Wall clock time and date at job start Tue Mar 31 2020 14:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 111.00129 * 2 1 4 4 C 1.50704 * 109.46446 * 293.95487 * 3 2 1 5 5 C 1.38257 * 119.99863 * 269.72072 * 4 3 2 6 6 C 1.38216 * 120.00133 * 180.37310 * 5 4 3 7 7 C 1.38257 * 119.99881 * 359.86201 * 6 5 4 8 8 C 1.38219 * 119.99711 * 0.09359 * 7 6 5 9 9 C 1.50704 * 119.99633 * 179.97438 * 8 7 6 10 10 F 1.39893 * 109.47441 * 270.02243 * 9 8 7 11 11 F 1.39895 * 109.46972 * 30.02706 * 9 8 7 12 12 F 1.39901 * 109.46822 * 150.02188 * 9 8 7 13 13 C 1.38214 * 120.00263 * 90.00530 * 4 3 2 14 14 C 1.46900 * 111.00057 * 123.94877 * 2 1 3 15 15 C 1.53003 * 109.47034 * 160.27054 * 14 2 1 16 16 H 1.09008 * 109.46984 * 55.41625 * 15 14 2 17 17 C 1.47199 * 109.47230 * 295.42141 * 15 14 2 18 18 N 3.65889 * 124.14598 * 202.98396 * 2 1 3 19 19 C 1.52998 * 109.47485 * 175.41743 * 15 14 2 20 20 C 1.50694 * 109.47504 * 185.00214 * 19 15 14 21 21 H 1.08000 * 120.00178 * 359.97438 * 20 19 15 22 22 C 1.37875 * 119.99966 * 179.97438 * 20 19 15 23 23 N 1.31509 * 120.00361 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99783 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.47141 * 90.00445 * 24 22 20 26 26 H 1.48503 * 109.47213 * 209.99778 * 24 22 20 27 27 H 1.48491 * 109.47498 * 330.00222 * 24 22 20 28 28 H 1.08998 * 109.47318 * 65.56271 * 1 2 3 29 29 H 1.09001 * 109.47191 * 185.56479 * 1 2 3 30 30 H 1.09007 * 109.46810 * 305.56192 * 1 2 3 31 31 H 1.08996 * 109.47324 * 173.95880 * 3 2 1 32 32 H 1.08997 * 109.46918 * 53.95191 * 3 2 1 33 33 H 1.08001 * 120.00316 * 0.27993 * 5 4 3 34 34 H 1.08002 * 120.00158 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.00368 * 180.02562 * 7 6 5 36 36 H 1.08001 * 119.99499 * 359.69115 * 13 4 3 37 37 H 1.08991 * 109.47727 * 280.27090 * 14 2 1 38 38 H 1.09004 * 109.46887 * 40.27790 * 14 2 1 39 39 H 1.09005 * 109.46943 * 305.00401 * 19 15 14 40 40 H 1.09001 * 109.46866 * 64.99881 * 19 15 14 41 41 H 0.97002 * 120.00374 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0470 -1.2985 5 6 2.4966 1.9696 -2.3785 6 6 2.1714 2.5957 -3.5670 7 6 0.9849 3.2970 -3.6768 8 6 0.1250 3.3736 -2.5974 9 6 -1.1680 4.1385 -2.7170 10 9 -0.9577 5.4708 -2.3460 11 9 -1.6187 4.0884 -4.0404 12 9 -2.1279 3.5660 -1.8754 13 6 0.4513 2.7490 -1.4080 14 6 1.9954 -0.7659 1.1376 15 6 3.4459 -1.1640 0.8570 16 1 4.0307 -0.2717 0.6332 17 6 3.4892 -2.0804 -0.2941 18 7 3.5227 -2.7877 -1.1824 19 6 4.0304 -1.8617 2.0867 20 6 5.4927 -2.1439 1.8566 21 1 5.9586 -1.8548 0.9261 22 6 6.2359 -2.7710 2.8340 23 7 5.6688 -3.1226 3.9673 24 14 8.0484 -3.1214 2.5485 25 1 8.8561 -1.9690 3.0230 26 1 8.4406 -4.3424 3.2973 27 1 8.2896 -3.3312 1.0984 28 1 -0.3634 0.4251 -0.9356 29 1 -0.3633 -1.0228 0.0997 30 1 -0.3633 0.5977 0.8361 31 1 3.0797 1.3444 0.1081 32 1 1.5611 1.9274 0.8309 33 1 3.4231 1.4212 -2.2930 34 1 2.8432 2.5356 -4.4106 35 1 0.7305 3.7858 -4.6057 36 1 -0.2205 2.8091 -0.5645 37 1 1.9546 -0.1533 2.0382 38 1 1.3937 -1.6634 1.2811 39 1 3.9175 -1.2169 2.9583 40 1 3.5019 -2.7996 2.2578 41 1 6.1916 -3.5641 4.6548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076513945.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:11 Heat of formation + Delta-G solvation = -121.145487 kcal Electronic energy + Delta-G solvation = -26918.358726 eV Core-core repulsion = 22575.299908 eV Total energy + Delta-G solvation = -4343.058817 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.18384 -48.70224 -48.65235 -40.72287 -39.05425 -37.15455 -35.47282 -33.81129 -33.04507 -32.27512 -28.96685 -28.09044 -26.98843 -25.88675 -23.61594 -23.36596 -23.05942 -21.80717 -19.51531 -19.38198 -19.08044 -18.51418 -18.12310 -17.24036 -16.76988 -16.48130 -16.25042 -15.98224 -15.64322 -15.53559 -15.34383 -15.12997 -15.05476 -14.86289 -14.81373 -14.60347 -14.37103 -14.21490 -13.83039 -13.76215 -13.60229 -13.55151 -13.17387 -13.00936 -12.87549 -12.68293 -12.65944 -12.46685 -12.34529 -12.11417 -12.02043 -11.75590 -11.34399 -11.09436 -10.52719 -10.16178 -9.91479 -9.20985 -8.17566 -6.25268 -0.02657 0.25678 1.41314 1.43931 1.52504 1.64800 2.11632 2.19311 2.42019 2.45343 2.71172 2.99970 3.12891 3.18527 3.40272 3.42827 3.73382 3.86814 4.04087 4.16183 4.24704 4.29018 4.38444 4.48015 4.52907 4.67444 4.73635 4.78433 4.85476 4.88862 4.99926 5.01726 5.08366 5.15673 5.33982 5.50039 5.54010 5.64989 5.80218 5.81785 6.05551 6.14566 6.24526 6.86586 6.98391 7.43388 8.93276 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.023618 B = 0.002467 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.233074 B =11345.303540 C =11687.280595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.086 3.914 4 C -0.079 4.079 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.077 4.077 8 C -0.196 4.196 9 C 0.512 3.488 10 F -0.181 7.181 11 F -0.180 7.180 12 F -0.181 7.181 13 C -0.068 4.068 14 C 0.071 3.929 15 C 0.023 3.977 16 H 0.118 0.882 17 C 0.268 3.732 18 N -0.517 5.517 19 C 0.037 3.963 20 C -0.536 4.536 21 H 0.054 0.946 22 C 0.012 3.988 23 N -0.924 5.924 24 Si 0.946 3.054 25 H -0.266 1.266 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.134 0.866 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.140 0.860 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.000 1.000 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 18.014 -11.041 24.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.041 4.041 4 C -0.079 4.079 5 C -0.094 4.094 6 C -0.138 4.138 7 C -0.095 4.095 8 C -0.197 4.197 9 C 0.458 3.542 10 F -0.163 7.163 11 F -0.161 7.161 12 F -0.162 7.162 13 C -0.087 4.087 14 C -0.057 4.057 15 C 0.001 3.999 16 H 0.136 0.864 17 C -0.048 4.048 18 N -0.194 5.194 19 C -0.001 4.001 20 C -0.575 4.575 21 H 0.073 0.927 22 C -0.187 4.187 23 N -0.564 5.564 24 Si 0.772 3.228 25 H -0.191 1.191 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.018 0.982 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.984 16.656 -12.640 24.612 hybrid contribution 0.475 0.143 1.087 1.195 sum -12.509 16.799 -11.552 23.919 Atomic orbital electron populations 1.22442 0.86261 1.02176 1.01414 1.61922 1.08896 1.13315 1.43607 1.21238 1.01822 0.87590 0.93439 1.19788 0.94141 0.97482 0.96511 1.21535 0.99577 0.95863 0.92463 1.21420 0.96784 0.97012 0.98606 1.21159 0.93279 0.97315 0.97737 1.19969 0.95529 1.05828 0.98405 1.18333 0.84914 0.77522 0.73449 1.93215 1.94971 1.36687 1.91379 1.93179 1.90565 1.96303 1.36059 1.93185 1.66754 1.84560 1.71701 1.20931 0.96483 0.94823 0.96468 1.22105 0.92739 0.98536 0.92351 1.19193 0.98132 0.94821 0.87773 0.86421 1.29350 0.90037 0.92513 0.92936 1.80988 1.11826 1.12366 1.14257 1.18995 0.94036 0.95279 0.91837 1.21554 0.96125 1.38401 1.01374 0.92733 1.25688 1.02316 0.95608 0.95107 1.70025 1.37707 1.41739 1.06916 0.85729 0.81123 0.77980 0.77952 1.19144 1.21232 1.20072 0.91483 0.91679 0.93771 0.88760 0.91701 0.84790 0.82795 0.83364 0.84174 0.90497 0.90496 0.94532 0.98163 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.00 127.69 1.15 1.63 16 2 N -0.55 -12.59 4.37 -927.03 -4.05 -16.65 16 3 C 0.09 1.63 4.95 85.56 0.42 2.05 16 4 C -0.08 -1.47 4.88 -19.86 -0.10 -1.56 16 5 C -0.08 -1.40 9.70 22.27 0.22 -1.18 16 6 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 7 C -0.08 -1.20 9.40 22.27 0.21 -0.99 16 8 C -0.20 -3.46 5.45 -19.87 -0.11 -3.56 16 9 C 0.51 9.18 3.36 71.24 0.24 9.42 16 10 F -0.18 -3.41 17.30 44.97 0.78 -2.63 16 11 F -0.18 -3.27 16.46 44.97 0.74 -2.53 16 12 F -0.18 -3.40 16.46 44.97 0.74 -2.66 16 13 C -0.07 -1.20 7.46 22.27 0.17 -1.04 16 14 C 0.07 1.84 4.37 86.30 0.38 2.22 16 15 C 0.02 0.76 2.26 -12.60 -0.03 0.73 16 16 H 0.12 3.54 6.67 -2.38 -0.02 3.52 16 17 C 0.27 10.60 13.66 89.44 1.22 11.82 16 18 N -0.52 -22.67 18.54 20.01 0.37 -22.30 16 19 C 0.04 1.65 4.42 29.85 0.13 1.78 16 20 C -0.54 -27.58 8.60 25.60 0.22 -27.36 16 21 H 0.05 2.77 7.59 -2.91 -0.02 2.75 16 22 C 0.01 0.63 5.46 84.65 0.46 1.09 16 23 N -0.92 -52.13 13.29 21.45 0.28 -51.84 16 24 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 26 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 28 H 0.07 1.30 6.53 -2.39 -0.02 1.29 16 29 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 30 H 0.04 0.71 8.07 -2.38 -0.02 0.69 16 31 H 0.09 1.79 6.51 -2.39 -0.02 1.77 16 32 H 0.06 1.04 8.01 -2.39 -0.02 1.02 16 33 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.15 1.77 7.61 -2.91 -0.02 1.75 16 36 H 0.14 2.15 7.57 -2.91 -0.02 2.13 16 37 H 0.08 1.72 8.00 -2.39 -0.02 1.70 16 38 H 0.08 2.06 7.74 -2.38 -0.02 2.05 16 39 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -62.85 363.17 6.75 -56.10 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.06 Total: 4.48 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 4.81 Total: -6.60 kcal Atomic # 7 Polarization: -87.40 SS G_CDS: -3.40 Total: -90.79 kcal Atomic # 9 Polarization: -10.09 SS G_CDS: 2.26 Total: -7.83 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.85 6.75 -56.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076513945.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.047 kcal (2) G-P(sol) polarization free energy of solvation -62.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds