Wall clock time and date at job start Tue Mar 31 2020 14:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99810 * 2 1 4 4 C 1.50699 * 109.47372 * 270.00008 * 3 2 1 5 5 C 1.38222 * 119.61918 * 95.02378 * 4 3 2 6 6 C 1.38628 * 119.15926 * 179.74974 * 5 4 3 7 7 C 1.38675 * 118.42354 * 0.47016 * 6 5 4 8 8 C 1.38181 * 119.15778 * 359.50796 * 7 6 5 9 9 N 1.31854 * 119.61485 * 275.00157 * 4 3 2 10 10 C 1.34773 * 119.99711 * 180.02562 * 2 1 3 11 11 O 1.21280 * 119.99655 * 180.02562 * 10 2 1 12 12 C 1.50700 * 120.00205 * 359.97438 * 10 2 1 13 13 C 1.50699 * 109.47008 * 180.02562 * 12 10 2 14 14 C 1.38326 * 119.97105 * 269.72990 * 13 12 10 15 15 C 1.38279 * 120.13963 * 179.76797 * 14 13 12 16 16 C 1.38123 * 120.06690 * 0.50522 * 15 14 13 17 17 C 1.38850 * 119.93319 * 359.74791 * 16 15 14 18 18 O 1.35755 * 120.07201 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99379 * 354.49224 * 18 17 16 20 20 H 1.08002 * 120.00417 * 5.05130 * 19 18 17 21 21 C 1.38663 * 119.99705 * 185.05520 * 19 18 17 22 22 N 1.31549 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46957 * 60.00204 * 23 21 19 25 25 H 1.48500 * 109.47038 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47467 * 299.99978 * 23 21 19 27 27 C 1.38078 * 119.96299 * 90.00400 * 13 12 10 28 28 H 1.09006 * 109.47168 * 89.99757 * 1 2 3 29 29 H 1.08996 * 109.47290 * 209.99695 * 1 2 3 30 30 H 1.09001 * 109.47547 * 329.99997 * 1 2 3 31 31 H 1.09000 * 109.46943 * 149.99635 * 3 2 1 32 32 H 1.08996 * 109.46934 * 30.00343 * 3 2 1 33 33 H 1.08000 * 120.41880 * 359.95268 * 5 4 3 34 34 H 1.08008 * 120.78704 * 180.23373 * 6 5 4 35 35 H 1.08002 * 120.41973 * 179.78357 * 7 6 5 36 36 H 1.08002 * 119.61340 * 180.25060 * 8 7 6 37 37 H 1.08999 * 109.47145 * 300.00559 * 12 10 2 38 38 H 1.08997 * 109.46688 * 60.00723 * 12 10 2 39 39 H 1.07999 * 119.92580 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.96593 * 180.25612 * 15 14 13 41 41 H 1.08006 * 120.02936 * 179.76644 * 16 15 14 42 42 H 0.97003 * 120.00548 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.03849 * 359.95360 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.5754 2.5854 -2.0298 6 6 1.8185 2.9834 -3.3353 7 6 2.9303 2.4698 -3.9857 8 6 3.7588 1.5926 -3.3123 9 7 3.4991 1.2394 -2.0684 10 6 2.1388 -1.1672 -0.0005 11 8 3.3516 -1.1672 -0.0001 12 6 1.3853 -2.4723 -0.0005 13 6 2.3646 -3.6177 -0.0005 14 6 2.8093 -4.1466 -1.1988 15 6 3.7116 -5.1945 -1.2029 16 6 4.1635 -5.7232 -0.0096 17 6 3.7150 -5.1980 1.1950 18 8 4.1569 -5.7158 2.3695 19 6 4.9403 -6.8110 2.2992 20 1 5.2562 -7.1883 1.3378 21 6 5.3403 -7.4529 3.4614 22 7 4.9559 -6.9931 4.6324 23 14 6.4250 -8.9706 3.3641 24 1 7.7011 -8.6244 2.6881 25 1 6.7099 -9.4641 4.7355 26 1 5.7269 -10.0294 2.5916 27 6 2.8127 -4.1419 1.1957 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1384 0.5139 32 1 1.6084 2.0283 0.5139 33 1 0.7165 2.9620 -1.4942 34 1 1.1555 3.6741 -3.8352 35 1 3.1484 2.7553 -5.0043 36 1 4.6290 1.1913 -3.8105 37 1 0.7589 -2.5302 0.8896 38 1 0.7584 -2.5298 -0.8903 39 1 2.4537 -3.7380 -2.1331 40 1 4.0601 -5.6026 -2.1401 41 1 4.8653 -6.5442 -0.0135 42 1 5.2353 -7.4423 5.4455 43 1 2.4623 -3.7311 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089759626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:04 Heat of formation + Delta-G solvation = 9.167255 kcal Electronic energy + Delta-G solvation = -26305.420994 eV Core-core repulsion = 22509.869702 eV Total energy + Delta-G solvation = -3795.551292 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.58385 -39.62730 -38.68604 -36.48026 -35.53783 -32.86443 -32.46969 -32.17370 -31.56145 -29.14137 -28.13574 -27.10179 -25.72063 -25.05878 -23.69054 -22.47468 -21.54794 -20.85609 -19.19603 -17.53048 -17.20990 -16.97355 -16.85715 -16.34338 -16.08675 -15.93571 -15.21164 -14.91572 -14.41612 -14.33891 -14.03138 -13.61856 -13.52527 -13.41863 -13.21587 -13.13863 -13.03792 -12.67270 -12.46286 -12.35961 -12.03811 -11.91733 -11.71948 -11.42303 -11.17423 -10.73955 -10.68059 -10.52341 -10.38852 -10.12558 -9.67114 -9.58915 -9.25105 -9.21557 -8.74585 -8.72743 -7.95091 -7.11025 -6.35414 -3.94198 0.81062 1.05956 2.20165 2.50394 2.87381 3.01756 3.19171 3.20769 3.22822 3.71096 4.04545 4.08441 4.41991 4.57063 4.60759 4.73808 4.84655 4.88699 4.95323 5.05942 5.14448 5.19417 5.25077 5.27069 5.37578 5.45334 5.46878 5.59530 5.63309 5.76506 5.84447 5.87159 5.90634 6.03952 6.27902 6.39888 6.44370 6.45634 6.76342 7.02554 7.16906 7.35977 7.37851 7.47579 7.54238 7.88430 7.93754 8.09888 8.41052 9.10366 9.82319 10.83000 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002430 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.303498 B =11521.931591 C =11873.829681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.165 3.835 4 C 0.112 3.888 5 C -0.164 4.164 6 C -0.080 4.080 7 C -0.176 4.176 8 C 0.100 3.900 9 N -0.453 5.453 10 C 0.513 3.487 11 O -0.494 6.494 12 C -0.091 4.091 13 C -0.032 4.032 14 C -0.194 4.194 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.090 0.910 21 C 0.038 3.962 22 N -0.866 5.866 23 Si 0.940 3.060 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.270 1.270 27 C -0.174 4.174 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.155 0.845 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.269 0.731 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 19.078 -14.283 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.359 5.359 3 C 0.041 3.959 4 C -0.028 4.028 5 C -0.185 4.185 6 C -0.106 4.106 7 C -0.196 4.196 8 C -0.057 4.057 9 N -0.162 5.162 10 C 0.300 3.700 11 O -0.365 6.365 12 C -0.130 4.130 13 C -0.033 4.033 14 C -0.213 4.213 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.102 3.898 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.501 5.501 23 Si 0.765 3.235 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.196 1.196 27 C -0.193 4.193 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.172 0.828 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.143 0.857 42 H 0.079 0.921 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.332 18.466 -13.333 25.010 hybrid contribution -0.113 -0.049 -0.782 0.792 sum -10.444 18.417 -14.115 25.446 Atomic orbital electron populations 1.21816 0.79588 1.03442 1.01626 1.47876 1.06640 1.05317 1.76113 1.20232 0.99434 0.85536 0.90676 1.21761 0.90588 0.93025 0.97428 1.21969 1.00699 0.99748 0.96065 1.21552 0.96659 0.97944 0.94450 1.22189 0.96452 0.99499 1.01465 1.22887 0.98548 0.93795 0.90473 1.67673 1.18044 1.21691 1.08795 1.20777 0.88446 0.84711 0.76048 1.90793 1.13523 1.86550 1.45665 1.20617 0.97772 0.90543 1.04100 1.18672 0.96978 0.94529 0.93105 1.20325 1.03937 1.01058 0.95993 1.20662 0.96155 0.95707 0.96772 1.21160 1.06544 1.05171 0.92129 1.19267 0.91601 0.92399 0.86557 1.83977 1.58919 1.40787 1.24725 1.21265 1.27368 1.03393 0.94615 0.89223 1.25262 0.98084 0.98993 0.94211 1.70030 1.43112 1.39571 0.97402 0.85799 0.79717 0.80218 0.77784 1.19555 1.20350 1.19567 1.19930 1.02280 0.99957 0.97135 0.93013 0.90449 0.91115 0.87984 0.89070 0.84993 0.84982 0.84922 0.82779 0.88366 0.88764 0.88161 0.87566 0.85665 0.92106 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.28 59.85 0.62 1.17 16 2 N -0.62 -7.19 2.86 -182.96 -0.52 -7.72 16 3 C 0.16 1.79 5.76 -5.20 -0.03 1.76 16 4 C 0.11 1.27 6.36 -82.59 -0.53 0.75 16 5 C -0.16 -1.36 9.72 -39.44 -0.38 -1.74 16 6 C -0.08 -0.59 10.18 -39.28 -0.40 -0.99 16 7 C -0.18 -1.44 10.11 -39.44 -0.40 -1.84 16 8 C 0.10 1.10 11.18 -17.55 -0.20 0.90 16 9 N -0.45 -6.32 10.27 -9.47 -0.10 -6.42 16 10 C 0.51 8.09 7.67 -10.99 -0.08 8.01 16 11 O -0.49 -10.26 15.61 5.56 0.09 -10.17 16 12 C -0.09 -1.30 4.38 -29.04 -0.13 -1.43 16 13 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 14 C -0.19 -3.74 9.70 -39.53 -0.38 -4.12 16 15 C -0.07 -1.51 10.04 -39.61 -0.40 -1.91 16 16 C -0.23 -5.41 9.17 -39.40 -0.36 -5.77 16 17 C 0.15 4.01 6.65 -39.11 -0.26 3.75 16 18 O -0.18 -5.40 9.76 0.04 0.00 -5.40 16 19 C -0.39 -11.37 9.49 30.89 0.29 -11.07 16 20 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 21 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 22 N -0.87 -26.19 13.67 55.48 0.76 -25.43 16 23 Si 0.94 21.25 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 27 C -0.17 -3.96 9.65 -39.39 -0.38 -4.34 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.49 6.44 -51.93 -0.33 0.16 16 30 H 0.07 0.33 7.89 -51.93 -0.41 -0.08 16 31 H 0.10 1.39 7.42 -51.93 -0.39 1.00 16 32 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 36 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.10 1.19 7.34 -51.93 -0.38 0.81 16 38 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 39 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -37.75 371.88 -8.19 -45.93 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.42 Total: 4.34 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.57 Total: -16.97 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.14 Total: -39.56 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.09 Total: -15.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.75 -8.19 -45.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089759626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.101 kcal (2) G-P(sol) polarization free energy of solvation -37.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds