 0.84913 0.77673 0.73594 1.93222 1.94961 1.36423 1.91351 1.93183 1.90531 1.96306 1.35983 1.93193 1.66584 1.84527 1.71596 1.20843 0.96511 0.94977 0.96118 1.22301 0.95433 0.97980 0.91038 1.19227 0.95393 0.95427 0.90961 0.88367 1.28839 0.91231 0.92988 0.93002 1.80989 1.10387 1.11355 1.12931 1.19176 0.95849 0.96037 0.89709 1.21126 0.94256 1.39242 1.01805 0.92501 1.24948 0.98561 0.95345 0.95088 1.69931 1.36353 1.40600 1.06128 0.86602 0.85215 0.77904 0.78433 1.20471 1.21147 1.19833 0.91561 0.91248 0.95430 0.88608 0.93185 0.84638 0.84786 0.84984 0.85000 0.92363 0.90037 0.94463 0.95578 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.00 60.06 0.54 0.78 16 2 N -0.54 -6.64 4.37 -244.36 -1.07 -7.71 16 3 C 0.09 0.90 4.95 -4.97 -0.02 0.88 16 4 C -0.07 -0.72 4.88 -104.62 -0.51 -1.23 16 5 C -0.06 -0.63 9.70 -39.58 -0.38 -1.01 16 6 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 7 C -0.08 -0.66 9.40 -39.58 -0.37 -1.03 16 8 C -0.19 -1.81 5.45 -104.62 -0.57 -2.38 16 9 C 0.51 4.93 3.36 36.01 0.12 5.05 16 10 F -0.18 -1.80 17.30 2.25 0.04 -1.76 16 11 F -0.18 -1.76 16.46 2.25 0.04 -1.72 16 12 F -0.18 -1.80 16.46 2.25 0.04 -1.76 16 13 C -0.07 -0.64 7.46 -39.59 -0.30 -0.93 16 14 C 0.06 0.83 4.37 -3.82 -0.02 0.82 16 15 C 0.01 0.21 2.26 -93.41 -0.21 0.00 16 16 H 0.10 1.57 6.67 -51.92 -0.35 1.22 16 17 C 0.26 5.15 13.66 -20.76 -0.28 4.86 16 18 N -0.48 -10.58 18.54 42.15 0.78 -9.80 16 19 C 0.03 0.69 4.42 -27.89 -0.12 0.56 16 20 C -0.53 -13.61 8.60 -34.44 -0.30 -13.91 16 21 H 0.06 1.46 7.59 -52.49 -0.40 1.07 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 24 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 28 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 29 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 30 H 0.03 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.10 1.01 6.51 -51.93 -0.34 0.67 16 32 H 0.05 0.47 8.01 -51.93 -0.42 0.05 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.93 7.61 -52.49 -0.40 0.54 16 36 H 0.13 1.14 7.57 -52.49 -0.40 0.74 16 37 H 0.06 0.72 8.00 -51.93 -0.42 0.31 16 38 H 0.08 1.14 7.74 -51.93 -0.40 0.74 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -29.88 363.17 -7.01 -36.89 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.10 Total: -3.79 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.92 Total: -7.39 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.45 Total: -41.84 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.11 Total: -5.24 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.88 -7.01 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076513945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.350 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds