Wall clock time and date at job start Tue Mar 31 2020 14:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34308 * 125.75536 * 2 1 4 4 C 1.38096 * 107.39982 * 180.16061 * 3 2 1 5 5 C 1.47557 * 126.41801 * 179.83428 * 4 3 2 6 6 O 1.21763 * 120.00055 * 359.71723 * 5 4 3 7 7 C 1.46359 * 119.99932 * 179.97438 * 5 4 3 8 8 C 1.34958 * 119.99977 * 179.72464 * 7 5 4 9 9 C 1.47161 * 120.00030 * 180.02562 * 8 7 5 10 10 C 1.39910 * 120.14405 * 0.02562 * 9 8 7 11 11 C 1.37893 * 119.93209 * 180.02562 * 10 9 8 12 12 C 1.38335 * 120.23546 * 359.97438 * 11 10 9 13 13 C 1.38877 * 120.29588 * 359.97438 * 12 11 10 14 14 O 1.35908 * 119.96852 * 180.02562 * 13 12 11 15 15 C 1.42899 * 116.99997 * 359.97438 * 14 13 12 16 16 C 1.52999 * 109.47260 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.47377 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99854 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47233 * 89.99875 * 21 19 17 23 23 H 1.48506 * 109.46930 * 210.00059 * 21 19 17 24 24 H 1.48502 * 109.47138 * 330.00027 * 21 19 17 25 25 C 1.38409 * 120.05864 * 359.76232 * 13 12 11 26 26 C 1.41285 * 107.16644 * 359.57642 * 4 3 2 27 27 N 1.30447 * 108.03441 * 0.26337 * 26 4 3 28 28 H 1.09000 * 109.46829 * 270.28783 * 1 2 3 29 29 H 1.08995 * 109.47177 * 30.28776 * 1 2 3 30 30 H 1.09005 * 109.46972 * 150.29011 * 1 2 3 31 31 H 1.08001 * 126.30347 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00300 * 359.73193 * 7 5 4 33 33 H 1.07992 * 119.99716 * 0.02562 * 8 7 5 34 34 H 1.07993 * 120.03415 * 359.97438 * 10 9 8 35 35 H 1.07994 * 119.88067 * 180.02562 * 11 10 9 36 36 H 1.07993 * 119.85272 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47524 * 300.00682 * 15 14 13 38 38 H 1.09003 * 109.46972 * 60.00315 * 15 14 13 39 39 H 1.09001 * 109.47282 * 300.00674 * 16 15 14 40 40 H 1.08997 * 109.46763 * 60.00555 * 16 15 14 41 41 H 0.97003 * 120.00238 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.11180 * 180.26187 * 25 13 12 43 43 H 1.08000 * 125.98438 * 180.26087 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2499 1.0899 0.0000 4 6 3.5606 0.6551 -0.0037 5 6 4.7659 1.5062 -0.0085 6 8 4.6550 2.7187 -0.0147 7 6 6.0948 0.8929 -0.0115 8 6 7.1972 1.6713 -0.0215 9 6 8.5334 1.0546 -0.0250 10 6 8.6644 -0.3383 -0.0186 11 6 9.9185 -0.9115 -0.0215 12 6 11.0489 -0.1140 -0.0312 13 6 10.9300 1.2696 -0.0387 14 8 12.0450 2.0467 -0.0487 15 6 13.3053 1.3731 -0.0504 16 6 14.4350 2.4048 -0.0615 17 6 15.7641 1.6945 -0.0639 18 1 15.7995 0.6150 -0.0578 19 6 16.9349 2.4225 -0.0730 20 7 18.0948 1.8026 -0.0746 21 14 16.8737 4.2895 -0.0829 22 1 16.8635 4.7919 1.3145 23 1 18.0664 4.8201 -0.7911 24 1 15.6426 4.7408 -0.7801 25 6 9.6772 1.8578 -0.0414 26 6 3.5313 -0.7575 0.0040 27 7 2.2828 -1.1355 0.0061 28 1 -0.3633 0.0052 1.0277 29 1 -0.3633 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9172 2.1174 -0.0004 32 1 6.1933 -0.1826 -0.0058 33 1 7.0988 2.7467 -0.0268 34 1 7.7842 -0.9639 -0.0106 35 1 10.0187 -1.9868 -0.0170 36 1 12.0281 -0.5695 -0.0329 37 1 13.3877 0.7541 0.8429 38 1 13.3793 0.7432 -0.9369 39 1 14.3528 3.0242 -0.9547 40 1 14.3608 3.0343 0.8252 41 1 18.9185 2.3148 -0.0814 42 1 9.5838 2.9337 -0.0515 43 1 4.3919 -1.4100 0.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102598831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:27 Heat of formation + Delta-G solvation = 39.790804 kcal Electronic energy + Delta-G solvation = -24563.285883 eV Core-core repulsion = 20769.062527 eV Total energy + Delta-G solvation = -3794.223356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75072 -39.95735 -39.07720 -37.50211 -34.09509 -33.79105 -33.30872 -31.27609 -30.92511 -30.20408 -29.15754 -27.74756 -25.55338 -24.61582 -22.66918 -22.54897 -21.57357 -20.89146 -20.16469 -19.11292 -18.03346 -17.52148 -16.74557 -16.11814 -16.03717 -15.83747 -15.61797 -15.51115 -15.04896 -14.82438 -14.45092 -14.30248 -13.97728 -13.55394 -13.42956 -13.24137 -13.18930 -13.08066 -13.06235 -12.63249 -12.24127 -11.95789 -11.66558 -11.48340 -11.33376 -10.93213 -10.78974 -10.32869 -10.22844 -10.08374 -10.01601 -10.00115 -9.84418 -9.37452 -9.15818 -8.64711 -8.49616 -7.99572 -6.15735 -4.17033 0.20702 1.11585 1.49549 1.64371 1.86727 2.22439 3.25380 3.27382 3.34835 3.40080 3.55981 3.77224 3.88792 4.18231 4.27147 4.37296 4.51519 4.54873 4.67700 4.79812 4.80936 4.89673 4.99605 5.01973 5.13340 5.18492 5.22644 5.43655 5.46766 5.52684 5.81964 5.86832 5.88992 5.93310 6.06789 6.16042 6.28809 6.34800 6.37095 6.51172 6.55207 6.74997 7.04569 7.05598 7.19725 7.46020 7.59202 7.82725 8.35914 8.84572 9.44492 10.96704 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.001617 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.260249 B =17313.302076 C =18019.792581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.365 5.365 3 C 0.123 3.877 4 C -0.311 4.311 5 C 0.460 3.540 6 O -0.479 6.479 7 C -0.235 4.235 8 C -0.003 4.003 9 C -0.051 4.051 10 C -0.146 4.146 11 C -0.083 4.083 12 C -0.195 4.195 13 C 0.141 3.859 14 O -0.318 6.318 15 C 0.072 3.928 16 C -0.009 4.009 17 C -0.528 4.528 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.134 4.134 26 C 0.094 3.906 27 N -0.301 5.301 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.266 0.734 42 H 0.134 0.866 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.065 -5.109 0.096 35.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.144 5.144 3 C -0.028 4.028 4 C -0.324 4.324 5 C 0.343 3.657 6 O -0.359 6.359 7 C -0.254 4.254 8 C -0.022 4.022 9 C -0.051 4.051 10 C -0.164 4.164 11 C -0.101 4.101 12 C -0.214 4.214 13 C 0.094 3.906 14 O -0.232 6.232 15 C -0.002 4.002 16 C -0.046 4.046 17 C -0.566 4.566 18 H 0.093 0.907 19 C -0.129 4.129 20 N -0.535 5.535 21 Si 0.707 3.293 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.187 1.187 25 C -0.153 4.153 26 C -0.094 4.094 27 N -0.121 5.121 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.204 0.796 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.152 0.848 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -35.872 -5.268 0.089 36.257 hybrid contribution 0.801 1.197 0.034 1.441 sum -35.070 -4.071 0.123 35.306 Atomic orbital electron populations 1.22023 0.73426 1.05108 1.04017 1.48515 1.07349 1.03959 1.54529 1.23184 0.90531 0.93791 0.95271 1.20892 0.94169 0.94419 1.22907 1.19418 0.87602 0.87267 0.71456 1.90651 1.89434 1.16206 1.39612 1.23282 0.92601 1.01104 1.08383 1.22546 0.90578 1.00405 0.88672 1.18695 0.91821 0.93125 1.01430 1.21197 0.97583 0.93630 1.03973 1.20868 0.91741 0.99726 0.97790 1.21601 1.00421 0.92932 1.06420 1.19032 0.87681 0.89809 0.94099 1.86143 1.13646 1.36175 1.87202 1.23114 0.79346 0.97211 1.00563 1.19588 0.92048 0.95051 0.97955 1.20834 0.88082 0.95187 1.52513 0.90732 1.24924 0.95164 0.98792 0.94046 1.69892 0.97480 1.36059 1.50087 0.86762 0.78019 0.85732 0.78783 1.20044 1.21144 1.18741 1.20630 0.89134 1.00361 1.05133 1.24171 0.95175 0.94012 0.96058 1.77225 1.02105 1.07732 1.25053 0.90108 0.88951 0.88733 0.79557 0.84974 0.84786 0.85645 0.85584 0.84776 0.92423 0.92392 0.95368 0.95799 0.92419 0.84826 0.78931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.44 59.85 0.68 0.91 16 2 N -0.37 -2.49 3.98 -67.56 -0.27 -2.76 16 3 C 0.12 0.89 11.31 -16.52 -0.19 0.70 16 4 C -0.31 -2.72 6.11 -104.99 -0.64 -3.37 16 5 C 0.46 4.72 7.09 -32.52 -0.23 4.49 16 6 O -0.48 -6.23 16.79 5.13 0.09 -6.15 16 7 C -0.24 -2.13 9.08 -37.48 -0.34 -2.47 16 8 C 0.00 -0.04 9.46 -37.13 -0.35 -0.39 16 9 C -0.05 -0.60 5.87 -105.08 -0.62 -1.21 16 10 C -0.15 -1.55 9.41 -39.08 -0.37 -1.92 16 11 C -0.08 -0.95 10.02 -39.67 -0.40 -1.35 16 12 C -0.19 -2.76 9.04 -39.31 -0.36 -3.12 16 13 C 0.14 2.24 6.68 -39.28 -0.26 1.98 16 14 O -0.32 -6.01 10.13 -19.45 -0.20 -6.21 16 15 C 0.07 1.43 4.68 37.16 0.17 1.60 16 16 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 17 C -0.53 -14.70 9.66 -34.44 -0.33 -15.04 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 21 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C -0.13 -1.86 9.73 -38.95 -0.38 -2.24 16 26 C 0.09 0.73 11.48 -16.98 -0.19 0.54 16 27 N -0.30 -2.68 12.50 30.86 0.39 -2.29 16 28 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.13 0.87 5.20 -52.49 -0.27 0.60 16 33 H 0.13 1.41 7.52 -52.49 -0.39 1.02 16 34 H 0.13 0.95 6.16 -52.49 -0.32 0.63 16 35 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.88 6.27 -52.49 -0.33 1.55 16 37 H 0.06 1.10 7.66 -51.93 -0.40 0.71 16 38 H 0.06 1.11 7.66 -51.93 -0.40 0.71 16 39 H 0.03 0.68 7.20 -51.93 -0.37 0.30 16 40 H 0.02 0.57 7.57 -51.93 -0.39 0.17 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.19 0.91 7.40 -52.49 -0.39 0.52 16 LS Contribution 374.05 15.07 5.64 5.64 Total: -1.00 -34.69 374.05 -7.66 -42.35 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -5.39 Total: -1.84 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -4.02 Total: -19.22 kcal Atomic # 7 Polarization: -32.21 SS G_CDS: 0.89 Total: -31.32 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.11 Total: -12.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.69 -7.66 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.142 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds