Wall clock time and date at job start Tue Mar 31 2020 14:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.52999 * 109.46882 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47530 * 65.00135 * 4 3 2 6 6 C 1.46502 * 120.00168 * 270.00107 * 5 4 3 7 7 C 1.50696 * 109.47183 * 269.99721 * 6 5 4 8 8 H 1.07999 * 119.99846 * 0.02562 * 7 6 5 9 9 C 1.37868 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00007 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00255 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.46851 * 89.99893 * 11 9 7 13 13 H 1.48499 * 109.46809 * 210.00280 * 11 9 7 14 14 H 1.48501 * 109.46888 * 329.99957 * 11 9 7 15 15 C 1.34783 * 119.99910 * 89.99762 * 5 4 3 16 16 O 1.21590 * 119.99822 * 180.02562 * 15 5 4 17 17 N 1.34773 * 120.00070 * 0.02562 * 15 5 4 18 18 C 1.40162 * 120.00249 * 184.43762 * 17 15 5 19 19 C 1.38708 * 120.07201 * 325.34750 * 18 17 15 20 20 C 1.38388 * 119.96164 * 179.97438 * 19 18 17 21 21 F 1.35095 * 119.94364 * 179.97438 * 20 19 18 22 22 C 1.38468 * 120.10862 * 0.02562 * 20 19 18 23 23 C 1.38255 * 120.15207 * 359.97438 * 22 20 19 24 24 C 1.38527 * 120.03706 * 0.02562 * 23 22 20 25 25 O 1.36024 * 120.05245 * 180.27564 * 24 23 22 26 26 C 1.42901 * 117.00487 * 359.72083 * 25 24 23 27 27 H 1.08992 * 109.47241 * 59.99876 * 1 2 3 28 28 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47277 * 299.99643 * 1 2 3 30 30 H 1.08996 * 109.46907 * 60.00300 * 3 2 1 31 31 H 1.08997 * 109.47639 * 300.00102 * 3 2 1 32 32 H 1.09003 * 109.47124 * 305.00168 * 4 3 2 33 33 H 1.09005 * 109.47312 * 185.00355 * 4 3 2 34 34 H 1.08997 * 109.46690 * 29.99792 * 6 5 4 35 35 H 1.08996 * 109.46883 * 149.99697 * 6 5 4 36 36 H 0.97001 * 119.99750 * 179.97438 * 10 9 7 37 37 H 0.97010 * 120.00009 * 4.43886 * 17 15 5 38 38 H 1.08001 * 120.01763 * 359.95482 * 19 18 17 39 39 H 1.08001 * 119.92229 * 180.02562 * 22 20 19 40 40 H 1.07999 * 119.98127 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.47401 * 59.99584 * 26 25 24 42 42 H 1.08994 * 109.47281 * 180.02562 * 26 25 24 43 43 H 1.09010 * 109.46961 * 300.00327 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2195 -0.5459 -0.6537 9 6 5.8603 -2.6287 -0.9518 10 7 7.0786 -2.9828 -0.6051 11 14 4.6173 -3.9292 -1.4549 12 1 4.7027 -4.1550 -2.9201 13 1 4.9113 -5.1975 -0.7406 14 1 3.2497 -3.4689 -1.1038 15 6 4.2615 1.3339 -2.3218 16 8 4.6265 0.8191 -3.3611 17 7 4.1427 2.6738 -2.2388 18 6 4.3496 3.4675 -3.3754 19 6 5.2996 3.0995 -4.3166 20 6 5.5015 3.8845 -5.4383 21 9 6.4273 3.5260 -6.3545 22 6 4.7570 5.0374 -5.6224 23 6 3.8089 5.4086 -4.6872 24 6 3.6017 4.6273 -3.5621 25 8 2.6650 4.9892 -2.6446 26 6 1.9352 6.1907 -2.9015 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 3.3853 -1.3628 -0.6735 35 1 3.9121 -1.2112 -2.3669 36 1 7.3312 -3.9193 -0.6095 37 1 3.9141 3.0890 -1.3923 38 1 5.8816 2.2009 -4.1740 39 1 4.9168 5.6476 -6.4991 40 1 3.2300 6.3085 -4.8333 41 1 1.3988 6.0952 -3.8456 42 1 1.2232 6.3629 -2.0944 43 1 2.6275 7.0307 -2.9604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092103459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:31 Heat of formation + Delta-G solvation = -106.684729 kcal Electronic energy + Delta-G solvation = -28549.435253 eV Core-core repulsion = 24318.091017 eV Total energy + Delta-G solvation = -4231.344236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.68010 -40.72896 -39.44896 -37.79463 -37.13710 -35.09795 -34.45154 -32.49421 -30.18938 -29.89927 -29.54339 -27.59150 -27.13714 -26.07514 -23.54901 -22.76421 -22.34067 -21.77787 -19.47233 -18.62469 -17.85819 -17.39319 -16.91840 -16.64400 -16.27850 -15.99895 -15.79377 -15.59707 -15.31512 -15.01250 -14.74921 -14.68746 -14.34415 -13.96519 -13.79088 -13.51262 -13.04602 -12.93498 -12.64781 -12.48172 -12.15346 -12.14652 -12.03011 -11.78093 -11.51399 -11.28805 -11.07196 -10.98316 -10.85916 -10.37789 -10.24248 -10.02593 -9.58983 -9.48931 -9.31421 -8.57313 -8.49165 -7.91788 -7.58191 -6.00273 -3.98062 1.15347 1.20432 2.94314 3.08075 3.38379 3.43909 3.44952 3.47979 3.81006 3.95914 4.19375 4.41164 4.49247 4.65642 4.74234 4.89233 4.92698 5.17452 5.17688 5.24135 5.27232 5.33467 5.34526 5.39691 5.45037 5.46744 5.52651 5.73200 5.74053 5.92814 6.03176 6.13532 6.23479 6.59897 6.64866 6.82152 7.06619 7.24900 7.29073 7.31819 7.50627 7.72184 8.44672 8.55478 9.01688 9.12259 9.60789 11.13151 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004434 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.303363 B = 6312.703494 C = 8243.354685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.374 6.374 3 C 0.042 3.958 4 C 0.112 3.888 5 N -0.591 5.591 6 C 0.234 3.766 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.900 5.900 11 Si 0.873 3.127 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.700 3.300 16 O -0.566 6.566 17 N -0.687 5.687 18 C 0.184 3.816 19 C -0.123 4.123 20 C 0.086 3.914 21 F -0.138 7.138 22 C -0.142 4.142 23 C -0.163 4.163 24 C 0.080 3.920 25 O -0.316 6.316 26 C 0.029 3.971 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.406 0.594 38 H 0.167 0.833 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.373 20.181 -1.840 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.036 4.036 4 C -0.013 4.013 5 N -0.325 5.325 6 C 0.114 3.886 7 C -0.566 4.566 8 H 0.091 0.909 9 C -0.129 4.129 10 N -0.539 5.539 11 Si 0.700 3.300 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.402 3.598 16 O -0.442 6.442 17 N -0.337 5.337 18 C 0.087 3.913 19 C -0.144 4.144 20 C 0.065 3.935 21 F -0.117 7.117 22 C -0.162 4.162 23 C -0.183 4.183 24 C 0.033 3.967 25 O -0.229 6.229 26 C -0.066 4.066 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.244 0.756 38 H 0.184 0.816 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.927 19.224 -2.344 23.284 hybrid contribution -0.771 -0.083 -0.097 0.781 sum -13.698 19.141 -2.441 23.664 Atomic orbital electron populations 1.22702 0.81885 1.02561 0.99316 1.88052 1.18882 1.27109 1.95207 1.23137 0.95103 0.85414 0.99928 1.21503 0.91275 0.98831 0.89698 1.47151 1.67729 1.08601 1.09009 1.19658 0.97698 0.73211 0.98081 1.21380 0.96195 0.93546 1.45525 0.90864 1.24807 0.95141 0.98308 0.94634 1.69905 1.18163 1.17199 1.48618 0.86883 0.82502 0.81360 0.79254 1.20035 1.21235 1.18622 1.15903 0.79023 0.80022 0.84838 1.90892 1.52379 1.72027 1.28950 1.42768 1.74523 1.05481 1.10880 1.16494 0.94709 0.90025 0.90106 1.21331 0.98127 1.01729 0.93223 1.17381 0.91474 0.95606 0.88989 1.91494 1.63647 1.91772 1.64783 1.20805 0.97618 0.96820 1.00951 1.20756 1.01793 1.01301 0.94430 1.18722 0.91574 0.95833 0.90589 1.86043 1.48952 1.42665 1.45284 1.23039 0.95562 0.85274 1.02734 0.94523 0.89830 0.94482 0.92746 0.93387 0.88194 0.90423 0.93669 0.94778 0.92688 0.75650 0.81606 0.84706 0.84453 0.92673 0.88303 0.92655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.02 9.53 -35.23 -0.34 -6.35 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.74 5.62 -4.04 -0.02 1.72 16 5 N -0.59 -12.32 2.42 -180.81 -0.44 -12.76 16 6 C 0.23 5.87 4.05 -5.19 -0.02 5.85 16 7 C -0.53 -15.35 9.94 -34.45 -0.34 -15.69 16 8 H 0.07 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 11 Si 0.87 22.16 27.47 -169.99 -4.67 17.49 16 12 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 14 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 15 C 0.70 14.71 8.13 -86.92 -0.71 14.00 16 16 O -0.57 -14.16 13.34 5.29 0.07 -14.09 16 17 N -0.69 -11.22 5.07 -14.11 -0.07 -11.29 16 18 C 0.18 2.90 6.32 -83.49 -0.53 2.37 16 19 C -0.12 -2.10 8.67 -39.35 -0.34 -2.44 16 20 C 0.09 1.28 7.29 -39.44 -0.29 0.99 16 21 F -0.14 -2.18 17.26 2.25 0.04 -2.14 16 22 C -0.14 -1.65 10.02 -39.49 -0.40 -2.04 16 23 C -0.16 -1.72 9.03 -39.47 -0.36 -2.07 16 24 C 0.08 1.01 6.70 -39.09 -0.26 0.75 16 25 O -0.32 -3.40 10.06 -19.82 -0.20 -3.60 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 1.65 8.07 -51.93 -0.42 1.24 16 33 H 0.08 0.96 6.30 -51.93 -0.33 0.63 16 34 H 0.05 1.12 6.17 -51.93 -0.32 0.80 16 35 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.41 5.44 6.26 -40.82 -0.26 5.18 16 38 H 0.17 3.35 6.20 -52.49 -0.33 3.03 16 39 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.14 0.98 6.29 -52.49 -0.33 0.65 16 41 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.28 7.67 -51.92 -0.40 -0.12 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -36.21 362.95 -6.06 -42.27 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.68 Total: 3.42 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.02 Total: 8.97 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.26 Total: -51.45 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.46 Total: -24.04 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.21 -6.06 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092103459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.412 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds