Wall clock time and date at job start Tue Mar 31 2020 14:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99331 * 2 1 4 4 C 1.53002 * 109.46512 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47150 * 65.00675 * 4 3 2 6 6 C 1.36034 * 117.00340 * 179.97438 * 5 4 3 7 7 C 1.38646 * 119.98973 * 0.25078 * 6 5 4 8 8 C 1.38137 * 120.03744 * 180.25597 * 7 6 5 9 9 C 1.38841 * 120.02080 * 359.48828 * 8 7 6 10 10 N 1.40143 * 120.00218 * 180.22949 * 9 8 7 11 11 C 1.34782 * 119.99710 * 144.90923 * 10 9 8 12 12 O 1.21591 * 119.99689 * 4.59398 * 11 10 9 13 13 N 1.34778 * 120.00082 * 184.58906 * 11 10 9 14 14 C 1.46500 * 119.99905 * 0.02562 * 13 11 10 15 15 C 1.46502 * 119.99858 * 180.02562 * 13 11 10 16 16 C 1.50699 * 109.46985 * 89.99912 * 15 13 11 17 17 H 1.08004 * 120.00112 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00146 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47184 * 60.00038 * 20 18 16 22 22 H 1.48494 * 109.47125 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46919 * 300.00063 * 20 18 16 24 24 C 1.38817 * 119.98868 * 0.25805 * 9 8 7 25 25 C 1.38275 * 119.96083 * 359.97438 * 24 9 8 26 26 F 1.35098 * 120.01446 * 180.02562 * 25 24 9 27 27 H 1.09004 * 109.47078 * 299.99232 * 1 2 3 28 28 H 1.08994 * 109.47416 * 59.99325 * 1 2 3 29 29 H 1.08998 * 109.46607 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47178 * 60.00931 * 3 2 1 31 31 H 1.08991 * 109.47423 * 300.00169 * 3 2 1 32 32 H 1.08998 * 109.47478 * 305.00214 * 4 3 2 33 33 H 1.08999 * 109.47197 * 184.99891 * 4 3 2 34 34 H 1.08002 * 119.98186 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.98819 * 179.76787 * 8 7 6 36 36 H 0.97002 * 120.00348 * 324.91566 * 10 9 8 37 37 H 1.08992 * 109.47217 * 89.99928 * 14 13 11 38 38 H 1.09000 * 109.46831 * 210.00503 * 14 13 11 39 39 H 1.09001 * 109.46865 * 329.99258 * 14 13 11 40 40 H 1.09004 * 109.46942 * 209.99957 * 15 13 11 41 41 H 1.08995 * 109.47241 * 329.99855 * 15 13 11 42 42 H 0.96995 * 119.99910 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.01494 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3032 0.3989 -1.3844 7 6 6.1818 0.7909 -0.3861 8 6 7.5414 0.6123 -0.5522 9 6 8.0287 0.0304 -1.7148 10 7 9.4078 -0.1550 -1.8808 11 6 9.8680 -1.2398 -2.5351 12 8 9.0866 -2.0138 -3.0535 13 7 11.1942 -1.4664 -2.6149 14 6 12.1355 -0.5340 -1.9899 15 6 11.6943 -2.6452 -3.3266 16 6 11.9217 -2.2983 -4.7754 17 1 11.7148 -1.2995 -5.1304 18 6 12.3949 -3.2558 -5.6474 19 7 12.6473 -4.4718 -5.2150 20 14 12.6774 -2.8256 -7.4432 21 1 13.6744 -1.7293 -7.5386 22 1 13.1842 -4.0205 -8.1646 23 1 11.3974 -2.3851 -8.0540 24 6 7.1496 -0.3673 -2.7128 25 6 5.7890 -0.1839 -2.5479 26 9 4.9324 -0.5710 -3.5182 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.8031 1.2395 0.5205 35 1 8.2254 0.9215 0.2244 36 1 10.0313 0.4973 -1.5248 37 1 12.3285 -0.8459 -0.9636 38 1 13.0702 -0.5309 -2.5507 39 1 11.7082 0.4688 -1.9907 40 1 12.6340 -2.9686 -2.8786 41 1 10.9624 -3.4498 -3.2562 42 1 12.9805 -5.1453 -5.8284 43 1 7.5282 -0.8197 -3.6174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085576387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:09 Heat of formation + Delta-G solvation = -111.823432 kcal Electronic energy + Delta-G solvation = -27126.582090 eV Core-core repulsion = 22895.015023 eV Total energy + Delta-G solvation = -4231.567067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.56261 -40.44992 -39.61124 -38.20706 -37.26462 -34.93311 -34.07158 -32.51746 -31.18397 -30.51631 -28.66389 -27.54877 -26.69892 -25.77911 -24.16518 -23.19118 -22.31258 -21.69498 -19.56364 -18.57185 -18.05162 -17.25597 -17.16356 -16.58318 -16.37336 -16.04646 -15.76459 -15.67354 -15.34997 -14.93583 -14.82334 -14.76272 -14.45125 -13.88799 -13.72216 -13.22125 -13.09390 -12.91844 -12.76334 -12.44666 -12.26619 -12.16726 -12.01324 -11.85611 -11.62595 -11.35302 -11.19308 -11.11999 -10.92267 -10.56765 -10.15957 -10.08506 -9.76161 -9.64086 -9.32830 -8.73863 -8.42889 -7.85568 -7.52013 -6.03939 -4.08965 1.17937 1.29798 2.90104 3.12158 3.32865 3.34845 3.37748 3.41258 3.50173 3.92846 4.25783 4.40695 4.46282 4.51809 4.69349 4.74773 4.83382 4.90248 4.99473 5.02979 5.03572 5.17445 5.28911 5.30357 5.34465 5.43256 5.59276 5.79396 5.82229 5.94296 6.07339 6.08152 6.25109 6.57338 6.73486 6.76093 6.97483 7.30273 7.32340 7.46981 7.62838 7.93165 8.22112 8.52475 8.91064 9.18502 9.56307 11.03900 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.929540 B =11697.975328 C =12496.411186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.060 3.940 5 O -0.302 6.302 6 C 0.070 3.930 7 C -0.164 4.164 8 C -0.126 4.126 9 C 0.174 3.826 10 N -0.694 5.694 11 C 0.696 3.304 12 O -0.566 6.566 13 N -0.611 5.611 14 C 0.084 3.916 15 C 0.259 3.741 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.119 4.119 25 C 0.093 3.907 26 F -0.130 7.130 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.133 0.867 36 H 0.404 0.596 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 16.102 15.310 27.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.216 6.216 6 C 0.024 3.976 7 C -0.183 4.183 8 C -0.147 4.147 9 C 0.078 3.922 10 N -0.345 5.345 11 C 0.398 3.602 12 O -0.442 6.442 13 N -0.346 5.346 14 C -0.061 4.061 15 C 0.140 3.860 16 C -0.567 4.567 17 H 0.075 0.925 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.141 4.141 25 C 0.072 3.928 26 F -0.109 7.109 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.241 0.759 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.460 15.030 14.672 26.685 hybrid contribution 0.347 0.800 -0.751 1.151 sum -16.112 15.830 13.921 26.533 Atomic orbital electron populations 1.22765 0.80814 1.03094 0.99880 1.88000 1.19830 1.26967 1.95384 1.22571 0.91593 0.85897 1.01354 1.22840 0.93736 0.98176 0.86755 1.86193 1.19115 1.77420 1.38836 1.18863 0.83370 1.00795 0.94619 1.20765 0.92899 1.05691 0.98983 1.20678 0.94966 1.03249 0.95847 1.17127 0.83185 0.99070 0.92843 1.42943 1.04728 1.25583 1.61217 1.15947 0.83634 0.80996 0.79622 1.90904 1.54836 1.47743 1.50745 1.47511 1.02483 1.28227 1.56375 1.21601 0.95146 0.91771 0.97551 1.19273 0.94812 0.81322 0.90587 1.21403 1.43996 0.97439 0.93906 0.92508 1.24930 0.95399 0.94801 0.98948 1.69917 1.44977 1.02739 1.35671 0.86550 0.78553 0.77678 0.84584 1.20298 1.21170 1.20143 1.21323 0.89783 1.01411 1.01562 1.16765 0.87214 1.02966 0.85833 1.91500 1.69412 1.89016 1.60963 0.94126 0.93891 0.89408 0.91113 0.92023 0.90974 0.90377 0.84542 0.84949 0.75914 0.93565 0.90209 0.93156 0.94694 0.93582 0.92619 0.81771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -4.01 10.67 -40.08 -0.43 -4.43 16 3 C 0.06 0.48 6.32 37.16 0.23 0.71 16 4 C 0.06 0.51 5.12 37.16 0.19 0.71 16 5 O -0.30 -4.03 9.97 -24.70 -0.25 -4.27 16 6 C 0.07 0.98 6.69 -39.19 -0.26 0.72 16 7 C -0.16 -1.81 9.03 -39.47 -0.36 -2.17 16 8 C -0.13 -1.46 9.96 -39.40 -0.39 -1.85 16 9 C 0.17 2.66 6.30 -83.62 -0.53 2.13 16 10 N -0.69 -10.84 5.22 -14.19 -0.07 -10.91 16 11 C 0.70 14.62 8.12 -86.91 -0.71 13.92 16 12 O -0.57 -14.40 13.36 5.29 0.07 -14.33 16 13 N -0.61 -12.75 2.86 -188.74 -0.54 -13.29 16 14 C 0.08 1.24 10.24 59.85 0.61 1.85 16 15 C 0.26 6.72 5.16 -5.19 -0.03 6.70 16 16 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.12 -2.10 8.67 -39.35 -0.34 -2.44 16 25 C 0.09 1.55 7.30 -39.32 -0.29 1.26 16 26 F -0.13 -2.35 17.11 2.25 0.04 -2.32 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.57 7.65 -51.93 -0.40 0.18 16 33 H 0.08 0.45 7.67 -51.93 -0.40 0.06 16 34 H 0.14 1.03 6.29 -52.49 -0.33 0.70 16 35 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.40 4.77 6.52 -40.82 -0.27 4.50 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 39 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 41 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.16 3.37 6.22 -52.49 -0.33 3.04 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -35.98 369.34 -6.84 -42.82 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.77 Total: 0.76 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.17 Total: 9.29 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.12 Total: -50.01 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.60 Total: -23.04 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.98 -6.84 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085576387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.003 kcal (2) G-P(sol) polarization free energy of solvation -35.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds