Wall clock time and date at job start Tue Mar 31 2020 14:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.52999 * 109.46882 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47530 * 65.00135 * 4 3 2 6 6 C 1.46502 * 120.00168 * 270.00107 * 5 4 3 7 7 C 1.50696 * 109.47183 * 269.99721 * 6 5 4 8 8 H 1.07999 * 119.99846 * 0.02562 * 7 6 5 9 9 C 1.37868 * 119.99987 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00007 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00255 * 0.02562 * 9 7 6 12 12 H 1.48491 * 109.46851 * 89.99893 * 11 9 7 13 13 H 1.48499 * 109.46809 * 210.00280 * 11 9 7 14 14 H 1.48501 * 109.46888 * 329.99957 * 11 9 7 15 15 C 1.34783 * 119.99910 * 89.99762 * 5 4 3 16 16 O 1.21590 * 119.99822 * 180.02562 * 15 5 4 17 17 N 1.34773 * 120.00070 * 0.02562 * 15 5 4 18 18 C 1.40162 * 120.00249 * 184.43762 * 17 15 5 19 19 C 1.38708 * 120.07201 * 325.34750 * 18 17 15 20 20 C 1.38388 * 119.96164 * 179.97438 * 19 18 17 21 21 F 1.35095 * 119.94364 * 179.97438 * 20 19 18 22 22 C 1.38468 * 120.10862 * 0.02562 * 20 19 18 23 23 C 1.38255 * 120.15207 * 359.97438 * 22 20 19 24 24 C 1.38527 * 120.03706 * 0.02562 * 23 22 20 25 25 O 1.36024 * 120.05245 * 180.27564 * 24 23 22 26 26 C 1.42901 * 117.00487 * 359.72083 * 25 24 23 27 27 H 1.08992 * 109.47241 * 59.99876 * 1 2 3 28 28 H 1.08997 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47277 * 299.99643 * 1 2 3 30 30 H 1.08996 * 109.46907 * 60.00300 * 3 2 1 31 31 H 1.08997 * 109.47639 * 300.00102 * 3 2 1 32 32 H 1.09003 * 109.47124 * 305.00168 * 4 3 2 33 33 H 1.09005 * 109.47312 * 185.00355 * 4 3 2 34 34 H 1.08997 * 109.46690 * 29.99792 * 6 5 4 35 35 H 1.08996 * 109.46883 * 149.99697 * 6 5 4 36 36 H 0.97001 * 119.99750 * 179.97438 * 10 9 7 37 37 H 0.97010 * 120.00009 * 4.43886 * 17 15 5 38 38 H 1.08001 * 120.01763 * 359.95482 * 19 18 17 39 39 H 1.08001 * 119.92229 * 180.02562 * 22 20 19 40 40 H 1.07999 * 119.98127 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.47401 * 59.99584 * 26 25 24 42 42 H 1.08994 * 109.47281 * 180.02562 * 26 25 24 43 43 H 1.09010 * 109.46961 * 300.00327 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1053 -0.8920 -1.3428 7 6 5.5010 -1.2977 -0.9450 8 1 6.2195 -0.5459 -0.6537 9 6 5.8603 -2.6287 -0.9518 10 7 7.0786 -2.9828 -0.6051 11 14 4.6173 -3.9292 -1.4549 12 1 4.7027 -4.1550 -2.9201 13 1 4.9113 -5.1975 -0.7406 14 1 3.2497 -3.4689 -1.1038 15 6 4.2615 1.3339 -2.3218 16 8 4.6265 0.8191 -3.3611 17 7 4.1427 2.6738 -2.2388 18 6 4.3496 3.4675 -3.3754 19 6 5.2996 3.0995 -4.3166 20 6 5.5015 3.8845 -5.4383 21 9 6.4273 3.5260 -6.3545 22 6 4.7570 5.0374 -5.6224 23 6 3.8089 5.4086 -4.6872 24 6 3.6017 4.6273 -3.5621 25 8 2.6650 4.9892 -2.6446 26 6 1.9352 6.1907 -2.9015 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1766 0.0890 34 1 3.3853 -1.3628 -0.6735 35 1 3.9121 -1.2112 -2.3669 36 1 7.3312 -3.9193 -0.6095 37 1 3.9141 3.0890 -1.3923 38 1 5.8816 2.2009 -4.1740 39 1 4.9168 5.6476 -6.4991 40 1 3.2300 6.3085 -4.8333 41 1 1.3988 6.0952 -3.8456 42 1 1.2232 6.3629 -2.0944 43 1 2.6275 7.0307 -2.9604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092103459.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:30 Heat of formation + Delta-G solvation = -133.211624 kcal Electronic energy + Delta-G solvation = -28550.585545 eV Core-core repulsion = 24318.091017 eV Total energy + Delta-G solvation = -4232.494529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85400 -41.98145 -40.66381 -38.90120 -38.16143 -36.66918 -35.89339 -34.65088 -31.56563 -31.21557 -30.56193 -29.12922 -27.95062 -27.11509 -25.07998 -24.09824 -23.54709 -23.13848 -20.96068 -19.83747 -19.13610 -18.86606 -18.65317 -17.74255 -17.50490 -17.10476 -16.82439 -16.78623 -16.46332 -16.36697 -16.24965 -15.68510 -15.62965 -15.47846 -15.09493 -15.04220 -14.47011 -14.14375 -13.84127 -13.79494 -13.62186 -13.34207 -13.15957 -13.01204 -12.79773 -12.74127 -12.47368 -12.16191 -12.04391 -11.96185 -11.86250 -11.72359 -11.47504 -11.03338 -10.80223 -10.56297 -9.78720 -9.43818 -8.80990 -8.32037 -6.35678 0.08425 0.14692 1.32824 1.36882 1.47084 1.58888 2.05984 2.24890 2.33086 2.58828 2.83697 2.91578 3.03987 3.34061 3.72789 3.91061 4.09668 4.13233 4.17118 4.27785 4.30763 4.46047 4.48798 4.52511 4.54467 4.59535 4.70822 4.81847 4.84472 4.87229 4.89482 4.97727 4.98729 5.07871 5.15500 5.40538 5.47670 5.55299 5.70852 5.92656 6.27316 6.32833 6.36445 6.64577 6.95254 7.25375 7.53662 8.84955 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011129 B = 0.004434 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.303363 B = 6312.703494 C = 8243.354685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.415 6.415 3 C 0.050 3.950 4 C 0.103 3.897 5 N -0.600 5.600 6 C 0.252 3.748 7 C -0.533 4.533 8 H 0.030 0.970 9 C 0.014 3.986 10 N -0.945 5.945 11 Si 0.943 3.057 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.240 1.240 15 C 0.695 3.305 16 O -0.618 6.618 17 N -0.668 5.668 18 C 0.150 3.850 19 C -0.149 4.149 20 C 0.060 3.940 21 F -0.151 7.151 22 C -0.119 4.119 23 C -0.148 4.148 24 C 0.099 3.901 25 O -0.326 6.326 26 C 0.015 3.985 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.011 0.989 36 H 0.268 0.732 37 H 0.420 0.580 38 H 0.119 0.881 39 H 0.171 0.829 40 H 0.186 0.814 41 H 0.068 0.932 42 H 0.120 0.880 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 23.324 -1.766 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.028 4.028 4 C -0.019 4.019 5 N -0.333 5.333 6 C 0.130 3.870 7 C -0.572 4.572 8 H 0.048 0.952 9 C -0.184 4.184 10 N -0.586 5.586 11 Si 0.766 3.234 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.164 1.164 15 C 0.397 3.603 16 O -0.498 6.498 17 N -0.319 5.319 18 C 0.054 3.946 19 C -0.171 4.171 20 C 0.040 3.960 21 F -0.130 7.130 22 C -0.138 4.138 23 C -0.166 4.166 24 C 0.051 3.949 25 O -0.240 6.240 26 C -0.079 4.079 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.077 0.923 37 H 0.260 0.740 38 H 0.137 0.863 39 H 0.189 0.811 40 H 0.203 0.797 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.567 22.456 -2.224 27.994 hybrid contribution 0.345 -0.845 -0.100 0.918 sum -16.222 21.611 -2.324 27.122 Atomic orbital electron populations 1.22869 0.79844 1.03285 1.00813 1.87982 1.21265 1.28663 1.95552 1.23111 0.92740 0.85010 1.01914 1.21856 0.93682 0.99698 0.86702 1.47064 1.68067 1.07225 1.10930 1.19168 0.95130 0.76280 0.96459 1.21606 0.97484 0.92943 1.45190 0.95196 1.25756 0.97270 1.00867 0.94493 1.70050 1.20412 1.18040 1.50072 0.85777 0.80660 0.78433 0.78506 1.20365 1.19763 1.16369 1.16096 0.78601 0.81467 0.84103 1.90858 1.54492 1.73451 1.30989 1.42374 1.73811 1.03642 1.12046 1.16665 0.96233 0.91720 0.90010 1.21058 0.99373 1.01207 0.95481 1.17624 0.92712 0.97128 0.88564 1.91451 1.64352 1.92145 1.65059 1.21212 0.95776 0.94909 1.01911 1.21276 1.00891 1.01916 0.92565 1.18691 0.90790 0.94252 0.91211 1.86050 1.48374 1.44754 1.44778 1.23463 0.96040 0.83911 1.04455 0.93954 0.89667 0.91928 0.88631 0.93139 0.89512 0.87246 0.92655 0.97094 0.92336 0.73966 0.86333 0.81109 0.79676 0.91332 0.86215 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.68 9.53 -148.98 -1.42 -14.10 16 3 C 0.05 1.22 6.28 71.98 0.45 1.68 16 4 C 0.10 3.18 5.62 86.38 0.49 3.67 16 5 N -0.60 -25.86 2.42 -844.20 -2.04 -27.90 16 6 C 0.25 13.12 4.05 85.63 0.35 13.47 16 7 C -0.53 -32.73 9.94 25.60 0.25 -32.48 16 8 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 9 C 0.01 0.86 5.47 84.65 0.46 1.32 16 10 N -0.95 -61.63 13.96 21.44 0.30 -61.33 16 11 Si 0.94 46.87 27.47 68.60 1.88 48.76 16 12 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.24 -11.03 6.54 99.48 0.65 -10.38 16 15 C 0.70 30.73 8.13 179.05 1.45 32.18 16 16 O -0.62 -33.36 13.34 -4.00 -0.05 -33.41 16 17 N -0.67 -22.24 5.07 -316.82 -1.61 -23.85 16 18 C 0.15 4.77 6.32 38.17 0.24 5.01 16 19 C -0.15 -5.47 8.67 22.42 0.19 -5.28 16 20 C 0.06 1.81 7.29 22.36 0.16 1.97 16 21 F -0.15 -4.98 17.26 44.97 0.78 -4.21 16 22 C -0.12 -2.39 10.02 22.33 0.22 -2.17 16 23 C -0.15 -2.45 9.03 22.34 0.20 -2.25 16 24 C 0.10 2.22 6.70 22.58 0.15 2.37 16 25 O -0.33 -5.76 10.06 -93.82 -0.94 -6.70 16 26 C 0.02 0.11 9.81 113.37 1.11 1.22 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 2.90 8.07 -2.39 -0.02 2.88 16 33 H 0.11 2.57 6.30 -2.38 -0.02 2.55 16 34 H 0.06 2.77 6.17 -2.39 -0.01 2.75 16 35 H 0.01 0.62 6.85 -2.39 -0.02 0.60 16 36 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 37 H 0.42 10.92 6.26 -92.70 -0.58 10.34 16 38 H 0.12 5.44 6.20 -2.91 -0.02 5.42 16 39 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 40 H 0.19 1.35 6.29 -2.91 -0.02 1.33 16 41 H 0.07 0.36 7.65 -2.39 -0.02 0.35 16 42 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.07 0.30 7.67 -2.38 -0.02 0.28 16 Total: -1.00 -87.31 362.95 4.30 -83.01 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.41 Total: 17.15 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 6.99 Total: 22.57 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -3.35 Total: -113.08 kcal Atomic # 8 Polarization: -51.80 SS G_CDS: -2.42 Total: -54.21 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.21 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.88 Total: 48.76 kcal Total: -87.31 4.30 -83.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092103459.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.197 kcal (2) G-P(sol) polarization free energy of solvation -87.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds