Wall clock time and date at job start Tue Mar 31 2020 14:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35905 * 116.99664 * 2 1 4 4 C 1.38820 * 120.01954 * 0.02708 * 3 2 1 5 5 C 1.38173 * 120.09477 * 179.97438 * 4 3 2 6 6 C 1.38150 * 120.13154 * 359.67344 * 5 4 3 7 7 C 1.38948 * 120.03129 * 0.59975 * 6 5 4 8 8 N 1.39719 * 120.04553 * 179.69395 * 7 6 5 9 9 C 1.38934 * 120.00392 * 4.89374 * 8 7 6 10 10 C 1.38936 * 120.18089 * 254.98192 * 9 8 7 11 11 C 1.37974 * 120.07075 * 179.97438 * 10 9 8 12 12 C 1.38628 * 120.43437 * 359.97438 * 11 10 9 13 13 C 1.37743 * 120.36088 * 0.02562 * 12 11 10 14 14 C 1.39786 * 119.91920 * 359.97438 * 13 12 11 15 15 C 1.47325 * 120.21479 * 180.02562 * 14 13 12 16 16 O 1.21640 * 120.00202 * 234.61800 * 15 14 13 17 17 N 1.34775 * 119.99737 * 54.61544 * 15 14 13 18 18 C 1.46491 * 120.00169 * 5.71728 * 17 15 14 19 19 C 1.36910 * 119.99725 * 185.71759 * 17 15 14 20 20 H 1.08000 * 120.00288 * 5.23940 * 19 17 15 21 21 C 1.39019 * 120.00011 * 185.23475 * 19 17 15 22 22 N 1.31392 * 119.99621 * 5.24435 * 21 19 17 23 23 Si 1.86799 * 120.00203 * 185.24263 * 21 19 17 24 24 H 1.48498 * 109.46967 * 90.00155 * 23 21 19 25 25 H 1.48498 * 109.46998 * 209.99907 * 23 21 19 26 26 H 1.48495 * 109.47154 * 330.00085 * 23 21 19 27 27 C 1.38566 * 120.01319 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46907 * 59.99640 * 1 2 3 29 29 H 1.08996 * 109.46716 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46896 * 299.99457 * 1 2 3 31 31 H 1.08001 * 119.95020 * 359.96964 * 4 3 2 32 32 H 1.08000 * 119.93457 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.98559 * 180.31917 * 6 5 4 34 34 H 0.97001 * 119.99535 * 184.89149 * 8 7 6 35 35 H 1.08007 * 119.96793 * 359.97438 * 10 9 8 36 36 H 1.07997 * 119.77990 * 180.27782 * 11 10 9 37 37 H 1.07997 * 119.81980 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.04275 * 180.02562 * 13 12 11 39 39 H 1.09002 * 109.47358 * 355.12633 * 18 17 15 40 40 H 1.08999 * 109.47195 * 115.12819 * 18 17 15 41 41 H 1.09004 * 109.47427 * 235.12740 * 18 17 15 42 42 H 0.96999 * 119.99794 * 179.97438 * 22 21 19 43 43 H 1.07997 * 120.06722 * 0.04396 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2902 2.3754 0.0006 5 6 1.9158 3.6074 0.0011 6 6 3.2951 3.6848 0.0079 7 6 4.0569 2.5227 0.0016 8 7 5.4519 2.6006 0.0020 9 6 6.0787 3.8357 0.1113 10 6 6.6660 4.4220 -1.0030 11 6 7.2874 5.6489 -0.8920 12 6 7.3310 6.3061 0.3278 13 6 6.7546 5.7413 1.4440 14 6 6.1211 4.4988 1.3485 15 6 5.5019 3.8890 2.5381 16 8 5.8170 2.7646 2.8790 17 7 4.5862 4.5768 3.2487 18 6 4.1142 5.8783 2.7698 19 6 4.0974 4.0592 4.4181 20 1 4.5058 3.1415 4.8149 21 6 3.0752 4.7149 5.0948 22 7 2.5080 5.7735 4.5618 23 14 2.5082 4.0911 6.7617 24 1 3.3013 4.7476 7.8318 25 1 1.0695 4.4090 6.9460 26 1 2.7033 2.6207 6.8324 27 6 3.4297 1.2839 -0.0005 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2117 2.3183 0.0005 32 1 1.3253 4.5117 0.0020 33 1 3.7817 4.6490 0.0135 34 1 5.9827 1.7924 -0.0740 35 1 6.6361 3.9169 -1.9572 36 1 7.7385 6.1024 -1.7622 37 1 7.8204 7.2659 0.4035 38 1 6.7912 6.2580 2.3916 39 1 4.6738 6.1624 1.8786 40 1 3.0535 5.8133 2.5273 41 1 4.2639 6.6276 3.5471 42 1 1.7946 6.2308 5.0337 43 1 4.0192 0.3790 -0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076587550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:25 Heat of formation + Delta-G solvation = -5.861680 kcal Electronic energy + Delta-G solvation = -28259.558223 eV Core-core repulsion = 24463.355227 eV Total energy + Delta-G solvation = -3796.202996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57457 -40.76519 -39.37068 -38.48838 -36.73015 -35.88211 -33.72430 -32.01078 -31.95044 -30.82968 -29.13575 -28.23872 -27.95979 -26.53926 -24.20695 -23.86223 -23.41552 -22.16474 -20.88318 -19.27928 -19.00794 -18.41245 -18.08603 -17.12646 -16.95528 -16.69726 -16.64215 -16.47235 -16.42362 -16.00078 -15.52167 -15.23296 -14.90864 -14.53508 -14.33766 -14.22056 -13.90196 -13.82487 -13.53216 -13.31720 -13.09920 -12.85629 -12.78634 -12.69073 -12.58617 -12.32611 -12.24759 -12.16936 -12.06184 -11.82793 -11.11352 -11.06430 -10.41831 -9.88164 -9.78979 -9.66625 -9.28875 -8.44463 -8.26076 -5.89895 0.13106 0.34245 0.54077 0.67758 1.33973 1.36171 1.48444 2.05976 2.16159 2.23344 2.67978 2.76764 2.93313 3.08866 3.18806 3.91557 3.97232 4.01929 4.20036 4.22679 4.26853 4.28325 4.40106 4.45490 4.51887 4.54787 4.58928 4.65096 4.71198 4.74394 4.94735 5.02627 5.15661 5.30893 5.35940 5.40736 5.42668 5.47936 5.53052 5.54399 5.58767 5.65717 5.94438 6.03119 6.40520 6.47504 6.54097 6.75643 7.15708 7.47247 8.03942 8.64702 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007580 B = 0.007089 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.167934 B = 3948.577054 C = 6659.234819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.336 6.336 3 C 0.157 3.843 4 C -0.264 4.264 5 C -0.040 4.040 6 C -0.223 4.223 7 C 0.249 3.751 8 N -0.687 5.687 9 C 0.159 3.841 10 C -0.122 4.122 11 C -0.091 4.091 12 C -0.112 4.112 13 C -0.103 4.103 14 C -0.125 4.125 15 C 0.474 3.526 16 O -0.636 6.636 17 N -0.442 5.442 18 C 0.131 3.869 19 C -0.337 4.337 20 H 0.070 0.930 21 C 0.000 4.000 22 N -0.888 5.888 23 Si 0.987 3.013 24 H -0.266 1.266 25 H -0.266 1.266 26 H -0.281 1.281 27 C -0.244 4.244 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.054 0.946 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.112 0.888 34 H 0.410 0.590 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.272 0.728 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 1.547 -14.133 14.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.111 3.889 4 C -0.284 4.284 5 C -0.059 4.059 6 C -0.245 4.245 7 C 0.147 3.853 8 N -0.312 5.312 9 C 0.065 3.935 10 C -0.141 4.141 11 C -0.109 4.109 12 C -0.130 4.130 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.264 3.736 16 O -0.525 6.525 17 N -0.158 5.158 18 C -0.012 4.012 19 C -0.465 4.465 20 H 0.088 0.912 21 C -0.201 4.201 22 N -0.528 5.528 23 Si 0.811 3.189 24 H -0.191 1.191 25 H -0.191 1.191 26 H -0.206 1.206 27 C -0.267 4.267 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.248 0.752 35 H 0.168 0.832 36 H 0.188 0.812 37 H 0.180 0.820 38 H 0.136 0.864 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.083 0.917 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.315 1.139 -13.866 13.916 hybrid contribution -0.405 -0.675 1.477 1.673 sum -0.090 0.464 -12.390 12.399 Atomic orbital electron populations 1.23333 0.76409 1.05495 1.02171 1.85994 1.23591 1.26807 1.88621 1.18691 0.91466 0.84715 0.93990 1.21167 1.00665 0.91681 1.14932 1.20881 0.93622 0.97870 0.93524 1.20578 0.94511 0.96504 1.12910 1.17514 0.83344 0.93181 0.91265 1.41502 1.02406 1.06924 1.80388 1.17596 0.97040 0.87262 0.91649 1.21577 0.98910 0.96521 0.97126 1.21553 0.97211 0.93473 0.98673 1.21452 0.98739 1.01207 0.91582 1.21345 0.97421 0.93015 1.00423 1.20499 1.01945 0.97194 0.93332 1.18337 0.84066 0.85929 0.85250 1.90553 1.67843 1.21243 1.72888 1.43708 1.34805 1.17762 1.19500 1.21677 0.99010 0.83660 0.96843 1.19650 1.18350 1.09270 0.99188 0.91236 1.25987 0.95293 0.96115 1.02731 1.70228 1.24591 1.19445 1.38501 0.85025 0.78064 0.78112 0.77696 1.19129 1.19091 1.20636 1.19744 0.92608 0.96628 1.17707 0.91084 0.85949 0.92748 0.83640 0.84338 0.86997 0.75219 0.83238 0.81229 0.82005 0.86379 0.92550 0.92497 0.93292 0.91713 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.34 -10.84 10.49 -92.48 -0.97 -11.82 16 3 C 0.16 5.72 6.68 22.49 0.15 5.87 16 4 C -0.26 -8.92 9.04 22.39 0.20 -8.72 16 5 C -0.04 -1.43 10.03 22.23 0.22 -1.21 16 6 C -0.22 -8.67 8.98 22.42 0.20 -8.47 16 7 C 0.25 9.83 6.09 38.20 0.23 10.06 16 8 N -0.69 -25.23 4.62 -179.98 -0.83 -26.06 16 9 C 0.16 5.56 4.58 38.72 0.18 5.74 16 10 C -0.12 -3.07 9.96 22.37 0.22 -2.84 16 11 C -0.09 -1.81 10.03 22.30 0.22 -1.58 16 12 C -0.11 -2.56 10.02 22.25 0.22 -2.34 16 13 C -0.10 -3.39 7.55 22.53 0.17 -3.22 16 14 C -0.12 -5.09 4.13 -19.98 -0.08 -5.17 16 15 C 0.47 25.04 6.07 86.63 0.53 25.57 16 16 O -0.64 -38.82 16.32 -4.16 -0.07 -38.89 16 17 N -0.44 -24.04 3.02 -662.77 -2.00 -26.04 16 18 C 0.13 6.21 8.26 127.77 1.06 7.26 16 19 C -0.34 -20.02 9.55 84.09 0.80 -19.22 16 20 H 0.07 4.49 7.20 -2.91 -0.02 4.47 16 21 C 0.00 0.02 5.42 84.95 0.46 0.48 16 22 N -0.89 -46.88 9.52 21.68 0.21 -46.67 16 23 Si 0.99 43.88 29.56 68.60 2.03 45.91 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 27 C -0.24 -9.46 9.84 22.50 0.22 -9.24 16 28 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 29 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.19 7.66 -2.39 -0.02 1.17 16 31 H 0.15 3.97 6.29 -2.91 -0.02 3.95 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.11 4.39 6.71 -2.91 -0.02 4.37 16 34 H 0.41 13.92 8.84 -92.71 -0.82 13.10 16 35 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 36 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.12 4.03 7.78 -2.91 -0.02 4.01 16 39 H 0.06 2.30 4.81 -2.39 -0.01 2.29 16 40 H 0.06 2.88 6.88 -2.39 -0.02 2.86 16 41 H 0.05 2.39 7.24 -2.39 -0.02 2.37 16 42 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 43 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -76.42 358.70 4.72 -71.70 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.23 Total: 37.36 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 6.12 Total: -5.49 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -2.63 Total: -98.77 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -1.04 Total: -50.71 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.42 4.72 -71.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076587550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.838 kcal (2) G-P(sol) polarization free energy of solvation -76.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds