Wall clock time and date at job start Tue Mar 31 2020 14:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37095 * 120.00324 * 2 1 4 4 H 1.07998 * 119.99804 * 142.82263 * 3 2 1 5 5 C 1.38948 * 119.99849 * 322.82076 * 3 2 1 6 6 N 1.31419 * 119.99655 * 158.40685 * 5 3 2 7 7 Si 1.86801 * 120.00333 * 338.41139 * 5 3 2 8 8 H 1.48499 * 109.47024 * 95.71531 * 7 5 3 9 9 H 1.48495 * 109.46837 * 215.71985 * 7 5 3 10 10 H 1.48501 * 109.46688 * 335.71636 * 7 5 3 11 11 C 1.34780 * 119.99462 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99632 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00242 * 0.02562 * 11 2 1 14 14 C 1.50699 * 109.46910 * 179.97438 * 13 11 2 15 15 C 1.38279 * 119.97567 * 269.98049 * 14 13 11 16 16 C 1.38254 * 120.11201 * 180.02562 * 15 14 13 17 17 C 1.38160 * 120.05540 * 359.67697 * 16 15 14 18 18 C 1.38713 * 119.94284 * 0.61569 * 17 16 15 19 19 O 1.35896 * 120.05706 * 179.67540 * 18 17 16 20 20 C 1.42902 * 117.00077 * 359.73517 * 19 18 17 21 21 C 1.50700 * 109.47159 * 179.97438 * 20 19 18 22 22 C 1.38668 * 120.41629 * 270.24248 * 21 20 19 23 23 C 1.38637 * 118.42167 * 180.24396 * 22 21 20 24 24 C 1.38218 * 119.15749 * 359.75654 * 23 22 21 25 25 N 1.31858 * 120.76710 * 359.97438 * 24 23 22 26 26 C 1.31880 * 121.72430 * 0.02562 * 25 24 23 27 27 C 1.38131 * 119.97065 * 89.99912 * 14 13 11 28 28 H 1.08992 * 109.47385 * 265.13691 * 1 2 3 29 29 H 1.09005 * 109.46427 * 25.14020 * 1 2 3 30 30 H 1.09006 * 109.47165 * 145.13491 * 1 2 3 31 31 H 0.96996 * 119.99490 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.46717 * 59.99875 * 13 11 2 33 33 H 1.09000 * 109.46939 * 299.99779 * 13 11 2 34 34 H 1.08001 * 119.94738 * 0.02562 * 15 14 13 35 35 H 1.07993 * 119.96957 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.03249 * 180.29791 * 17 16 15 37 37 H 1.08996 * 109.47069 * 59.99069 * 20 19 18 38 38 H 1.09006 * 109.46563 * 299.99470 * 20 19 18 39 39 H 1.08005 * 120.78922 * 359.97438 * 22 21 20 40 40 H 1.07998 * 120.41748 * 179.73810 * 23 22 21 41 41 H 1.07996 * 119.61870 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.62095 * 179.97438 * 26 25 24 43 43 H 1.08000 * 120.02451 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0659 1.2822 0.5652 5 6 1.6676 2.2683 -0.7272 6 7 2.0435 3.4889 -0.4176 7 14 0.4842 1.9867 -2.1448 8 1 -0.9111 2.1586 -1.6663 9 1 0.7620 2.9682 -3.2239 10 1 0.6609 0.6093 -2.6709 11 6 2.1388 -1.1673 0.0005 12 8 3.3517 -1.1673 0.0010 13 6 1.3852 -2.4724 0.0005 14 6 2.3645 -3.6178 0.0005 15 6 2.8131 -4.1432 -1.1973 16 6 3.7111 -5.1944 -1.2006 17 6 4.1676 -5.7182 -0.0064 18 6 3.7145 -5.1970 1.1965 19 8 4.1569 -5.7148 2.3725 20 6 5.0842 -6.7994 2.2957 21 6 5.4601 -7.2384 3.6875 22 6 6.5410 -6.6623 4.3374 23 6 6.8532 -7.1010 5.6150 24 6 6.0789 -8.0875 6.1962 25 7 5.0546 -8.6091 5.5502 26 6 4.7286 -8.2163 4.3342 27 6 2.8129 -4.1423 1.1971 28 1 -0.3634 -0.0871 1.0239 29 1 -0.3632 0.9304 -0.4366 30 1 -0.3634 -0.8432 -0.5875 31 1 1.7061 4.2436 -0.9250 32 1 0.7589 -2.5302 -0.8896 33 1 0.7582 -2.5299 0.8903 34 1 2.4615 -3.7318 -2.1319 35 1 4.0597 -5.6033 -2.1374 36 1 4.8728 -6.5362 -0.0095 37 1 5.9784 -6.4759 1.7631 38 1 4.6255 -7.6325 1.7630 39 1 7.1285 -5.8932 3.8581 40 1 7.6909 -6.6776 6.1491 41 1 6.3152 -8.4346 7.1912 42 1 3.8829 -8.6671 3.8363 43 1 2.4616 -3.7321 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092367880.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:39 Heat of formation + Delta-G solvation = -15.410017 kcal Electronic energy + Delta-G solvation = -25926.132965 eV Core-core repulsion = 22129.515922 eV Total energy + Delta-G solvation = -3796.617043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.49877 -40.97936 -40.33578 -38.46447 -36.67183 -34.25963 -34.12383 -33.38486 -32.83186 -31.01864 -29.17607 -28.03536 -27.72707 -26.28710 -24.60106 -23.62059 -23.40174 -22.16113 -20.61567 -19.05254 -18.71398 -18.16056 -17.88767 -17.65521 -17.34599 -17.23448 -16.93729 -16.27206 -16.20346 -15.74295 -15.59678 -15.10839 -14.79121 -14.60308 -14.56451 -14.21466 -14.12401 -14.06074 -14.01844 -13.66573 -13.48816 -13.22926 -12.87646 -12.62559 -12.56553 -12.45972 -12.21816 -11.91500 -11.80941 -11.78280 -11.05516 -10.88506 -10.49776 -10.45318 -10.12096 -9.72058 -9.69774 -9.11476 -8.51489 -6.14463 -0.04344 0.24742 0.38316 0.53979 1.20964 1.33798 1.46845 1.96921 2.18606 2.20260 2.64362 2.89218 2.91295 3.06539 3.43933 3.66489 3.76383 3.79655 3.92785 3.95195 4.00561 4.11265 4.16049 4.23920 4.30710 4.37525 4.39603 4.45111 4.53477 4.59846 4.64985 4.69214 4.78497 4.82716 4.85640 5.09895 5.11169 5.20932 5.34091 5.49747 5.53366 5.67436 5.69891 5.84053 6.02943 6.46576 6.56901 6.92395 6.94780 7.30341 7.89058 8.66187 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.002317 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.486709 B =12079.686053 C =12730.882265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.487 5.487 3 C -0.336 4.336 4 H 0.038 0.962 5 C 0.005 3.995 6 N -0.915 5.915 7 Si 0.959 3.041 8 H -0.238 1.238 9 H -0.292 1.292 10 H -0.253 1.253 11 C 0.461 3.539 12 O -0.611 6.611 13 C -0.091 4.091 14 C -0.030 4.030 15 C -0.158 4.158 16 C -0.079 4.079 17 C -0.211 4.211 18 C 0.119 3.881 19 O -0.329 6.329 20 C 0.102 3.898 21 C -0.157 4.157 22 C -0.064 4.064 23 C -0.173 4.173 24 C 0.096 3.904 25 N -0.515 5.515 26 C 0.111 3.889 27 C -0.161 4.161 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.280 0.720 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.183 0.817 42 H 0.168 0.832 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -25.685 3.915 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.210 5.210 3 C -0.464 4.464 4 H 0.056 0.944 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.782 3.218 8 H -0.163 1.163 9 H -0.219 1.219 10 H -0.177 1.177 11 C 0.251 3.749 12 O -0.495 6.495 13 C -0.130 4.130 14 C -0.031 4.031 15 C -0.176 4.176 16 C -0.097 4.097 17 C -0.229 4.229 18 C 0.074 3.926 19 O -0.244 6.244 20 C 0.028 3.972 21 C -0.159 4.159 22 C -0.090 4.090 23 C -0.192 4.192 24 C -0.060 4.060 25 N -0.223 5.223 26 C -0.046 4.046 27 C -0.180 4.180 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.173 0.827 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.165 0.835 40 H 0.183 0.817 41 H 0.200 0.800 42 H 0.186 0.814 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.383 -26.072 4.523 26.497 hybrid contribution 0.599 1.504 -0.779 1.796 sum 1.982 -24.568 3.744 24.930 Atomic orbital electron populations 1.22287 0.79956 1.02973 1.03473 1.43848 1.06160 1.04496 1.66503 1.18630 1.09298 0.88180 1.30305 0.94384 1.26274 1.00104 0.93779 0.99478 1.69889 1.46252 0.99303 1.39781 0.85692 0.79122 0.79052 0.77969 1.16257 1.21914 1.17713 1.21177 0.87974 0.85961 0.79799 1.90546 1.16573 1.87930 1.54497 1.20733 0.97300 0.88209 1.06802 1.19278 0.96578 0.94172 0.93025 1.21177 1.00464 0.98506 0.97488 1.21226 0.94952 0.94870 0.98678 1.21461 1.05331 1.04743 0.91409 1.18943 0.94575 0.93815 0.85246 1.86100 1.60094 1.49611 1.28566 1.21659 0.92851 0.88832 0.93898 1.20632 0.98283 0.99654 0.97325 1.21906 0.95333 0.96862 0.94866 1.22506 1.02333 0.98598 0.95787 1.23376 0.89725 0.92447 1.00464 1.67778 1.17288 1.28108 1.09168 1.22966 0.97645 0.93511 0.90470 1.20313 1.01221 0.98079 0.98401 0.90702 0.92635 0.88043 0.91051 0.85595 0.86359 0.85235 0.82825 0.82723 0.89806 0.88667 0.83478 0.81709 0.80024 0.81450 0.86530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.96 8.78 127.77 1.12 3.08 16 2 N -0.49 -23.72 2.59 -658.89 -1.70 -25.43 16 3 C -0.34 -20.21 9.37 84.04 0.79 -19.42 16 4 H 0.04 2.71 7.90 -2.91 -0.02 2.68 16 5 C 0.01 0.29 5.29 84.92 0.45 0.74 16 6 N -0.91 -55.35 13.96 21.66 0.30 -55.04 16 7 Si 0.96 41.66 24.96 68.60 1.71 43.37 16 8 H -0.24 -8.89 6.69 99.48 0.67 -8.23 16 9 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 11 C 0.46 21.54 7.62 87.66 0.67 22.21 16 12 O -0.61 -34.99 15.90 -3.07 -0.05 -35.04 16 13 C -0.09 -2.91 4.45 29.10 0.13 -2.78 16 14 C -0.03 -0.98 4.37 -19.88 -0.09 -1.06 16 15 C -0.16 -4.58 9.70 22.28 0.22 -4.36 16 16 C -0.08 -1.90 10.04 22.26 0.22 -1.68 16 17 C -0.21 -4.93 9.04 22.36 0.20 -4.73 16 18 C 0.12 3.40 6.69 22.51 0.15 3.55 16 19 O -0.33 -8.68 10.12 -92.38 -0.93 -9.61 16 20 C 0.10 1.80 4.89 71.24 0.35 2.15 16 21 C -0.16 -2.85 5.53 -19.77 -0.11 -2.96 16 22 C -0.06 -1.05 9.86 22.47 0.22 -0.82 16 23 C -0.17 -2.35 10.11 22.36 0.23 -2.12 16 24 C 0.10 1.47 11.18 84.68 0.95 2.41 16 25 N -0.51 -10.34 10.36 -195.85 -2.03 -12.37 16 26 C 0.11 2.07 10.86 84.67 0.92 2.99 16 27 C -0.16 -5.29 9.64 22.37 0.22 -5.08 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.09 3.42 -2.38 -0.01 2.08 16 30 H 0.10 2.66 6.64 -2.38 -0.02 2.64 16 31 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.13 3.17 7.35 -2.39 -0.02 3.15 16 33 H 0.12 3.14 8.05 -2.39 -0.02 3.12 16 34 H 0.13 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.16 2.49 6.30 -2.91 -0.02 2.47 16 37 H 0.08 1.27 7.60 -2.39 -0.02 1.25 16 38 H 0.10 1.23 7.63 -2.38 -0.02 1.22 16 39 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 41 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.12 3.87 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -84.23 363.97 4.92 -79.31 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.99 Total: 22.68 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 6.63 Total: -7.88 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -3.43 Total: -92.84 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.98 Total: -44.65 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 1.71 Total: 43.37 kcal Total: -84.23 4.92 -79.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092367880.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.903 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds