Wall clock time and date at job start Tue Mar 31 2020 14:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42903 * 113.99331 * 2 1 4 4 C 1.53002 * 109.46512 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47150 * 65.00675 * 4 3 2 6 6 C 1.36034 * 117.00340 * 179.97438 * 5 4 3 7 7 C 1.38646 * 119.98973 * 0.25078 * 6 5 4 8 8 C 1.38137 * 120.03744 * 180.25597 * 7 6 5 9 9 C 1.38841 * 120.02080 * 359.48828 * 8 7 6 10 10 N 1.40143 * 120.00218 * 180.22949 * 9 8 7 11 11 C 1.34782 * 119.99710 * 144.90923 * 10 9 8 12 12 O 1.21591 * 119.99689 * 4.59398 * 11 10 9 13 13 N 1.34778 * 120.00082 * 184.58906 * 11 10 9 14 14 C 1.46500 * 119.99905 * 0.02562 * 13 11 10 15 15 C 1.46502 * 119.99858 * 180.02562 * 13 11 10 16 16 C 1.50699 * 109.46985 * 89.99912 * 15 13 11 17 17 H 1.08004 * 120.00112 * 0.02562 * 16 15 13 18 18 C 1.37877 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00146 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99925 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47184 * 60.00038 * 20 18 16 22 22 H 1.48494 * 109.47125 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46919 * 300.00063 * 20 18 16 24 24 C 1.38817 * 119.98868 * 0.25805 * 9 8 7 25 25 C 1.38275 * 119.96083 * 359.97438 * 24 9 8 26 26 F 1.35098 * 120.01446 * 180.02562 * 25 24 9 27 27 H 1.09004 * 109.47078 * 299.99232 * 1 2 3 28 28 H 1.08994 * 109.47416 * 59.99325 * 1 2 3 29 29 H 1.08998 * 109.46607 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47178 * 60.00931 * 3 2 1 31 31 H 1.08991 * 109.47423 * 300.00169 * 3 2 1 32 32 H 1.08998 * 109.47478 * 305.00214 * 4 3 2 33 33 H 1.08999 * 109.47197 * 184.99891 * 4 3 2 34 34 H 1.08002 * 119.98186 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.98819 * 179.76787 * 8 7 6 36 36 H 0.97002 * 120.00348 * 324.91566 * 10 9 8 37 37 H 1.08992 * 109.47217 * 89.99928 * 14 13 11 38 38 H 1.09000 * 109.46831 * 210.00503 * 14 13 11 39 39 H 1.09001 * 109.46865 * 329.99258 * 14 13 11 40 40 H 1.09004 * 109.46942 * 209.99957 * 15 13 11 41 41 H 1.08995 * 109.47241 * 329.99855 * 15 13 11 42 42 H 0.96995 * 119.99910 * 180.02562 * 19 18 16 43 43 H 1.08001 * 120.01494 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 8 3.9648 0.5799 -1.2220 6 6 5.3032 0.3989 -1.3844 7 6 6.1818 0.7909 -0.3861 8 6 7.5414 0.6123 -0.5522 9 6 8.0287 0.0304 -1.7148 10 7 9.4078 -0.1550 -1.8808 11 6 9.8680 -1.2398 -2.5351 12 8 9.0866 -2.0138 -3.0535 13 7 11.1942 -1.4664 -2.6149 14 6 12.1355 -0.5340 -1.9899 15 6 11.6943 -2.6452 -3.3266 16 6 11.9217 -2.2983 -4.7754 17 1 11.7148 -1.2995 -5.1304 18 6 12.3949 -3.2558 -5.6474 19 7 12.6473 -4.4718 -5.2150 20 14 12.6774 -2.8256 -7.4432 21 1 13.6744 -1.7293 -7.5386 22 1 13.1842 -4.0205 -8.1646 23 1 11.3974 -2.3851 -8.0540 24 6 7.1496 -0.3673 -2.7128 25 6 5.7890 -0.1839 -2.5479 26 9 4.9324 -0.5710 -3.5182 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5683 0.8409 33 1 3.9785 2.1766 0.0889 34 1 5.8031 1.2395 0.5205 35 1 8.2254 0.9215 0.2244 36 1 10.0313 0.4973 -1.5248 37 1 12.3285 -0.8459 -0.9636 38 1 13.0702 -0.5309 -2.5507 39 1 11.7082 0.4688 -1.9907 40 1 12.6340 -2.9686 -2.8786 41 1 10.9624 -3.4498 -3.2562 42 1 12.9805 -5.1453 -5.8284 43 1 7.5282 -0.8197 -3.6174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085576387.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:09 Heat of formation + Delta-G solvation = -137.704897 kcal Electronic energy + Delta-G solvation = -27127.704394 eV Core-core repulsion = 22895.015023 eV Total energy + Delta-G solvation = -4232.689372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.86828 -41.74863 -40.76509 -39.05818 -38.26952 -36.63967 -35.51697 -34.53190 -31.97639 -31.54229 -30.14803 -29.05117 -27.36038 -27.21193 -25.34177 -24.72416 -23.38252 -22.84726 -21.03658 -19.67708 -19.27063 -18.67849 -18.57353 -17.85423 -17.55774 -17.15093 -16.91622 -16.62648 -16.53687 -16.44966 -16.09961 -15.80626 -15.72605 -15.40247 -14.90341 -14.67601 -14.42287 -14.04360 -13.84585 -13.58273 -13.52851 -13.46951 -13.18640 -13.07206 -12.83382 -12.73867 -12.53048 -12.43841 -12.21896 -12.16393 -11.89706 -11.74332 -11.10512 -10.85796 -10.65920 -10.63552 -9.92869 -9.50316 -8.74341 -8.21238 -6.36208 0.08587 0.17517 1.35974 1.40834 1.47432 1.66860 2.08253 2.12255 2.38247 2.62832 2.82960 2.99609 3.08063 3.27409 3.70333 3.91148 4.06873 4.12426 4.15930 4.30469 4.37179 4.38112 4.50785 4.52595 4.55946 4.62377 4.67632 4.77548 4.81687 4.86367 4.96620 4.98494 5.08547 5.15259 5.25252 5.35570 5.54665 5.77310 5.78711 6.06011 6.07353 6.19438 6.36338 6.72268 7.05215 7.30593 7.61889 8.84671 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.002393 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.929540 B =11697.975328 C =12496.411186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.057 3.943 4 C 0.047 3.953 5 O -0.327 6.327 6 C 0.079 3.921 7 C -0.146 4.146 8 C -0.094 4.094 9 C 0.150 3.850 10 N -0.669 5.669 11 C 0.690 3.310 12 O -0.623 6.623 13 N -0.618 5.618 14 C 0.077 3.923 15 C 0.275 3.725 16 C -0.543 4.543 17 H 0.052 0.948 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.282 1.282 24 C -0.144 4.144 25 C 0.054 3.946 26 F -0.152 7.152 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.425 0.575 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.032 0.968 41 H -0.002 1.002 42 H 0.267 0.733 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 19.508 18.189 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.019 4.019 4 C -0.027 4.027 5 O -0.242 6.242 6 C 0.032 3.968 7 C -0.165 4.165 8 C -0.115 4.115 9 C 0.054 3.946 10 N -0.322 5.322 11 C 0.392 3.608 12 O -0.503 6.503 13 N -0.353 5.353 14 C -0.065 4.065 15 C 0.153 3.847 16 C -0.582 4.582 17 H 0.070 0.930 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.182 1.182 22 H -0.203 1.203 23 H -0.208 1.208 24 C -0.165 4.165 25 C 0.034 3.966 26 F -0.131 7.131 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.204 0.796 35 H 0.199 0.801 36 H 0.266 0.734 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.050 0.950 41 H 0.016 0.984 42 H 0.076 0.924 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.428 18.523 17.611 30.383 hybrid contribution 0.197 -0.197 -1.515 1.540 sum -16.231 18.326 16.096 29.298 Atomic orbital electron populations 1.22903 0.79446 1.03566 1.01078 1.87943 1.21590 1.28921 1.95674 1.22809 0.91052 0.85137 1.02936 1.23332 0.94511 0.99842 0.84992 1.86188 1.18621 1.77813 1.41552 1.18962 0.84491 0.99480 0.93885 1.21312 0.92074 1.03744 0.99362 1.21141 0.95953 0.99773 0.94601 1.17367 0.82359 1.00891 0.93990 1.42488 1.05464 1.24180 1.60028 1.16164 0.83197 0.81772 0.79659 1.90879 1.56312 1.50098 1.53052 1.47357 1.03567 1.27984 1.56385 1.21935 0.93812 0.92403 0.98343 1.18708 0.93109 0.82314 0.90537 1.21688 1.43858 0.97322 0.95292 0.92965 1.25835 0.95093 0.94672 1.03563 1.70034 1.45658 1.03675 1.37280 0.85500 0.78426 0.78154 0.78911 1.18239 1.20303 1.20795 1.21049 0.91028 1.03150 1.01310 1.17047 0.86838 1.05553 0.87210 1.91424 1.69914 1.89627 1.62123 0.91940 0.93610 0.89469 0.87505 0.92304 0.89931 0.86782 0.79586 0.80121 0.73352 0.90628 0.90870 0.89257 0.94981 0.98383 0.92394 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.27 10.67 -144.34 -1.54 -9.81 16 3 C 0.06 0.71 6.32 71.98 0.45 1.17 16 4 C 0.05 0.64 5.12 71.98 0.37 1.00 16 5 O -0.33 -8.26 9.97 -89.29 -0.89 -9.15 16 6 C 0.08 2.09 6.69 22.53 0.15 2.24 16 7 C -0.15 -2.56 9.03 22.34 0.20 -2.36 16 8 C -0.09 -1.76 9.96 22.39 0.22 -1.54 16 9 C 0.15 4.42 6.30 38.09 0.24 4.66 16 10 N -0.67 -20.08 5.22 -317.07 -1.66 -21.73 16 11 C 0.69 29.80 8.12 179.05 1.45 31.25 16 12 O -0.62 -34.04 13.36 -4.00 -0.05 -34.10 16 13 N -0.62 -26.15 2.86 -869.31 -2.48 -28.63 16 14 C 0.08 2.12 10.24 127.77 1.31 3.43 16 15 C 0.27 14.92 5.16 85.63 0.44 15.37 16 16 C -0.54 -31.63 9.39 25.60 0.24 -31.39 16 17 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 20 Si 0.97 45.77 29.54 68.60 2.03 47.80 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 24 C -0.14 -5.38 8.67 22.42 0.19 -5.19 16 25 C 0.05 1.89 7.30 22.44 0.16 2.05 16 26 F -0.15 -6.01 17.11 44.97 0.77 -5.24 16 27 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 0.95 7.65 -2.39 -0.02 0.93 16 33 H 0.11 0.70 7.67 -2.39 -0.02 0.68 16 34 H 0.19 1.46 6.29 -2.91 -0.02 1.44 16 35 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 36 H 0.43 8.58 6.52 -92.71 -0.60 7.98 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 39 H 0.09 1.73 6.30 -2.39 -0.02 1.72 16 40 H 0.03 1.73 8.07 -2.38 -0.02 1.71 16 41 H 0.00 -0.13 7.42 -2.39 -0.02 -0.14 16 42 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.12 5.50 6.22 -2.91 -0.02 5.48 16 Total: -1.00 -87.58 369.34 4.05 -83.53 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.44 Total: 10.54 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 7.15 Total: 23.17 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -3.85 Total: -106.75 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -2.48 Total: -53.05 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.77 Total: -5.24 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -87.58 4.05 -83.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085576387.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.173 kcal (2) G-P(sol) polarization free energy of solvation -87.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds