Wall clock time and date at job start Tue Mar 31 2020 14:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99664 * 2 1 4 4 C 1.38820 * 120.01954 * 0.02708 * 3 2 1 5 5 C 1.38173 * 120.09477 * 179.97438 * 4 3 2 6 6 C 1.38150 * 120.13154 * 359.67344 * 5 4 3 7 7 C 1.38948 * 120.03129 * 0.59975 * 6 5 4 8 8 N 1.39719 * 120.04553 * 179.69395 * 7 6 5 9 9 C 1.38934 * 120.00392 * 4.89374 * 8 7 6 10 10 C 1.38936 * 120.18089 * 254.98192 * 9 8 7 11 11 C 1.37974 * 120.07075 * 179.97438 * 10 9 8 12 12 C 1.38628 * 120.43437 * 359.97438 * 11 10 9 13 13 C 1.37743 * 120.36088 * 0.02562 * 12 11 10 14 14 C 1.39786 * 119.91920 * 359.97438 * 13 12 11 15 15 C 1.47325 * 120.21479 * 180.02562 * 14 13 12 16 16 O 1.21640 * 120.00202 * 234.61800 * 15 14 13 17 17 N 1.34775 * 119.99737 * 54.61544 * 15 14 13 18 18 C 1.46491 * 120.00169 * 5.71728 * 17 15 14 19 19 C 1.36910 * 119.99725 * 185.71759 * 17 15 14 20 20 H 1.08000 * 120.00288 * 5.23940 * 19 17 15 21 21 C 1.39019 * 120.00011 * 185.23475 * 19 17 15 22 22 N 1.31392 * 119.99621 * 5.24435 * 21 19 17 23 23 Si 1.86799 * 120.00203 * 185.24263 * 21 19 17 24 24 H 1.48498 * 109.46967 * 90.00155 * 23 21 19 25 25 H 1.48498 * 109.46998 * 209.99907 * 23 21 19 26 26 H 1.48495 * 109.47154 * 330.00085 * 23 21 19 27 27 C 1.38566 * 120.01319 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46907 * 59.99640 * 1 2 3 29 29 H 1.08996 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46896 * 299.99457 * 1 2 3 31 31 H 1.08001 * 119.95020 * 359.96964 * 4 3 2 32 32 H 1.08000 * 119.93457 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.98559 * 180.31917 * 6 5 4 34 34 H 0.97001 * 119.99535 * 184.89149 * 8 7 6 35 35 H 1.08007 * 119.96793 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.77990 * 180.27782 * 11 10 9 37 37 H 1.07997 * 119.81980 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.04275 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47358 * 355.12633 * 18 17 15 40 40 H 1.08999 * 109.47195 * 115.12819 * 18 17 15 41 41 H 1.09004 * 109.47427 * 235.12740 * 18 17 15 42 42 H 0.96999 * 119.99794 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.06722 * 0.04396 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2902 2.3754 0.0006 5 6 1.9158 3.6074 0.0011 6 6 3.2951 3.6848 0.0079 7 6 4.0569 2.5227 0.0016 8 7 5.4519 2.6006 0.0020 9 6 6.0787 3.8357 0.1113 10 6 6.6660 4.4220 -1.0030 11 6 7.2874 5.6489 -0.8920 12 6 7.3310 6.3061 0.3278 13 6 6.7546 5.7413 1.4440 14 6 6.1211 4.4988 1.3485 15 6 5.5019 3.8890 2.5381 16 8 5.8170 2.7646 2.8790 17 7 4.5862 4.5768 3.2487 18 6 4.1142 5.8783 2.7698 19 6 4.0974 4.0592 4.4181 20 1 4.5058 3.1415 4.8149 21 6 3.0752 4.7149 5.0948 22 7 2.5080 5.7735 4.5618 23 14 2.5082 4.0911 6.7617 24 1 3.3013 4.7476 7.8318 25 1 1.0695 4.4090 6.9460 26 1 2.7033 2.6207 6.8324 27 6 3.4297 1.2839 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2117 2.3183 0.0005 32 1 1.3253 4.5117 0.0020 33 1 3.7817 4.6490 0.0135 34 1 5.9827 1.7924 -0.0740 35 1 6.6361 3.9169 -1.9572 36 1 7.7385 6.1024 -1.7622 37 1 7.8204 7.2659 0.4035 38 1 6.7912 6.2580 2.3916 39 1 4.6738 6.1624 1.8786 40 1 3.0535 5.8133 2.5273 41 1 4.2639 6.6276 3.5471 42 1 1.7946 6.2308 5.0337 43 1 4.0192 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076587550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:26 Heat of formation + Delta-G solvation = 13.913319 kcal Electronic energy + Delta-G solvation = -28258.700715 eV Core-core repulsion = 24463.355227 eV Total energy + Delta-G solvation = -3795.345488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16008 -39.39240 -37.69764 -37.17866 -34.89189 -34.38716 -31.80948 -30.69508 -30.50461 -29.54427 -27.80343 -26.89958 -26.29210 -24.69052 -22.70479 -22.54423 -22.10451 -20.78841 -19.28327 -17.96495 -17.16466 -16.91750 -16.39390 -15.79018 -15.55632 -15.47681 -15.24393 -15.10106 -14.89185 -14.24476 -14.01074 -13.62089 -13.38868 -13.17623 -12.97278 -12.68672 -12.58014 -12.29740 -12.01647 -11.80048 -11.58675 -11.46513 -11.31551 -11.09645 -10.99178 -10.84405 -10.78565 -10.55579 -10.36961 -10.19571 -9.77233 -9.05934 -8.60268 -8.54352 -8.24080 -7.92019 -7.83163 -7.07141 -6.25445 -3.78078 1.41124 1.55958 1.94227 2.04977 3.15171 3.23388 3.29941 3.37626 3.74036 3.93015 4.07575 4.20987 4.33254 4.87247 5.13673 5.13842 5.17411 5.27814 5.29094 5.34502 5.44485 5.46158 5.59083 5.68746 5.73743 5.74711 5.78982 5.94418 6.03761 6.21901 6.30040 6.42410 6.55220 6.68204 6.71565 6.72170 6.80855 6.91359 7.00769 7.09274 7.13620 7.43121 7.55496 7.69307 7.87822 8.05423 8.09101 8.49534 9.19407 9.44306 10.00684 10.67763 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.007089 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.167934 B = 3948.577054 C = 6659.234819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.321 6.321 3 C 0.163 3.837 4 C -0.260 4.260 5 C -0.032 4.032 6 C -0.205 4.205 7 C 0.261 3.739 8 N -0.685 5.685 9 C 0.172 3.828 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.126 4.126 13 C -0.091 4.091 14 C -0.086 4.086 15 C 0.473 3.527 16 O -0.587 6.587 17 N -0.428 5.428 18 C 0.110 3.890 19 C -0.292 4.292 20 H 0.104 0.896 21 C 0.028 3.972 22 N -0.881 5.881 23 Si 0.929 3.071 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.219 4.219 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.408 0.592 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.266 0.734 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.284 -0.091 -12.160 12.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.117 3.883 4 C -0.281 4.281 5 C -0.051 4.051 6 C -0.227 4.227 7 C 0.159 3.841 8 N -0.310 5.310 9 C 0.077 3.923 10 C -0.148 4.148 11 C -0.134 4.134 12 C -0.144 4.144 13 C -0.110 4.110 14 C -0.091 4.091 15 C 0.261 3.739 16 O -0.473 6.473 17 N -0.144 5.144 18 C -0.033 4.033 19 C -0.420 4.420 20 H 0.121 0.879 21 C -0.175 4.175 22 N -0.522 5.522 23 Si 0.756 3.244 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.242 4.242 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.245 0.755 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.353 -0.538 -11.872 11.890 hybrid contribution -0.458 -0.154 0.975 1.088 sum -0.105 -0.692 -10.897 10.920 Atomic orbital electron populations 1.22975 0.78878 1.03229 1.01377 1.86009 1.21017 1.27538 1.88929 1.18516 0.91449 0.83706 0.94605 1.20873 0.99286 0.92303 1.15623 1.20565 0.93769 0.96710 0.94040 1.20518 0.93807 0.96800 1.11617 1.17327 0.82674 0.92953 0.91139 1.41430 1.02662 1.06340 1.80587 1.17308 0.96341 0.87351 0.91278 1.21270 1.00124 0.95920 0.97486 1.20978 0.99938 0.94924 0.97599 1.21045 1.00473 1.00126 0.92771 1.21302 0.96665 0.93961 0.99120 1.20776 0.98929 0.94974 0.94440 1.17518 0.85249 0.86618 0.84496 1.90618 1.66570 1.18941 1.71195 1.43578 1.34375 1.16827 1.19627 1.21906 0.99893 0.85138 0.96353 1.19807 1.16232 1.09071 0.96860 0.87872 1.25318 0.96014 0.96119 1.00011 1.70148 1.24822 1.19476 1.37711 0.85860 0.77711 0.79405 0.81406 1.20332 1.20826 1.19371 1.19519 0.91685 0.96482 1.16540 0.92916 0.88796 0.92621 0.86299 0.86141 0.86399 0.75502 0.85845 0.86054 0.85941 0.85467 0.95442 0.90589 0.91996 0.92351 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.32 -5.21 10.49 -19.44 -0.20 -5.42 16 3 C 0.16 2.92 6.68 -39.25 -0.26 2.65 16 4 C -0.26 -4.43 9.04 -39.39 -0.36 -4.79 16 5 C -0.03 -0.57 10.03 -39.64 -0.40 -0.96 16 6 C -0.21 -3.91 8.98 -39.35 -0.35 -4.26 16 7 C 0.26 4.97 6.09 -83.77 -0.51 4.46 16 8 N -0.68 -12.23 4.62 -8.24 -0.04 -12.27 16 9 C 0.17 3.04 4.58 -83.56 -0.38 2.66 16 10 C -0.13 -1.81 9.96 -39.42 -0.39 -2.21 16 11 C -0.12 -1.45 10.03 -39.53 -0.40 -1.85 16 12 C -0.13 -1.70 10.02 -39.62 -0.40 -2.10 16 13 C -0.09 -1.55 7.55 -39.18 -0.30 -1.85 16 14 C -0.09 -1.73 4.13 -104.80 -0.43 -2.16 16 15 C 0.47 11.87 6.07 -12.57 -0.08 11.79 16 16 O -0.59 -16.78 16.32 5.24 0.09 -16.69 16 17 N -0.43 -11.08 3.02 -123.46 -0.37 -11.46 16 18 C 0.11 2.54 8.26 59.84 0.49 3.04 16 19 C -0.29 -8.21 9.55 -14.99 -0.14 -8.36 16 20 H 0.10 3.08 7.20 -52.49 -0.38 2.71 16 21 C 0.03 0.73 5.42 -17.45 -0.09 0.64 16 22 N -0.88 -22.96 9.52 55.50 0.53 -22.43 16 23 Si 0.93 21.03 29.56 -169.99 -5.02 16.00 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.22 -4.08 9.84 -39.23 -0.39 -4.47 16 28 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.12 1.71 6.29 -52.49 -0.33 1.38 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.12 2.27 6.71 -52.49 -0.35 1.92 16 34 H 0.41 6.61 8.84 -40.82 -0.36 6.25 16 35 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.13 2.17 7.78 -52.49 -0.41 1.76 16 39 H 0.03 0.55 4.81 -51.93 -0.25 0.30 16 40 H 0.08 1.87 6.88 -51.93 -0.36 1.52 16 41 H 0.06 1.47 7.24 -51.93 -0.38 1.10 16 42 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 43 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 358.70 15.07 5.41 5.41 Total: -1.00 -32.58 358.70 -8.29 -40.87 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.28 Total: 12.40 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -3.39 Total: -6.42 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.12 Total: -46.15 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.12 Total: -22.11 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.58 -8.29 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076587550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.788 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds