Wall clock time and date at job start Tue Mar 31 2020 14:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 119.99810 * 2 1 4 4 C 1.50699 * 109.47372 * 270.00008 * 3 2 1 5 5 C 1.38222 * 119.61918 * 95.02378 * 4 3 2 6 6 C 1.38628 * 119.15926 * 179.74974 * 5 4 3 7 7 C 1.38675 * 118.42354 * 0.47016 * 6 5 4 8 8 C 1.38181 * 119.15778 * 359.50796 * 7 6 5 9 9 N 1.31854 * 119.61485 * 275.00157 * 4 3 2 10 10 C 1.34773 * 119.99711 * 180.02562 * 2 1 3 11 11 O 1.21280 * 119.99655 * 180.02562 * 10 2 1 12 12 C 1.50700 * 120.00205 * 359.97438 * 10 2 1 13 13 C 1.50699 * 109.47008 * 180.02562 * 12 10 2 14 14 C 1.38326 * 119.97105 * 269.72990 * 13 12 10 15 15 C 1.38279 * 120.13963 * 179.76797 * 14 13 12 16 16 C 1.38123 * 120.06690 * 0.50522 * 15 14 13 17 17 C 1.38850 * 119.93319 * 359.74791 * 16 15 14 18 18 O 1.35755 * 120.07201 * 179.97438 * 17 16 15 19 19 C 1.34829 * 116.99379 * 354.49224 * 18 17 16 20 20 H 1.08002 * 120.00417 * 5.05130 * 19 18 17 21 21 C 1.38663 * 119.99705 * 185.05520 * 19 18 17 22 22 N 1.31549 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99946 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46957 * 60.00204 * 23 21 19 25 25 H 1.48500 * 109.47038 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47467 * 299.99978 * 23 21 19 27 27 C 1.38078 * 119.96299 * 90.00400 * 13 12 10 28 28 H 1.09006 * 109.47168 * 89.99757 * 1 2 3 29 29 H 1.08996 * 109.47290 * 209.99695 * 1 2 3 30 30 H 1.09001 * 109.47547 * 329.99997 * 1 2 3 31 31 H 1.09000 * 109.46943 * 149.99635 * 3 2 1 32 32 H 1.08996 * 109.46934 * 30.00343 * 3 2 1 33 33 H 1.08000 * 120.41880 * 359.95268 * 5 4 3 34 34 H 1.08008 * 120.78704 * 180.23373 * 6 5 4 35 35 H 1.08002 * 120.41973 * 179.78357 * 7 6 5 36 36 H 1.08002 * 119.61340 * 180.25060 * 8 7 6 37 37 H 1.08999 * 109.47145 * 300.00559 * 12 10 2 38 38 H 1.08997 * 109.46688 * 60.00723 * 12 10 2 39 39 H 1.07999 * 119.92580 * 359.97438 * 14 13 12 40 40 H 1.07998 * 119.96593 * 180.25612 * 15 14 13 41 41 H 1.08006 * 120.02936 * 179.76644 * 16 15 14 42 42 H 0.97003 * 120.00548 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.03849 * 359.95360 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 6 1.5754 2.5854 -2.0298 6 6 1.8185 2.9834 -3.3353 7 6 2.9303 2.4698 -3.9857 8 6 3.7588 1.5926 -3.3123 9 7 3.4991 1.2394 -2.0684 10 6 2.1388 -1.1672 -0.0005 11 8 3.3516 -1.1672 -0.0001 12 6 1.3853 -2.4723 -0.0005 13 6 2.3646 -3.6177 -0.0005 14 6 2.8093 -4.1466 -1.1988 15 6 3.7116 -5.1945 -1.2029 16 6 4.1635 -5.7232 -0.0096 17 6 3.7150 -5.1980 1.1950 18 8 4.1569 -5.7158 2.3695 19 6 4.9403 -6.8110 2.2992 20 1 5.2562 -7.1883 1.3378 21 6 5.3403 -7.4529 3.4614 22 7 4.9559 -6.9931 4.6324 23 14 6.4250 -8.9706 3.3641 24 1 7.7011 -8.6244 2.6881 25 1 6.7099 -9.4641 4.7355 26 1 5.7269 -10.0294 2.5916 27 6 2.8127 -4.1419 1.1957 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1498 1.1384 0.5139 32 1 1.6084 2.0283 0.5139 33 1 0.7165 2.9620 -1.4942 34 1 1.1555 3.6741 -3.8352 35 1 3.1484 2.7553 -5.0043 36 1 4.6290 1.1913 -3.8105 37 1 0.7589 -2.5302 0.8896 38 1 0.7584 -2.5298 -0.8903 39 1 2.4537 -3.7380 -2.1331 40 1 4.0601 -5.6026 -2.1401 41 1 4.8653 -6.5442 -0.0135 42 1 5.2353 -7.4423 5.4455 43 1 2.4623 -3.7311 2.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089759626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:04 Heat of formation + Delta-G solvation = -16.297689 kcal Electronic energy + Delta-G solvation = -26306.525237 eV Core-core repulsion = 22509.869702 eV Total energy + Delta-G solvation = -3796.655535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45394 -40.89597 -40.25926 -38.24071 -36.61492 -34.35724 -33.78814 -33.30949 -32.63932 -30.90030 -29.19646 -28.13462 -27.32569 -26.49461 -24.35940 -23.45329 -23.19283 -22.43880 -20.37980 -19.40691 -18.73216 -18.08685 -17.78123 -17.25244 -17.01388 -16.73954 -16.71089 -16.40211 -16.10813 -15.76258 -15.50324 -15.15665 -14.74351 -14.47686 -14.29534 -14.16607 -14.02027 -13.95642 -13.66100 -13.57728 -13.26560 -12.94731 -12.91321 -12.73765 -12.56252 -12.45497 -12.34526 -12.22801 -12.12984 -11.21154 -10.91009 -10.79856 -10.75227 -10.35142 -9.97663 -9.64316 -9.60682 -8.98703 -8.46859 -6.15583 0.13086 0.42098 0.52592 0.74712 1.33475 1.45103 1.50395 1.72776 2.10290 2.18077 2.82460 2.98513 3.16710 3.38952 3.43374 3.71452 3.83028 3.95423 4.05401 4.08733 4.22032 4.27424 4.29682 4.34499 4.42290 4.47347 4.56556 4.57827 4.59452 4.71819 4.78148 4.81399 4.89023 4.99131 5.07454 5.12284 5.22536 5.28514 5.29699 5.57935 5.63817 5.71505 5.74408 5.82806 6.02502 6.20738 6.41238 6.97263 7.18087 7.30078 7.78673 8.76567 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002430 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.303498 B =11521.931591 C =11873.829681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.613 5.613 3 C 0.163 3.837 4 C 0.086 3.914 5 C -0.153 4.153 6 C -0.078 4.078 7 C -0.169 4.169 8 C 0.071 3.929 9 N -0.509 5.509 10 C 0.507 3.493 11 O -0.561 6.561 12 C -0.087 4.087 13 C -0.024 4.024 14 C -0.182 4.182 15 C -0.073 4.073 16 C -0.247 4.247 17 C 0.114 3.886 18 O -0.233 6.233 19 C -0.416 4.416 20 H 0.100 0.900 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.260 1.260 25 H -0.269 1.269 26 H -0.255 1.255 27 C -0.191 4.191 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.119 0.881 42 H 0.273 0.727 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 20.847 -17.429 30.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.347 5.347 3 C 0.039 3.961 4 C -0.053 4.053 5 C -0.173 4.173 6 C -0.104 4.104 7 C -0.188 4.188 8 C -0.086 4.086 9 N -0.219 5.219 10 C 0.295 3.705 11 O -0.438 6.438 12 C -0.126 4.126 13 C -0.025 4.025 14 C -0.200 4.200 15 C -0.091 4.091 16 C -0.266 4.266 17 C 0.064 3.936 18 O -0.140 6.140 19 C -0.492 4.492 20 H 0.117 0.883 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.184 1.184 25 H -0.194 1.194 26 H -0.179 1.179 27 C -0.210 4.210 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.200 20.293 -16.531 29.314 hybrid contribution 0.565 -0.305 -0.049 0.643 sum -12.635 19.988 -16.580 28.880 Atomic orbital electron populations 1.22186 0.76315 1.05551 1.03254 1.47905 1.08572 1.04301 1.73908 1.20365 0.98415 0.86121 0.91173 1.21853 0.91275 0.94677 0.97464 1.22285 1.00599 0.97973 0.96465 1.22041 0.96505 0.97682 0.94171 1.22491 0.95904 0.97942 1.02495 1.23073 0.99776 0.95450 0.90284 1.67553 1.20060 1.23847 1.10447 1.20984 0.87760 0.86223 0.75488 1.90779 1.16224 1.87584 1.49209 1.20713 0.96826 0.87895 1.07187 1.19193 0.96564 0.94966 0.91763 1.20891 1.02112 0.99599 0.97432 1.21100 0.95568 0.95509 0.96928 1.21281 1.07039 1.05572 0.92697 1.19856 0.93296 0.93890 0.86606 1.83937 1.60908 1.42136 1.27025 1.21792 1.27948 1.03873 0.95574 0.88312 1.26626 0.99524 1.02579 0.93389 1.70182 1.45560 1.41900 0.98379 0.84635 0.77574 0.75488 0.78397 1.18422 1.19365 1.17911 1.20189 1.02468 0.99737 0.98633 0.91456 0.89554 0.88031 0.92122 0.84822 0.81502 0.81289 0.82182 0.82851 0.85932 0.84885 0.84373 0.83818 0.86316 0.91812 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.28 127.77 1.31 1.98 16 2 N -0.61 -12.89 2.86 -851.15 -2.43 -15.32 16 3 C 0.16 3.37 5.76 85.63 0.49 3.87 16 4 C 0.09 1.85 6.36 42.55 0.27 2.12 16 5 C -0.15 -1.96 9.72 22.36 0.22 -1.74 16 6 C -0.08 -0.84 10.18 22.47 0.23 -0.61 16 7 C -0.17 -2.33 10.11 22.36 0.23 -2.10 16 8 C 0.07 1.54 11.18 84.67 0.95 2.49 16 9 N -0.51 -14.41 10.27 -183.89 -1.89 -16.30 16 10 C 0.51 15.61 7.67 87.66 0.67 16.28 16 11 O -0.56 -24.16 15.61 -3.03 -0.05 -24.21 16 12 C -0.09 -2.30 4.38 29.10 0.13 -2.17 16 13 C -0.02 -0.92 4.37 -19.88 -0.09 -1.01 16 14 C -0.18 -6.61 9.70 22.30 0.22 -6.39 16 15 C -0.07 -2.87 10.04 22.25 0.22 -2.65 16 16 C -0.25 -11.95 9.17 22.39 0.21 -11.75 16 17 C 0.11 6.23 6.65 22.58 0.15 6.38 16 18 O -0.23 -15.06 9.76 -22.78 -0.22 -15.28 16 19 C -0.42 -25.71 9.49 67.92 0.64 -25.07 16 20 H 0.10 5.64 5.20 -2.91 -0.02 5.62 16 21 C -0.02 -1.43 5.49 84.84 0.47 -0.97 16 22 N -0.92 -58.93 13.67 21.61 0.30 -58.63 16 23 Si 1.02 44.89 29.55 68.60 2.03 46.92 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 27 C -0.19 -9.08 9.65 22.39 0.22 -8.86 16 28 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.09 0.72 6.44 -2.39 -0.02 0.70 16 30 H 0.10 0.41 7.89 -2.39 -0.02 0.39 16 31 H 0.06 1.76 7.42 -2.39 -0.02 1.74 16 32 H 0.13 1.48 7.79 -2.39 -0.02 1.46 16 33 H 0.17 0.86 8.06 -2.91 -0.02 0.84 16 34 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 35 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.12 2.66 7.34 -2.39 -0.02 2.64 16 38 H 0.13 2.50 8.05 -2.39 -0.02 2.48 16 39 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 41 H 0.12 5.76 5.64 -2.91 -0.02 5.75 16 42 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 43 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 Total: -1.00 -93.28 371.88 5.29 -87.99 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.03 Total: 25.03 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 6.53 Total: -30.20 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -4.03 Total: -90.25 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -0.27 Total: -39.49 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -93.28 5.29 -87.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089759626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.689 kcal (2) G-P(sol) polarization free energy of solvation -93.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds