Wall clock time and date at job start Tue Mar 31 2020 14:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99883 * 2 1 4 4 C 1.50706 * 109.47176 * 293.94754 * 3 2 1 5 5 C 1.38260 * 119.99900 * 269.73331 * 4 3 2 6 6 C 1.38211 * 119.99543 * 179.81072 * 5 4 3 7 7 C 1.38262 * 120.00330 * 0.41348 * 6 5 4 8 8 C 1.38218 * 119.99785 * 359.81661 * 7 6 5 9 9 C 1.50695 * 119.99956 * 179.97438 * 8 7 6 10 10 F 1.39894 * 109.47180 * 270.01889 * 9 8 7 11 11 F 1.39902 * 109.47088 * 30.02232 * 9 8 7 12 12 F 1.39904 * 109.47089 * 150.02238 * 9 8 7 13 13 C 1.38213 * 119.99877 * 90.00148 * 4 3 2 14 14 C 1.46899 * 110.99679 * 123.95259 * 2 1 3 15 15 C 1.52996 * 109.47585 * 66.04425 * 14 2 1 16 16 H 1.09005 * 109.47354 * 305.00073 * 15 14 2 17 17 C 1.47205 * 109.47081 * 65.00124 * 15 14 2 18 18 N 3.66494 * 112.02583 * 199.40522 * 2 1 3 19 19 C 1.52998 * 109.47646 * 184.99794 * 15 14 2 20 20 C 1.50697 * 109.47332 * 174.99997 * 19 15 14 21 21 H 1.08000 * 120.00129 * 0.02562 * 20 19 15 22 22 C 1.37881 * 120.00014 * 180.02562 * 20 19 15 23 23 N 1.31513 * 119.99817 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47445 * 59.99643 * 24 22 20 26 26 H 1.48499 * 109.47290 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47080 * 299.99493 * 24 22 20 28 28 H 1.09007 * 109.47214 * 60.00587 * 1 2 3 29 29 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47697 * 300.00606 * 1 2 3 31 31 H 1.09001 * 109.46739 * 173.95162 * 3 2 1 32 32 H 1.09000 * 109.47767 * 53.95421 * 3 2 1 33 33 H 1.07997 * 120.00247 * 359.97438 * 5 4 3 34 34 H 1.08006 * 120.00219 * 180.20825 * 6 5 4 35 35 H 1.07992 * 120.00212 * 179.79390 * 7 6 5 36 36 H 1.08001 * 119.99504 * 359.97438 * 13 4 3 37 37 H 1.08998 * 109.47358 * 186.05143 * 14 2 1 38 38 H 1.09003 * 109.47119 * 306.04487 * 14 2 1 39 39 H 1.08999 * 109.47407 * 295.00705 * 19 15 14 40 40 H 1.09006 * 109.46946 * 55.00040 * 19 15 14 41 41 H 0.97003 * 119.99825 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 6 2.4968 1.9695 -2.3785 6 6 2.1662 2.5859 -3.5706 7 6 0.9798 3.2872 -3.6805 8 6 0.1225 3.3687 -2.5994 9 6 -1.1704 4.1336 -2.7190 10 9 -0.9586 5.4674 -2.3540 11 9 -1.6244 4.0783 -4.0411 12 9 -2.1285 3.5652 -1.8728 13 6 0.4514 2.7489 -1.4081 14 6 1.9954 -0.7660 1.1376 15 6 1.6314 -2.2426 0.9705 16 1 0.5530 -2.3389 0.8434 17 6 2.3155 -2.7855 -0.2144 18 7 2.8434 -3.2045 -1.1288 19 6 2.0698 -3.0198 2.2133 20 6 1.6029 -4.4484 2.1030 21 1 1.0492 -4.7700 1.2333 22 6 1.8826 -5.3450 3.1125 23 7 2.5573 -4.9536 4.1713 24 14 1.3045 -7.1159 2.9754 25 1 1.9007 -7.7392 1.7665 26 1 1.7299 -7.8703 4.1817 27 1 -0.1764 -7.1463 2.8688 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.0797 1.3443 0.1083 32 1 1.5611 1.9274 0.8309 33 1 3.4254 1.4251 -2.2914 34 1 2.8362 2.5225 -4.4153 35 1 0.7231 3.7716 -4.6109 36 1 -0.2183 2.8127 -0.5632 37 1 3.0796 -0.6611 1.1758 38 1 1.5610 -0.3872 2.0628 39 1 3.1568 -2.9978 2.2909 40 1 1.6328 -2.5623 3.1009 41 1 2.7544 -5.5844 4.8813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076513946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:14 Heat of formation + Delta-G solvation = -105.094865 kcal Electronic energy + Delta-G solvation = -26791.628740 eV Core-core repulsion = 22449.265930 eV Total energy + Delta-G solvation = -4342.362810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.42607 -47.93965 -47.89257 -40.00566 -37.97469 -35.75379 -33.73954 -32.67456 -32.05483 -31.04814 -27.57720 -27.18036 -26.27550 -24.65600 -22.67678 -22.15052 -21.63670 -20.99841 -18.76076 -18.63422 -18.28426 -16.78634 -16.57687 -16.56760 -15.82869 -15.49716 -15.11053 -14.80585 -14.74349 -14.53665 -14.44017 -14.35691 -14.23406 -14.04817 -14.02112 -13.39195 -13.06262 -12.99285 -12.86942 -12.76911 -12.44590 -12.04766 -11.87992 -11.83849 -11.50797 -11.41964 -11.38507 -11.19506 -11.05827 -10.69101 -10.56712 -10.17971 -9.60189 -9.48543 -9.30016 -9.18697 -8.47697 -8.30094 -6.11884 -4.15140 0.65201 0.91190 2.38164 3.12907 3.29772 3.34124 3.37909 3.43485 3.70978 3.73678 3.81444 4.04387 4.17199 4.39722 4.42729 4.50483 4.67645 4.87205 4.91076 4.99523 5.13440 5.26039 5.26470 5.32356 5.45111 5.48474 5.58666 5.68461 5.72172 5.81344 5.93869 5.98868 6.03326 6.20509 6.32226 6.44628 6.46717 7.01643 7.06097 7.39161 7.49503 7.83133 8.20596 8.56509 8.89328 9.50481 10.98958 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002379 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.475239 B =11767.535901 C =12112.370013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.540 5.540 3 C 0.091 3.909 4 C -0.072 4.072 5 C -0.064 4.064 6 C -0.121 4.121 7 C -0.075 4.075 8 C -0.187 4.187 9 C 0.509 3.491 10 F -0.178 7.178 11 F -0.178 7.178 12 F -0.177 7.177 13 C -0.065 4.065 14 C 0.062 3.938 15 C 0.010 3.990 16 H 0.101 0.899 17 C 0.256 3.744 18 N -0.479 5.479 19 C 0.032 3.968 20 C -0.527 4.527 21 H 0.056 0.944 22 C 0.063 3.937 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.275 1.275 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 21.819 -11.076 24.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.264 5.264 3 C -0.036 4.036 4 C -0.072 4.072 5 C -0.083 4.083 6 C -0.139 4.139 7 C -0.093 4.093 8 C -0.188 4.188 9 C 0.455 3.545 10 F -0.160 7.160 11 F -0.160 7.160 12 F -0.158 7.158 13 C -0.084 4.084 14 C -0.066 4.066 15 C -0.012 4.012 16 H 0.119 0.881 17 C -0.061 4.061 18 N -0.156 5.156 19 C -0.006 4.006 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.200 1.200 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.552 20.908 -12.701 24.720 hybrid contribution -1.069 -0.402 1.029 1.537 sum -4.621 20.506 -11.672 24.043 Atomic orbital electron populations 1.22563 0.87249 1.03071 1.00476 1.62044 1.08320 1.11752 1.44283 1.21077 1.01109 0.88782 0.92676 1.19791 0.93847 0.97016 0.96576 1.21350 0.99433 0.95555 0.91914 1.21170 0.96584 0.97810 0.98307 1.20915 0.93519 0.97534 0.97322 1.19890 0.95452 1.05522 0.97920 1.18329 0.84916 0.77648 0.73645 1.93220 1.94942 1.36309 1.91511 1.93187 1.90432 1.96276 1.36073 1.93202 1.66644 1.84662 1.71275 1.20862 0.96454 0.94845 0.96195 1.22275 1.00814 0.92373 0.91150 1.19263 0.99295 0.92380 0.90282 0.88143 1.28834 0.92737 0.91474 0.93030 1.80978 1.10683 1.10858 1.13103 1.19165 0.97710 0.94374 0.89396 1.21097 1.36154 0.94515 1.04773 0.92564 1.24946 0.94903 0.98831 0.95229 1.69925 1.39351 1.35406 1.08354 0.86655 0.79265 0.84647 0.77526 1.20210 1.21180 1.20039 0.91593 0.90394 0.95165 0.89326 0.93333 0.84798 0.84805 0.84943 0.84880 0.90092 0.92579 0.95560 0.94468 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.95 60.07 0.54 0.70 16 2 N -0.54 -6.67 4.45 -244.37 -1.09 -7.76 16 3 C 0.09 0.90 5.12 -4.98 -0.03 0.87 16 4 C -0.07 -0.70 4.88 -104.62 -0.51 -1.21 16 5 C -0.06 -0.59 9.70 -39.58 -0.38 -0.97 16 6 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 7 C -0.07 -0.63 9.40 -39.58 -0.37 -1.00 16 8 C -0.19 -1.76 5.45 -104.63 -0.57 -2.33 16 9 C 0.51 4.90 3.36 36.00 0.12 5.02 16 10 F -0.18 -1.77 17.30 2.25 0.04 -1.73 16 11 F -0.18 -1.75 16.46 2.25 0.04 -1.71 16 12 F -0.18 -1.81 16.46 2.25 0.04 -1.77 16 13 C -0.06 -0.61 7.32 -39.58 -0.29 -0.90 16 14 C 0.06 0.86 4.32 -3.83 -0.02 0.84 16 15 C 0.01 0.17 2.14 -93.41 -0.20 -0.03 16 16 H 0.10 1.69 6.26 -51.93 -0.33 1.37 16 17 C 0.26 5.22 13.67 -20.76 -0.28 4.93 16 18 N -0.48 -10.65 18.54 42.15 0.78 -9.87 16 19 C 0.03 0.72 4.42 -27.89 -0.12 0.60 16 20 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 21 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 24 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.07 0.73 6.17 -51.92 -0.32 0.41 16 29 H 0.08 0.95 6.21 -51.93 -0.32 0.63 16 30 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.81 7.87 -51.93 -0.41 0.41 16 32 H 0.05 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.90 7.60 -52.49 -0.40 0.50 16 36 H 0.13 1.14 7.58 -52.49 -0.40 0.74 16 37 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 38 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 362.45 15.07 5.46 5.46 Total: -1.00 -30.12 362.45 -7.00 -37.12 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -5.07 Total: -3.99 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -2.91 Total: -7.37 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.43 Total: -42.10 kcal Atomic # 9 Polarization: -5.33 SS G_CDS: 0.11 Total: -5.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.12 -7.00 -37.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076513946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.974 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds