Wall clock time and date at job start Tue Mar 31 2020 14:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 119.99770 * 2 1 4 4 C 1.50702 * 109.47198 * 270.00042 * 3 2 1 5 5 C 1.34847 * 125.89003 * 264.69338 * 4 3 2 6 6 C 1.40885 * 107.42000 * 179.88547 * 5 4 3 7 7 C 1.34854 * 107.41483 * 0.37505 * 6 5 4 8 8 N 1.36335 * 108.21806 * 359.77277 * 7 6 5 9 9 H 0.97002 * 125.63732 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00081 * 179.97438 * 2 1 3 11 11 O 1.21722 * 119.99697 * 180.02562 * 10 2 1 12 12 C 1.46250 * 120.00046 * 359.97438 * 10 2 1 13 13 C 1.35031 * 119.99722 * 180.02562 * 12 10 2 14 14 C 1.46959 * 119.99896 * 180.27394 * 13 12 10 15 15 C 1.40027 * 120.10017 * 359.45143 * 14 13 12 16 16 C 1.37601 * 119.89863 * 179.78912 * 15 14 13 17 17 C 1.39178 * 120.09610 * 0.48118 * 16 15 14 18 18 O 1.35575 * 119.89259 * 179.76441 * 17 16 15 19 19 C 1.34788 * 116.99533 * 174.42515 * 18 17 16 20 20 H 1.08001 * 120.00124 * 5.05799 * 19 18 17 21 21 C 1.38720 * 119.99795 * 185.06035 * 19 18 17 22 22 N 1.31507 * 119.99773 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47157 * 89.99783 * 23 21 19 25 25 H 1.48507 * 109.47385 * 209.99705 * 23 21 19 26 26 H 1.48501 * 109.47369 * 329.99939 * 23 21 19 27 27 C 1.39170 * 120.20621 * 359.74800 * 17 16 15 28 28 C 1.37600 * 120.10262 * 0.02562 * 27 17 16 29 29 H 1.08999 * 109.47078 * 269.99792 * 1 2 3 30 30 H 1.09002 * 109.47281 * 30.00575 * 1 2 3 31 31 H 1.09001 * 109.46981 * 150.00257 * 1 2 3 32 32 H 1.09007 * 109.47233 * 29.99742 * 3 2 1 33 33 H 1.08997 * 109.47380 * 149.99568 * 3 2 1 34 34 H 1.08007 * 126.28752 * 0.02562 * 5 4 3 35 35 H 1.08007 * 126.29444 * 180.13030 * 6 5 4 36 36 H 1.08001 * 125.88973 * 179.74317 * 7 6 5 37 37 H 1.07990 * 120.00180 * 359.97438 * 12 10 2 38 38 H 1.08000 * 120.00105 * 359.97438 * 13 12 10 39 39 H 1.08005 * 120.04947 * 359.97438 * 15 14 13 40 40 H 1.07995 * 119.95289 * 180.22906 * 16 15 14 41 41 H 0.97004 * 119.99419 * 180.02562 * 22 21 19 42 42 H 1.07998 * 119.95118 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.05056 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 3.5701 1.4707 -2.1325 6 6 3.3874 2.0427 -3.4070 7 6 2.1645 2.6108 -3.4228 8 7 1.5836 2.4061 -2.2065 9 1 0.7005 2.7096 -1.9437 10 6 2.1389 -1.1671 0.0005 11 8 3.3561 -1.1671 0.0010 12 6 1.4077 -2.4337 0.0017 13 6 2.0829 -3.6031 0.0027 14 6 1.3482 -4.8758 -0.0022 15 6 -0.0520 -4.8784 0.0036 16 6 -0.7358 -6.0724 -0.0055 17 6 -0.0376 -7.2764 -0.0103 18 8 -0.7155 -8.4505 -0.0144 19 6 0.0137 -9.5776 -0.1356 20 1 1.0924 -9.5249 -0.1416 21 6 -0.6213 -10.8054 -0.2526 22 7 -1.9348 -10.8696 -0.2448 23 14 0.3892 -12.3672 -0.4213 24 1 0.6722 -12.9218 0.9270 25 1 -0.3702 -13.3647 -1.2173 26 1 1.6691 -12.0571 -1.1075 27 6 1.3541 -7.2788 -0.0112 28 6 2.0462 -6.0896 -0.0069 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5138 33 1 3.1499 1.1385 0.5139 34 1 4.4463 0.9407 -1.7892 35 1 4.0979 2.0319 -4.2204 36 1 1.7218 3.1376 -4.2553 37 1 0.3278 -2.4338 0.0025 38 1 3.1629 -3.6030 0.0023 39 1 -0.5946 -3.9445 0.0121 40 1 -1.8157 -6.0754 -0.0048 41 1 -2.3788 -11.7282 -0.3263 42 1 1.8916 -8.2155 -0.0145 43 1 3.1262 -6.0924 -0.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080973940.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:03 Heat of formation + Delta-G solvation = 13.916540 kcal Electronic energy + Delta-G solvation = -25441.255054 eV Core-core repulsion = 21645.909706 eV Total energy + Delta-G solvation = -3795.345348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05622 -40.91642 -40.54890 -38.50967 -36.60725 -34.77330 -34.03603 -31.98428 -31.83382 -31.64459 -29.62066 -27.76939 -27.57033 -26.56874 -24.25685 -23.59599 -21.91781 -21.44095 -21.04589 -20.21305 -19.43226 -18.82681 -18.60235 -18.17108 -17.15818 -16.47508 -16.35575 -16.12330 -15.93011 -15.61662 -15.30603 -14.97865 -14.67411 -14.60161 -14.38237 -14.28310 -14.09976 -13.96593 -13.62315 -13.49491 -13.40669 -13.30830 -13.15018 -12.92308 -12.70809 -12.57224 -12.42266 -12.17563 -12.12678 -11.21918 -11.11035 -10.92640 -10.56899 -9.89654 -9.76839 -9.73768 -8.99291 -8.67973 -8.52386 -6.18354 -0.25180 0.58126 1.11543 1.21689 1.35787 1.45744 1.52802 1.98173 2.15178 2.34101 2.36999 2.51892 2.86277 3.17550 3.41943 3.64398 3.92707 3.95840 4.07475 4.11928 4.23178 4.30709 4.35433 4.45361 4.47384 4.56319 4.64865 4.65808 4.77769 4.83481 4.92361 4.95128 5.03414 5.19139 5.22985 5.33219 5.33522 5.42859 5.51575 5.61049 5.63949 5.80668 5.97196 6.03642 6.09853 6.18373 6.40591 6.82361 6.92047 7.22157 7.68932 8.69573 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.027033 B = 0.001900 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.523478 B =14732.944784 C =14912.273030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.186 3.814 4 C -0.010 4.010 5 C -0.207 4.207 6 C -0.235 4.235 7 C 0.002 3.998 8 N -0.541 5.541 9 H 0.428 0.572 10 C 0.547 3.453 11 O -0.586 6.586 12 C -0.248 4.248 13 C 0.015 3.985 14 C -0.170 4.170 15 C -0.037 4.037 16 C -0.206 4.206 17 C 0.130 3.870 18 O -0.219 6.219 19 C -0.417 4.417 20 H 0.105 0.895 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.253 1.253 27 C -0.249 4.249 28 C -0.041 4.041 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.197 0.803 37 H 0.153 0.847 38 H 0.122 0.878 39 H 0.159 0.841 40 H 0.124 0.876 41 H 0.275 0.725 42 H 0.125 0.875 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.601 26.768 -1.727 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C 0.063 3.937 4 C -0.124 4.124 5 C -0.233 4.233 6 C -0.260 4.260 7 C -0.131 4.131 8 N -0.138 5.138 9 H 0.267 0.733 10 C 0.340 3.660 11 O -0.469 6.469 12 C -0.268 4.268 13 C -0.005 4.005 14 C -0.171 4.171 15 C -0.054 4.054 16 C -0.225 4.225 17 C 0.078 3.922 18 O -0.124 6.124 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.218 4.218 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.187 1.187 25 H -0.195 1.195 26 H -0.177 1.177 27 C -0.268 4.268 28 C -0.059 4.059 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.214 0.786 37 H 0.170 0.830 38 H 0.140 0.860 39 H 0.177 0.823 40 H 0.142 0.858 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.623 26.636 -1.653 26.932 hybrid contribution 0.100 -1.061 -0.101 1.070 sum 3.724 25.575 -1.755 25.904 Atomic orbital electron populations 1.22123 0.77133 1.04442 1.03549 1.47843 1.08257 1.04865 1.73124 1.19868 0.99062 0.85045 0.89752 1.20721 0.92139 1.03596 0.95923 1.20901 0.99346 1.06963 0.96095 1.21177 0.99223 1.07166 0.98409 1.22303 0.95026 1.05936 0.89820 1.41911 1.16509 1.43930 1.11406 0.73316 1.18594 0.86799 0.85264 0.75299 1.90766 1.15500 1.88209 1.52387 1.22867 1.01293 0.90846 1.11827 1.22188 0.99385 0.90562 0.88358 1.18772 0.93331 0.92507 1.12491 1.21258 0.93017 0.97039 0.94134 1.20422 1.00198 0.90027 1.11830 1.20185 0.92014 0.87391 0.92627 1.83887 1.36649 1.12289 1.79558 1.21889 0.92044 0.82619 1.52676 0.87764 1.26603 0.97412 1.02168 0.95571 1.70147 1.09714 1.27544 1.47568 0.84590 0.77623 0.74871 0.79201 1.18742 1.19537 1.17686 1.21197 0.93410 0.99668 1.12518 1.21308 1.00145 0.90653 0.93792 0.90482 0.89401 0.90252 0.86362 0.89584 0.87021 0.84542 0.78613 0.83019 0.86011 0.82319 0.85759 0.91589 0.85774 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.15 127.77 1.30 1.95 16 2 N -0.61 -10.80 2.86 -856.37 -2.45 -13.25 16 3 C 0.19 2.97 5.94 85.63 0.51 3.48 16 4 C -0.01 -0.18 6.75 41.08 0.28 0.09 16 5 C -0.21 -5.04 10.76 22.14 0.24 -4.81 16 6 C -0.24 -4.80 10.86 22.14 0.24 -4.56 16 7 C 0.00 0.02 11.94 83.22 0.99 1.02 16 8 N -0.54 -6.65 6.07 -182.77 -1.11 -7.76 16 9 H 0.43 2.07 8.96 -92.71 -0.83 1.24 16 10 C 0.55 14.17 7.60 86.33 0.66 14.82 16 11 O -0.59 -19.75 15.81 -4.42 -0.07 -19.82 16 12 C -0.25 -5.92 8.61 23.62 0.20 -5.72 16 13 C 0.01 0.41 9.45 23.82 0.23 0.64 16 14 C -0.17 -5.38 5.87 -20.13 -0.12 -5.49 16 15 C -0.04 -1.15 9.40 22.55 0.21 -0.93 16 16 C -0.21 -8.14 9.97 22.34 0.22 -7.91 16 17 C 0.13 6.19 6.66 22.72 0.15 6.34 16 18 O -0.22 -12.65 9.74 -20.39 -0.20 -12.85 16 19 C -0.42 -23.45 9.48 67.94 0.64 -22.81 16 20 H 0.11 5.38 5.18 -2.91 -0.02 5.36 16 21 C -0.02 -1.03 5.49 84.86 0.47 -0.57 16 22 N -0.91 -54.24 13.67 21.62 0.30 -53.95 16 23 Si 1.02 41.58 29.55 68.60 2.03 43.61 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 27 C -0.25 -10.51 9.14 22.34 0.20 -10.30 16 28 C -0.04 -1.41 9.78 22.55 0.22 -1.19 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.39 8.07 -2.39 -0.02 0.37 16 31 H 0.08 0.77 6.10 -2.39 -0.01 0.76 16 32 H 0.12 0.97 8.07 -2.38 -0.02 0.95 16 33 H 0.09 1.75 7.42 -2.39 -0.02 1.73 16 34 H 0.11 3.15 8.06 -2.91 -0.02 3.12 16 35 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 37 H 0.15 2.75 4.21 -2.92 -0.01 2.74 16 38 H 0.12 3.50 7.52 -2.91 -0.02 3.48 16 39 H 0.16 3.53 6.16 -2.91 -0.02 3.52 16 40 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 41 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 42 H 0.12 5.31 5.62 -2.91 -0.02 5.29 16 43 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -78.02 370.94 5.37 -72.65 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.23 Total: 27.31 kcal Atomic # 6 Polarization: -42.59 SS G_CDS: 6.64 Total: -35.95 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.26 Total: -74.95 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.27 Total: -32.66 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -78.02 5.37 -72.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080973940.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.566 kcal (2) G-P(sol) polarization free energy of solvation -78.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds