Wall clock time and date at job start Tue Mar 31 2020 14:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99770 * 2 1 4 4 C 1.50702 * 109.47198 * 270.00042 * 3 2 1 5 5 C 1.34847 * 125.89003 * 264.69338 * 4 3 2 6 6 C 1.40885 * 107.42000 * 179.88547 * 5 4 3 7 7 C 1.34854 * 107.41483 * 0.37505 * 6 5 4 8 8 N 1.36335 * 108.21806 * 359.77277 * 7 6 5 9 9 H 0.97002 * 125.63732 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00081 * 179.97438 * 2 1 3 11 11 O 1.21722 * 119.99697 * 180.02562 * 10 2 1 12 12 C 1.46250 * 120.00046 * 359.97438 * 10 2 1 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 2 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47157 * 89.99783 * 23 21 19 25 25 H 1.48507 * 109.47385 * 209.99705 * 23 21 19 26 26 H 1.48501 * 109.47369 * 329.99939 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47078 * 269.99792 * 1 2 3 30 30 H 1.09002 * 109.47281 * 30.00575 * 1 2 3 31 31 H 1.09001 * 109.46981 * 150.00257 * 1 2 3 32 32 H 1.09007 * 109.47233 * 29.99742 * 3 2 1 33 33 H 1.08997 * 109.47380 * 149.99568 * 3 2 1 34 34 H 1.08007 * 126.28752 * 0.02562 * 5 4 3 35 35 H 1.08007 * 126.29444 * 180.13030 * 6 5 4 36 36 H 1.08001 * 125.88973 * 179.74317 * 7 6 5 37 37 H 1.07990 * 120.00180 * 359.97438 * 12 10 2 38 38 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 39 39 H 1.08005 * 120.04947 * 359.97438 * 15 14 13 40 40 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 41 41 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 42 42 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.5701 1.4707 -2.1325 6 6 3.3874 2.0427 -3.4070 7 6 2.1645 2.6108 -3.4228 8 7 1.5836 2.4061 -2.2065 9 1 0.7005 2.7096 -1.9437 10 6 2.1389 -1.1671 0.0005 11 8 3.3561 -1.1671 0.0010 12 6 1.4077 -2.4337 0.0017 13 6 2.0829 -3.6031 0.0027 14 6 1.3482 -4.8758 -0.0022 15 6 -0.0520 -4.8784 0.0036 16 6 -0.7358 -6.0724 -0.0055 17 6 -0.0376 -7.2764 -0.0103 18 8 -0.7155 -8.4505 -0.0144 19 6 0.0137 -9.5776 -0.1356 20 1 1.0924 -9.5249 -0.1416 21 6 -0.6213 -10.8054 -0.2526 22 7 -1.9348 -10.8696 -0.2448 23 14 0.3892 -12.3672 -0.4213 24 1 0.6722 -12.9218 0.9270 25 1 -0.3702 -13.3647 -1.2173 26 1 1.6691 -12.0571 -1.1075 27 6 1.3541 -7.2788 -0.0112 28 6 2.0462 -6.0896 -0.0069 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.4463 0.9407 -1.7892 35 1 4.0979 2.0319 -4.2204 36 1 1.7218 3.1376 -4.2553 37 1 0.3278 -2.4338 0.0025 38 1 3.1629 -3.6030 0.0023 39 1 -0.5946 -3.9445 0.0121 40 1 -1.8157 -6.0754 -0.0048 41 1 -2.3788 -11.7282 -0.3263 42 1 1.8916 -8.2155 -0.0145 43 1 3.1262 -6.0924 -0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080973940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:04 Heat of formation + Delta-G solvation = 33.368933 kcal Electronic energy + Delta-G solvation = -25440.411535 eV Core-core repulsion = 21645.909706 eV Total energy + Delta-G solvation = -3794.501829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29618 -39.63608 -39.12107 -36.91597 -35.62459 -33.27433 -32.33740 -31.07655 -30.80254 -30.42563 -28.23466 -27.06740 -25.95559 -25.38817 -22.91803 -22.09472 -20.87970 -20.43811 -20.19398 -18.78566 -18.05513 -17.76494 -17.25064 -16.97442 -16.17348 -15.25645 -14.91685 -14.78481 -14.42420 -14.20913 -13.87377 -13.83390 -13.72413 -13.56319 -13.28909 -13.13337 -13.05655 -12.76663 -12.68144 -12.52020 -12.35383 -11.90547 -11.79104 -11.75927 -11.53943 -11.12924 -11.07167 -10.67685 -10.54037 -9.77302 -9.59468 -9.49469 -8.97890 -8.92076 -8.81766 -8.38616 -8.21774 -7.11534 -6.65496 -4.20322 1.07358 1.96912 2.13104 2.55655 2.79723 3.03639 3.04728 3.09549 3.11623 3.24690 3.59207 3.82117 4.50776 4.58356 4.70846 4.84545 4.92009 4.95978 5.02549 5.03589 5.19699 5.26959 5.36283 5.43645 5.47296 5.53426 5.60964 5.65607 5.67621 6.00661 6.09862 6.12094 6.24405 6.27252 6.46443 6.51863 6.61260 6.79098 6.84483 6.91517 6.98933 7.12723 7.23225 7.26788 7.38068 7.39993 7.63575 7.79926 8.30709 8.79378 9.46253 10.51129 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.001900 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.523478 B =14732.944784 C =14912.273030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.619 5.619 3 C 0.187 3.813 4 C -0.008 4.008 5 C -0.169 4.169 6 C -0.204 4.204 7 C -0.014 4.014 8 N -0.556 5.556 9 H 0.409 0.591 10 C 0.560 3.440 11 O -0.549 6.549 12 C -0.285 4.285 13 C 0.039 3.961 14 C -0.198 4.198 15 C -0.043 4.043 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.041 3.959 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.265 1.265 27 C -0.242 4.242 28 C -0.035 4.035 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.274 0.726 42 H 0.131 0.869 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 22.955 -1.505 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.353 5.353 3 C 0.063 3.937 4 C -0.121 4.121 5 C -0.195 4.195 6 C -0.229 4.229 7 C -0.145 4.145 8 N -0.151 5.151 9 H 0.245 0.755 10 C 0.354 3.646 11 O -0.429 6.429 12 C -0.306 4.306 13 C 0.020 3.980 14 C -0.199 4.199 15 C -0.061 4.061 16 C -0.219 4.219 17 C 0.110 3.890 18 O -0.063 6.063 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.769 3.231 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.189 1.189 27 C -0.261 4.261 28 C -0.053 4.053 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.179 0.821 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.084 0.916 42 H 0.149 0.851 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.825 22.721 -1.442 23.086 hybrid contribution -0.111 -0.588 -0.166 0.621 sum 3.715 22.133 -1.608 22.500 Atomic orbital electron populations 1.21791 0.79704 1.02897 1.01814 1.47768 1.06657 1.05565 1.75259 1.19748 0.99090 0.84791 0.90023 1.20752 0.92256 1.03513 0.95573 1.20845 0.98844 1.05302 0.94468 1.20956 0.97588 1.05743 0.98615 1.21809 0.96010 1.07599 0.89121 1.41945 1.16095 1.45079 1.12020 0.75530 1.18409 0.87134 0.84034 0.75065 1.90763 1.13792 1.87558 1.50781 1.22520 0.99991 0.91429 1.16619 1.22308 0.99300 0.90971 0.85470 1.18464 0.93057 0.92010 1.16385 1.20859 0.92956 0.96538 0.95768 1.20144 0.99652 0.89967 1.12122 1.19609 0.90738 0.87301 0.91316 1.83906 1.35516 1.11258 1.75668 1.21477 0.91461 0.81942 1.51960 0.88529 1.25397 0.96217 0.98862 0.96023 1.70015 1.07745 1.26769 1.43956 0.85645 0.79066 0.79524 0.78886 1.19633 1.20051 1.18933 1.21102 0.93999 0.98663 1.12349 1.20993 0.98593 0.91381 0.94323 0.92353 0.92235 0.90321 0.90336 0.87657 0.84566 0.84870 0.82108 0.85772 0.85925 0.86564 0.86151 0.91607 0.85108 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.15 59.85 0.61 1.22 16 2 N -0.62 -6.69 2.86 -184.67 -0.53 -7.22 16 3 C 0.19 1.78 5.94 -5.19 -0.03 1.75 16 4 C -0.01 -0.08 6.75 -81.79 -0.55 -0.64 16 5 C -0.17 -2.08 10.76 -39.78 -0.43 -2.51 16 6 C -0.20 -2.20 10.86 -39.78 -0.43 -2.63 16 7 C -0.01 -0.12 11.94 -16.75 -0.20 -0.32 16 8 N -0.56 -4.52 6.07 -9.12 -0.06 -4.57 16 9 H 0.41 2.06 8.96 -40.82 -0.37 1.69 16 10 C 0.56 8.05 7.60 -13.04 -0.10 7.95 16 11 O -0.55 -9.55 15.81 5.17 0.08 -9.47 16 12 C -0.28 -3.98 8.61 -37.50 -0.32 -4.30 16 13 C 0.04 0.61 9.45 -37.19 -0.35 0.25 16 14 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 15 C -0.04 -0.73 9.40 -39.14 -0.37 -1.10 16 16 C -0.20 -3.98 9.97 -39.47 -0.39 -4.37 16 17 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 18 O -0.16 -4.40 9.74 0.70 0.01 -4.40 16 19 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 20 H 0.10 2.36 5.18 -52.49 -0.27 2.08 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.81 13.67 55.48 0.76 -23.06 16 23 Si 0.94 19.53 29.55 -169.99 -5.02 14.50 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 27 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 28 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.08 0.61 6.10 -51.93 -0.32 0.30 16 32 H 0.08 0.51 8.07 -51.92 -0.42 0.09 16 33 H 0.11 1.14 7.42 -51.93 -0.39 0.75 16 34 H 0.14 1.79 8.06 -52.48 -0.42 1.37 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.16 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.49 4.21 -52.49 -0.22 1.27 16 38 H 0.12 1.89 7.52 -52.49 -0.39 1.49 16 39 H 0.12 1.60 6.16 -52.48 -0.32 1.28 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 41 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.13 2.68 5.62 -52.49 -0.29 2.39 16 43 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -32.47 370.94 -8.25 -40.72 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.08 Total: 8.57 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -3.99 Total: -20.67 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.18 Total: -34.84 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.87 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.47 -8.25 -40.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080973940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.087 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds