Wall clock time and date at job start Tue Mar 31 2020 14:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34308 * 125.75536 * 2 1 4 4 C 1.38096 * 107.39982 * 180.16061 * 3 2 1 5 5 C 1.47557 * 126.41801 * 179.83428 * 4 3 2 6 6 O 1.21763 * 120.00055 * 359.71723 * 5 4 3 7 7 C 1.46359 * 119.99932 * 179.97438 * 5 4 3 8 8 C 1.34958 * 119.99977 * 179.72464 * 7 5 4 9 9 C 1.47161 * 120.00030 * 180.02562 * 8 7 5 10 10 C 1.39910 * 120.14405 * 0.02562 * 9 8 7 11 11 C 1.37893 * 119.93209 * 180.02562 * 10 9 8 12 12 C 1.38335 * 120.23546 * 359.97438 * 11 10 9 13 13 C 1.38877 * 120.29588 * 359.97438 * 12 11 10 14 14 O 1.35908 * 119.96852 * 180.02562 * 13 12 11 15 15 C 1.42899 * 116.99997 * 359.97438 * 14 13 12 16 16 C 1.52999 * 109.47260 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.47377 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99854 * 359.97438 * 17 16 15 19 19 C 1.37869 * 119.99922 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99932 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00266 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47233 * 89.99875 * 21 19 17 23 23 H 1.48506 * 109.46930 * 210.00059 * 21 19 17 24 24 H 1.48502 * 109.47138 * 330.00027 * 21 19 17 25 25 C 1.38409 * 120.05864 * 359.76232 * 13 12 11 26 26 C 1.41285 * 107.16644 * 359.57642 * 4 3 2 27 27 N 1.30447 * 108.03441 * 0.26337 * 26 4 3 28 28 H 1.09000 * 109.46829 * 270.28783 * 1 2 3 29 29 H 1.08995 * 109.47177 * 30.28776 * 1 2 3 30 30 H 1.09005 * 109.46972 * 150.29011 * 1 2 3 31 31 H 1.08001 * 126.30347 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00300 * 359.73193 * 7 5 4 33 33 H 1.07992 * 119.99716 * 0.02562 * 8 7 5 34 34 H 1.07993 * 120.03415 * 359.97438 * 10 9 8 35 35 H 1.07994 * 119.88067 * 180.02562 * 11 10 9 36 36 H 1.07993 * 119.85272 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47524 * 300.00682 * 15 14 13 38 38 H 1.09003 * 109.46972 * 60.00315 * 15 14 13 39 39 H 1.09001 * 109.47282 * 300.00674 * 16 15 14 40 40 H 1.08997 * 109.46763 * 60.00555 * 16 15 14 41 41 H 0.97003 * 120.00238 * 179.97438 * 20 19 17 42 42 H 1.07999 * 120.11180 * 180.26187 * 25 13 12 43 43 H 1.08000 * 125.98438 * 180.26087 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2499 1.0899 0.0000 4 6 3.5606 0.6551 -0.0037 5 6 4.7659 1.5062 -0.0085 6 8 4.6550 2.7187 -0.0147 7 6 6.0948 0.8929 -0.0115 8 6 7.1972 1.6713 -0.0215 9 6 8.5334 1.0546 -0.0250 10 6 8.6644 -0.3383 -0.0186 11 6 9.9185 -0.9115 -0.0215 12 6 11.0489 -0.1140 -0.0312 13 6 10.9300 1.2696 -0.0387 14 8 12.0450 2.0467 -0.0487 15 6 13.3053 1.3731 -0.0504 16 6 14.4350 2.4048 -0.0615 17 6 15.7641 1.6945 -0.0639 18 1 15.7995 0.6150 -0.0578 19 6 16.9349 2.4225 -0.0730 20 7 18.0948 1.8026 -0.0746 21 14 16.8737 4.2895 -0.0829 22 1 16.8635 4.7919 1.3145 23 1 18.0664 4.8201 -0.7911 24 1 15.6426 4.7408 -0.7801 25 6 9.6772 1.8578 -0.0414 26 6 3.5313 -0.7575 0.0040 27 7 2.2828 -1.1355 0.0061 28 1 -0.3633 0.0052 1.0277 29 1 -0.3633 0.8873 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9172 2.1174 -0.0004 32 1 6.1933 -0.1826 -0.0058 33 1 7.0988 2.7467 -0.0268 34 1 7.7842 -0.9639 -0.0106 35 1 10.0187 -1.9868 -0.0170 36 1 12.0281 -0.5695 -0.0329 37 1 13.3877 0.7541 0.8429 38 1 13.3793 0.7432 -0.9369 39 1 14.3528 3.0242 -0.9547 40 1 14.3608 3.0343 0.8252 41 1 18.9185 2.3148 -0.0814 42 1 9.5838 2.9337 -0.0515 43 1 4.3919 -1.4100 0.0076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102598831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:26 Heat of formation + Delta-G solvation = 19.263484 kcal Electronic energy + Delta-G solvation = -24564.176015 eV Core-core repulsion = 20769.062527 eV Total energy + Delta-G solvation = -3795.113487 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.28761 -41.08111 -39.92226 -38.66057 -35.48066 -34.77589 -34.30771 -32.94208 -31.68593 -31.25699 -30.15031 -28.21698 -27.18429 -25.54218 -23.64131 -23.56308 -22.52362 -21.95492 -21.17234 -19.97664 -19.17773 -18.65557 -18.12032 -17.02877 -16.99248 -16.92176 -16.56801 -16.38910 -16.29010 -15.82280 -15.41382 -15.20287 -14.94606 -14.85055 -14.49989 -14.36135 -14.26381 -13.85202 -13.51376 -13.46025 -13.40864 -13.35274 -13.02780 -12.66538 -12.41603 -12.23011 -12.02277 -11.91669 -11.75802 -11.67133 -11.42392 -11.11780 -10.81877 -10.79253 -10.58902 -9.74883 -9.45396 -9.04967 -8.35344 -6.42025 -0.62797 0.43051 0.50652 0.97165 1.35734 1.37320 1.48611 1.48836 1.49783 2.29183 2.32774 2.52030 2.92793 2.99910 3.08594 3.67589 3.82270 3.86012 3.94477 4.01961 4.17597 4.19124 4.22559 4.27110 4.33006 4.38063 4.41474 4.52916 4.58024 4.59400 4.66927 4.69742 4.80146 4.97544 5.08701 5.14858 5.29738 5.32686 5.39671 5.47478 5.51323 5.53563 5.65902 5.84258 5.86029 6.15682 6.49935 6.51770 6.63736 6.72451 7.23449 8.80262 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.001617 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.260249 B =17313.302076 C =18019.792581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.364 5.364 3 C 0.127 3.873 4 C -0.337 4.337 5 C 0.460 3.540 6 O -0.515 6.515 7 C -0.213 4.213 8 C -0.021 4.021 9 C -0.044 4.044 10 C -0.134 4.134 11 C -0.079 4.079 12 C -0.210 4.210 13 C 0.105 3.895 14 O -0.337 6.337 15 C 0.087 3.913 16 C -0.007 4.007 17 C -0.537 4.537 18 H 0.044 0.956 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.947 3.053 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.252 1.252 25 C -0.148 4.148 26 C 0.097 3.903 27 N -0.332 5.332 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.207 0.793 32 H 0.164 0.836 33 H 0.125 0.875 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.027 0.973 40 H 0.026 0.974 41 H 0.270 0.730 42 H 0.133 0.867 43 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.270 -5.597 0.123 38.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.141 5.141 3 C -0.026 4.026 4 C -0.350 4.350 5 C 0.345 3.655 6 O -0.397 6.397 7 C -0.231 4.231 8 C -0.040 4.040 9 C -0.045 4.045 10 C -0.152 4.152 11 C -0.097 4.097 12 C -0.229 4.229 13 C 0.060 3.940 14 O -0.251 6.251 15 C 0.012 3.988 16 C -0.045 4.045 17 C -0.575 4.575 18 H 0.062 0.938 19 C -0.182 4.182 20 N -0.581 5.581 21 Si 0.770 3.230 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.175 1.175 25 C -0.167 4.167 26 C -0.090 4.090 27 N -0.153 5.153 28 H 0.111 0.889 29 H 0.136 0.864 30 H 0.116 0.884 31 H 0.223 0.777 32 H 0.182 0.818 33 H 0.143 0.857 34 H 0.184 0.816 35 H 0.176 0.824 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.079 0.921 42 H 0.151 0.849 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -39.124 -5.789 0.116 39.550 hybrid contribution 1.522 1.218 0.030 1.950 sum -37.602 -4.571 0.146 37.879 Atomic orbital electron populations 1.22391 0.71173 1.06586 1.05305 1.48867 1.08669 1.03322 1.53282 1.23566 0.90424 0.94768 0.93835 1.20892 0.94176 0.94859 1.25028 1.19713 0.88577 0.86902 0.70337 1.90643 1.89904 1.17701 1.41501 1.23524 0.91479 1.02440 1.05630 1.22423 0.90425 1.00315 0.90792 1.18840 0.91518 0.93751 1.00354 1.21665 0.98710 0.93320 1.01473 1.21239 0.91042 1.01091 0.96290 1.21705 1.01401 0.92472 1.07315 1.19309 0.87124 0.90638 0.96938 1.86043 1.13803 1.36862 1.88441 1.22682 0.79487 0.95803 1.00816 1.19449 0.91641 0.95608 0.97765 1.21120 0.90266 0.94191 1.51948 0.93798 1.25841 0.94676 1.04095 0.93638 1.70022 0.98353 1.38196 1.51554 0.85708 0.78564 0.79358 0.79376 1.19008 1.20425 1.17538 1.20767 0.89204 1.00842 1.05878 1.24611 0.95737 0.93863 0.94835 1.77185 1.02807 1.09068 1.26190 0.88897 0.86422 0.88387 0.77657 0.81846 0.85673 0.81648 0.82444 0.85437 0.92221 0.92235 0.95504 0.95593 0.92097 0.84918 0.76316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.44 127.77 1.46 1.66 16 2 N -0.36 -4.15 3.98 -367.67 -1.46 -5.62 16 3 C 0.13 1.57 11.31 84.28 0.95 2.52 16 4 C -0.34 -5.18 6.11 -20.10 -0.12 -5.30 16 5 C 0.46 8.63 7.09 26.85 0.19 8.82 16 6 O -0.52 -13.06 16.79 -4.55 -0.08 -13.14 16 7 C -0.21 -3.25 9.08 23.63 0.21 -3.04 16 8 C -0.02 -0.40 9.46 23.86 0.23 -0.18 16 9 C -0.04 -0.97 5.87 -20.16 -0.12 -1.09 16 10 C -0.13 -2.37 9.41 22.59 0.21 -2.15 16 11 C -0.08 -1.59 10.02 22.21 0.22 -1.37 16 12 C -0.21 -5.84 9.04 22.45 0.20 -5.64 16 13 C 0.11 3.39 6.68 22.46 0.15 3.54 16 14 O -0.34 -13.03 10.13 -92.52 -0.94 -13.97 16 15 C 0.09 3.55 4.68 71.98 0.34 3.88 16 16 C -0.01 -0.34 4.41 29.85 0.13 -0.21 16 17 C -0.54 -30.73 9.66 25.60 0.25 -30.49 16 18 H 0.04 2.70 7.99 -2.91 -0.02 2.67 16 19 C 0.02 0.92 5.47 84.65 0.46 1.38 16 20 N -0.94 -58.06 13.96 21.44 0.30 -57.76 16 21 Si 0.95 44.28 27.47 68.60 1.88 46.16 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 24 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 25 C -0.15 -4.11 9.73 22.68 0.22 -3.89 16 26 C 0.10 1.25 11.48 85.65 0.98 2.23 16 27 N -0.33 -5.17 12.50 -56.28 -0.70 -5.87 16 28 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 31 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.16 1.35 5.20 -2.91 -0.02 1.34 16 33 H 0.13 2.62 7.52 -2.91 -0.02 2.60 16 34 H 0.17 1.55 6.16 -2.91 -0.02 1.54 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.13 3.62 6.27 -2.91 -0.02 3.60 16 37 H 0.06 2.36 7.66 -2.39 -0.02 2.34 16 38 H 0.06 2.36 7.66 -2.39 -0.02 2.34 16 39 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 40 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 43 H 0.22 1.21 7.40 -2.91 -0.02 1.19 16 Total: -1.00 -77.38 374.05 5.95 -71.43 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.98 Total: 8.08 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 5.97 Total: -29.32 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -1.87 Total: -69.25 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.01 Total: -27.10 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -77.38 5.95 -71.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102598831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.694 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds