Wall clock time and date at job start Tue Mar 31 2020 14:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99883 * 2 1 4 4 C 1.50706 * 109.47176 * 293.94754 * 3 2 1 5 5 C 1.38260 * 119.99900 * 269.73331 * 4 3 2 6 6 C 1.38211 * 119.99543 * 179.81072 * 5 4 3 7 7 C 1.38262 * 120.00330 * 0.41348 * 6 5 4 8 8 C 1.38218 * 119.99785 * 359.81661 * 7 6 5 9 9 C 1.50695 * 119.99956 * 179.97438 * 8 7 6 10 10 F 1.39894 * 109.47180 * 270.01889 * 9 8 7 11 11 F 1.39902 * 109.47088 * 30.02232 * 9 8 7 12 12 F 1.39904 * 109.47089 * 150.02238 * 9 8 7 13 13 C 1.38213 * 119.99877 * 90.00148 * 4 3 2 14 14 C 1.46899 * 110.99679 * 123.95259 * 2 1 3 15 15 C 1.52996 * 109.47585 * 66.04425 * 14 2 1 16 16 H 1.09005 * 109.47354 * 305.00073 * 15 14 2 17 17 C 1.47205 * 109.47081 * 65.00124 * 15 14 2 18 18 N 3.66494 * 112.02583 * 199.40522 * 2 1 3 19 19 C 1.52998 * 109.47646 * 184.99794 * 15 14 2 20 20 C 1.50697 * 109.47332 * 174.99997 * 19 15 14 21 21 H 1.08000 * 120.00129 * 0.02562 * 20 19 15 22 22 C 1.37881 * 120.00014 * 180.02562 * 20 19 15 23 23 N 1.31513 * 119.99817 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99906 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47445 * 59.99643 * 24 22 20 26 26 H 1.48499 * 109.47290 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47080 * 299.99493 * 24 22 20 28 28 H 1.09007 * 109.47214 * 60.00587 * 1 2 3 29 29 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47697 * 300.00606 * 1 2 3 31 31 H 1.09001 * 109.46739 * 173.95162 * 3 2 1 32 32 H 1.09000 * 109.47767 * 53.95421 * 3 2 1 33 33 H 1.07997 * 120.00247 * 359.97438 * 5 4 3 34 34 H 1.08006 * 120.00219 * 180.20825 * 6 5 4 35 35 H 1.07992 * 120.00212 * 179.79390 * 7 6 5 36 36 H 1.08001 * 119.99504 * 359.97438 * 13 4 3 37 37 H 1.08998 * 109.47358 * 186.05143 * 14 2 1 38 38 H 1.09003 * 109.47119 * 306.04487 * 14 2 1 39 39 H 1.08999 * 109.47407 * 295.00705 * 19 15 14 40 40 H 1.09006 * 109.46946 * 55.00040 * 19 15 14 41 41 H 0.97003 * 119.99825 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 6 2.4968 1.9695 -2.3785 6 6 2.1662 2.5859 -3.5706 7 6 0.9798 3.2872 -3.6805 8 6 0.1225 3.3687 -2.5994 9 6 -1.1704 4.1336 -2.7190 10 9 -0.9586 5.4674 -2.3540 11 9 -1.6244 4.0783 -4.0411 12 9 -2.1285 3.5652 -1.8728 13 6 0.4514 2.7489 -1.4081 14 6 1.9954 -0.7660 1.1376 15 6 1.6314 -2.2426 0.9705 16 1 0.5530 -2.3389 0.8434 17 6 2.3155 -2.7855 -0.2144 18 7 2.8434 -3.2045 -1.1288 19 6 2.0698 -3.0198 2.2133 20 6 1.6029 -4.4484 2.1030 21 1 1.0492 -4.7700 1.2333 22 6 1.8826 -5.3450 3.1125 23 7 2.5573 -4.9536 4.1713 24 14 1.3045 -7.1159 2.9754 25 1 1.9007 -7.7392 1.7665 26 1 1.7299 -7.8703 4.1817 27 1 -0.1764 -7.1463 2.8688 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.0797 1.3443 0.1083 32 1 1.5611 1.9274 0.8309 33 1 3.4254 1.4251 -2.2914 34 1 2.8362 2.5225 -4.4153 35 1 0.7231 3.7716 -4.6109 36 1 -0.2183 2.8127 -0.5632 37 1 3.0796 -0.6611 1.1758 38 1 1.5610 -0.3872 2.0628 39 1 3.1568 -2.9978 2.2909 40 1 1.6328 -2.5623 3.1009 41 1 2.7544 -5.5844 4.8813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076513946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:14 Heat of formation + Delta-G solvation = -120.303163 kcal Electronic energy + Delta-G solvation = -26792.288221 eV Core-core repulsion = 22449.265930 eV Total energy + Delta-G solvation = -4343.022291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.18699 -48.70572 -48.65681 -40.72211 -39.11571 -37.15747 -35.49612 -33.94260 -32.96533 -32.16242 -28.79954 -28.34326 -26.99329 -25.98913 -23.77561 -23.27999 -22.88073 -21.81542 -19.51991 -19.38578 -19.01900 -18.49940 -18.19688 -17.24566 -16.86221 -16.55334 -16.26127 -15.95281 -15.64703 -15.54024 -15.33666 -15.14128 -15.07663 -14.87686 -14.81766 -14.70344 -14.30237 -14.22547 -13.81430 -13.72124 -13.69870 -13.55458 -13.22522 -13.01054 -12.74840 -12.73089 -12.58825 -12.44374 -12.41173 -12.09837 -12.07276 -11.74168 -11.35053 -11.11969 -10.53777 -10.16726 -9.92467 -9.20970 -8.18735 -6.26579 -0.03544 0.24493 1.41422 1.43157 1.49962 1.64488 2.09340 2.17043 2.40720 2.44505 2.70884 2.99443 3.13072 3.17291 3.37791 3.42763 3.73486 3.85947 4.02074 4.12638 4.26289 4.32080 4.33925 4.46815 4.52156 4.66470 4.75971 4.77842 4.83002 4.86928 4.95964 5.01754 5.14958 5.17755 5.32709 5.48172 5.52187 5.63809 5.79239 5.80529 6.05303 6.13917 6.23401 6.84579 6.95949 7.41877 8.91861 Molecular weight = 326.13amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002379 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.475239 B =11767.535901 C =12112.370013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.553 5.553 3 C 0.093 3.907 4 C -0.081 4.081 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.077 4.077 8 C -0.196 4.196 9 C 0.511 3.489 10 F -0.181 7.181 11 F -0.180 7.180 12 F -0.181 7.181 13 C -0.069 4.069 14 C 0.073 3.927 15 C 0.020 3.980 16 H 0.114 0.886 17 C 0.267 3.733 18 N -0.514 5.514 19 C 0.039 3.961 20 C -0.540 4.540 21 H 0.052 0.948 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.946 3.054 25 H -0.282 1.282 26 H -0.282 1.282 27 H -0.264 1.264 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.138 0.862 34 H 0.156 0.844 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.003 0.997 40 H 0.036 0.964 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.090 22.619 -11.610 25.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.277 5.277 3 C -0.034 4.034 4 C -0.081 4.081 5 C -0.093 4.093 6 C -0.138 4.138 7 C -0.095 4.095 8 C -0.198 4.198 9 C 0.457 3.543 10 F -0.162 7.162 11 F -0.161 7.161 12 F -0.162 7.162 13 C -0.088 4.088 14 C -0.056 4.056 15 C -0.002 4.002 16 H 0.132 0.868 17 C -0.049 4.049 18 N -0.192 5.192 19 C 0.000 4.000 20 C -0.578 4.578 21 H 0.070 0.930 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.772 3.228 25 H -0.207 1.207 26 H -0.207 1.207 27 H -0.188 1.188 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.021 0.979 40 H 0.054 0.946 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.112 21.721 -13.242 25.770 hybrid contribution -0.900 -0.609 1.149 1.582 sum -5.013 21.112 -12.093 24.841 Atomic orbital electron populations 1.22560 0.86754 1.02612 1.01384 1.61956 1.08903 1.13294 1.43526 1.21107 1.01485 0.87431 0.93382 1.19803 0.94175 0.97480 0.96672 1.21537 0.99649 0.95781 0.92289 1.21437 0.96728 0.97014 0.98650 1.21171 0.93371 0.97298 0.97685 1.19972 0.95514 1.05880 0.98405 1.18356 0.84963 0.77538 0.73449 1.93214 1.94947 1.36550 1.91531 1.93181 1.90482 1.96280 1.36180 1.93190 1.66895 1.84726 1.71433 1.20946 0.96531 0.94856 0.96474 1.22086 1.01151 0.89801 0.92542 1.19220 0.99624 0.94352 0.87031 0.86809 1.29322 0.91999 0.90574 0.93040 1.80975 1.11866 1.11990 1.14338 1.18980 0.96050 0.93414 0.91540 1.21528 1.35536 0.96453 1.04289 0.92956 1.25679 0.95284 1.02446 0.95204 1.70015 1.40611 1.36560 1.09035 0.85793 0.79361 0.80495 0.77199 1.20745 1.20722 1.18821 0.91272 0.91478 0.93684 0.88752 0.91962 0.84432 0.82630 0.83401 0.84292 0.89939 0.90913 0.97861 0.94621 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.31 8.95 127.69 1.14 1.45 16 2 N -0.55 -12.61 4.45 -927.05 -4.13 -16.74 16 3 C 0.09 1.64 5.12 85.56 0.44 2.08 16 4 C -0.08 -1.43 4.88 -19.86 -0.10 -1.53 16 5 C -0.07 -1.24 9.70 22.27 0.22 -1.03 16 6 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 7 C -0.08 -1.17 9.40 22.27 0.21 -0.96 16 8 C -0.20 -3.42 5.45 -19.87 -0.11 -3.53 16 9 C 0.51 9.23 3.36 71.23 0.24 9.47 16 10 F -0.18 -3.39 17.30 44.97 0.78 -2.61 16 11 F -0.18 -3.31 16.46 44.97 0.74 -2.57 16 12 F -0.18 -3.51 16.46 44.97 0.74 -2.77 16 13 C -0.07 -1.20 7.32 22.27 0.16 -1.04 16 14 C 0.07 1.88 4.32 86.30 0.37 2.25 16 15 C 0.02 0.67 2.14 -12.60 -0.03 0.65 16 16 H 0.11 3.67 6.26 -2.38 -0.01 3.66 16 17 C 0.27 10.71 13.67 89.44 1.22 11.94 16 18 N -0.51 -22.70 18.54 20.01 0.37 -22.32 16 19 C 0.04 1.74 4.42 29.85 0.13 1.88 16 20 C -0.54 -28.22 8.60 25.60 0.22 -28.00 16 21 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 22 C 0.01 0.70 5.46 84.66 0.46 1.16 16 23 N -0.92 -52.28 13.29 21.45 0.28 -52.00 16 24 Si 0.95 43.05 29.54 68.60 2.03 45.08 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 H 0.07 1.40 6.17 -2.38 -0.01 1.39 16 29 H 0.07 1.53 6.21 -2.39 -0.01 1.52 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 32 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 33 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.15 1.70 7.60 -2.91 -0.02 1.68 16 36 H 0.14 2.15 7.58 -2.91 -0.02 2.13 16 37 H 0.08 2.12 7.93 -2.39 -0.02 2.10 16 38 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 39 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 40 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -63.28 362.45 6.68 -56.60 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.06 Total: 4.04 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 4.81 Total: -6.71 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -3.47 Total: -91.06 kcal Atomic # 9 Polarization: -10.21 SS G_CDS: 2.26 Total: -7.95 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -63.28 6.68 -56.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076513946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.701 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds