Wall clock time and date at job start Tue Mar 31 2020 14:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37095 * 120.00324 * 2 1 4 4 H 1.07998 * 119.99804 * 142.82263 * 3 2 1 5 5 C 1.38948 * 119.99849 * 322.82076 * 3 2 1 6 6 N 1.31419 * 119.99655 * 158.40685 * 5 3 2 7 7 Si 1.86801 * 120.00333 * 338.41139 * 5 3 2 8 8 H 1.48499 * 109.47024 * 95.71531 * 7 5 3 9 9 H 1.48495 * 109.46837 * 215.71985 * 7 5 3 10 10 H 1.48501 * 109.46688 * 335.71636 * 7 5 3 11 11 C 1.34780 * 119.99462 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99632 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00242 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.46910 * 179.97438 * 13 11 2 15 15 C 1.38279 * 119.97567 * 269.98049 * 14 13 11 16 16 C 1.38254 * 120.11201 * 180.02562 * 15 14 13 17 17 C 1.38160 * 120.05540 * 359.67697 * 16 15 14 18 18 C 1.38713 * 119.94284 * 0.61569 * 17 16 15 19 19 O 1.35896 * 120.05706 * 179.67540 * 18 17 16 20 20 C 1.42902 * 117.00077 * 359.73517 * 19 18 17 21 21 C 1.50700 * 109.47159 * 179.97438 * 20 19 18 22 22 C 1.38668 * 120.41629 * 270.24248 * 21 20 19 23 23 C 1.38637 * 118.42167 * 180.24396 * 22 21 20 24 24 C 1.38218 * 119.15749 * 359.75654 * 23 22 21 25 25 N 1.31858 * 120.76710 * 359.97438 * 24 23 22 26 26 C 1.31880 * 121.72430 * 0.02562 * 25 24 23 27 27 C 1.38131 * 119.97065 * 89.99912 * 14 13 11 28 28 H 1.08992 * 109.47385 * 265.13691 * 1 2 3 29 29 H 1.09005 * 109.46427 * 25.14020 * 1 2 3 30 30 H 1.09006 * 109.47165 * 145.13491 * 1 2 3 31 31 H 0.96996 * 119.99490 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.46717 * 59.99875 * 13 11 2 33 33 H 1.09000 * 109.46939 * 299.99779 * 13 11 2 34 34 H 1.08001 * 119.94738 * 0.02562 * 15 14 13 35 35 H 1.07993 * 119.96957 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.03249 * 180.29791 * 17 16 15 37 37 H 1.08996 * 109.47069 * 59.99069 * 20 19 18 38 38 H 1.09006 * 109.46563 * 299.99470 * 20 19 18 39 39 H 1.08005 * 120.78922 * 359.97438 * 22 21 20 40 40 H 1.07998 * 120.41748 * 179.73810 * 23 22 21 41 41 H 1.07996 * 119.61870 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.62095 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.02451 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2822 0.5652 5 6 1.6676 2.2683 -0.7272 6 7 2.0435 3.4889 -0.4176 7 14 0.4842 1.9867 -2.1448 8 1 -0.9111 2.1586 -1.6663 9 1 0.7620 2.9682 -3.2239 10 1 0.6609 0.6093 -2.6709 11 6 2.1388 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3852 -2.4724 0.0005 14 6 2.3645 -3.6178 0.0005 15 6 2.8131 -4.1432 -1.1973 16 6 3.7111 -5.1944 -1.2006 17 6 4.1676 -5.7182 -0.0064 18 6 3.7145 -5.1970 1.1965 19 8 4.1569 -5.7148 2.3725 20 6 5.0842 -6.7994 2.2957 21 6 5.4601 -7.2384 3.6875 22 6 6.5410 -6.6623 4.3374 23 6 6.8532 -7.1010 5.6150 24 6 6.0789 -8.0875 6.1962 25 7 5.0546 -8.6091 5.5502 26 6 4.7286 -8.2163 4.3342 27 6 2.8129 -4.1423 1.1971 28 1 -0.3634 -0.0871 1.0239 29 1 -0.3632 0.9304 -0.4366 30 1 -0.3634 -0.8432 -0.5875 31 1 1.7061 4.2436 -0.9250 32 1 0.7589 -2.5302 -0.8896 33 1 0.7582 -2.5299 0.8903 34 1 2.4615 -3.7318 -2.1319 35 1 4.0597 -5.6033 -2.1374 36 1 4.8728 -6.5362 -0.0095 37 1 5.9784 -6.4759 1.7631 38 1 4.6255 -7.6325 1.7630 39 1 7.1285 -5.8932 3.8581 40 1 7.6909 -6.6776 6.1491 41 1 6.3152 -8.4346 7.1912 42 1 3.8829 -8.6671 3.8363 43 1 2.4616 -3.7321 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092367880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:40 Heat of formation + Delta-G solvation = 7.928506 kcal Electronic energy + Delta-G solvation = -25925.120931 eV Core-core repulsion = 22129.515922 eV Total energy + Delta-G solvation = -3795.605009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.69717 -39.95534 -38.77256 -37.32706 -34.77485 -33.43987 -32.42568 -32.17818 -31.85875 -29.97034 -27.77883 -26.96574 -26.35380 -24.47805 -23.94897 -22.73187 -22.38303 -21.05238 -18.98659 -17.61009 -17.50553 -17.05033 -16.95088 -16.39517 -16.07253 -15.90120 -15.50800 -15.30988 -15.17154 -14.51166 -14.25326 -14.02206 -13.78876 -13.51391 -13.42348 -13.08538 -12.78231 -12.61740 -12.49377 -12.44934 -12.18682 -11.90965 -11.70036 -11.44131 -11.31861 -10.98009 -10.76946 -10.74634 -10.35821 -10.20245 -9.92452 -9.82794 -9.46918 -9.07250 -8.78395 -8.38210 -8.03812 -7.72979 -6.38733 -3.95486 0.61820 0.90055 1.49862 1.63892 3.02394 3.03617 3.21308 3.25277 3.61066 3.74772 3.89103 4.06714 4.14819 4.36358 4.38957 4.54890 4.58834 4.60042 4.84407 4.93441 4.96443 5.00515 5.04138 5.20494 5.23488 5.37881 5.44439 5.52600 5.62991 5.66815 5.72450 5.81384 5.84935 5.87260 5.94235 6.10217 6.24125 6.28482 6.28739 6.41198 6.57592 6.82261 6.90660 7.46122 7.55525 7.57770 8.29346 8.52228 8.97989 9.32616 9.78531 10.73556 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.002317 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.486709 B =12079.686053 C =12730.882265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.473 5.473 3 C -0.315 4.315 4 H 0.105 0.895 5 C 0.057 3.943 6 N -0.865 5.865 7 Si 0.881 3.119 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.265 1.265 11 C 0.467 3.533 12 O -0.556 6.556 13 C -0.105 4.105 14 C -0.007 4.007 15 C -0.141 4.141 16 C -0.081 4.081 17 C -0.216 4.216 18 C 0.125 3.875 19 O -0.311 6.311 20 C 0.107 3.893 21 C -0.145 4.145 22 C -0.050 4.050 23 C -0.175 4.175 24 C 0.104 3.896 25 N -0.488 5.488 26 C 0.123 3.877 27 C -0.135 4.135 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.273 0.727 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -23.166 5.274 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.196 5.196 3 C -0.442 4.442 4 H 0.122 0.878 5 C -0.149 4.149 6 N -0.502 5.502 7 Si 0.709 3.291 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.189 1.189 11 C 0.255 3.745 12 O -0.437 6.437 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.159 4.159 16 C -0.099 4.099 17 C -0.235 4.235 18 C 0.081 3.919 19 O -0.225 6.225 20 C 0.031 3.969 21 C -0.147 4.147 22 C -0.076 4.076 23 C -0.195 4.195 24 C -0.052 4.052 25 N -0.196 5.196 26 C -0.034 4.034 27 C -0.153 4.153 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.937 -23.534 5.856 24.429 hybrid contribution -0.050 0.778 -1.363 1.570 sum 2.887 -22.757 4.494 23.375 Atomic orbital electron populations 1.22010 0.83455 1.01573 1.01032 1.43690 1.04001 1.05670 1.66244 1.19048 1.10138 0.85410 1.29572 0.87773 1.25385 0.97534 0.94796 0.97153 1.69761 1.43974 0.98070 1.38381 0.86905 0.80179 0.78949 0.83084 1.20294 1.21504 1.18930 1.20064 0.88186 0.84229 0.82053 1.90587 1.13723 1.86816 1.52563 1.20778 0.97431 0.92265 1.04070 1.19191 0.95557 0.93684 0.92323 1.20915 0.99697 0.97608 0.97670 1.20812 0.96125 0.95833 0.97148 1.21079 1.05635 1.04485 0.92318 1.18830 0.94871 0.94075 0.84147 1.86125 1.59306 1.48400 1.28685 1.21410 0.92971 0.89230 0.93312 1.20562 0.97780 0.99287 0.97083 1.21617 0.95247 0.96596 0.94174 1.22194 1.01929 0.99198 0.96178 1.22873 0.90305 0.92557 0.99507 1.67760 1.16136 1.27095 1.08637 1.22732 0.97148 0.93184 0.90354 1.20205 0.99755 0.96700 0.98659 0.92951 0.91638 0.92699 0.91627 0.88874 0.88949 0.86078 0.86032 0.85997 0.90890 0.90814 0.84369 0.84356 0.82518 0.82532 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.22 8.78 59.85 0.53 1.74 16 2 N -0.47 -11.51 2.59 -122.19 -0.32 -11.83 16 3 C -0.31 -9.03 9.37 -14.93 -0.14 -9.17 16 4 H 0.10 3.37 7.90 -52.49 -0.41 2.96 16 5 C 0.06 1.58 5.29 -17.47 -0.09 1.49 16 6 N -0.87 -25.25 13.96 55.50 0.77 -24.48 16 7 Si 0.88 20.53 24.96 -169.99 -4.24 16.29 16 8 H -0.28 -5.94 6.69 56.52 0.38 -5.56 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 11 C 0.47 10.85 7.62 -10.98 -0.08 10.77 16 12 O -0.56 -15.25 15.90 5.55 0.09 -15.16 16 13 C -0.11 -1.78 4.45 -29.03 -0.13 -1.91 16 14 C -0.01 -0.12 4.37 -104.65 -0.46 -0.57 16 15 C -0.14 -2.16 9.70 -39.56 -0.38 -2.54 16 16 C -0.08 -1.08 10.04 -39.60 -0.40 -1.47 16 17 C -0.22 -2.79 9.04 -39.43 -0.36 -3.14 16 18 C 0.13 1.84 6.69 -39.22 -0.26 1.58 16 19 O -0.31 -4.19 10.12 -19.41 -0.20 -4.38 16 20 C 0.11 1.02 4.89 36.01 0.18 1.19 16 21 C -0.15 -1.38 5.53 -104.48 -0.58 -1.96 16 22 C -0.05 -0.44 9.86 -39.28 -0.39 -0.82 16 23 C -0.18 -1.32 10.11 -39.44 -0.40 -1.72 16 24 C 0.10 0.86 11.18 -17.55 -0.20 0.67 16 25 N -0.49 -5.07 10.36 -13.26 -0.14 -5.21 16 26 C 0.12 1.18 10.86 -17.55 -0.19 0.99 16 27 C -0.13 -2.20 9.64 -39.43 -0.38 -2.58 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.35 3.42 -51.93 -0.18 1.17 16 30 H 0.05 0.86 6.64 -51.93 -0.34 0.51 16 31 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.09 1.36 7.35 -51.93 -0.38 0.98 16 33 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 34 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 37 H 0.07 0.62 7.60 -51.93 -0.39 0.23 16 38 H 0.07 0.56 7.63 -51.93 -0.40 0.17 16 39 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -35.56 363.97 -7.68 -43.24 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.40 Total: 3.52 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -3.73 Total: -7.47 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.32 Total: -41.51 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.11 Total: -19.55 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.24 Total: 16.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.56 -7.68 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.166 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds