Wall clock time and date at job start Tue Mar 31 2020 14:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00462 * 2 1 4 4 C 1.50696 * 109.47295 * 89.99608 * 3 2 1 5 5 C 1.38674 * 120.41921 * 270.25423 * 4 3 2 6 6 C 1.38635 * 118.41961 * 180.24104 * 5 4 3 7 7 C 1.38228 * 119.16079 * 359.75342 * 6 5 4 8 8 N 1.31852 * 120.76169 * 359.97438 * 7 6 5 9 9 C 1.31880 * 121.73025 * 0.02562 * 8 7 6 10 10 C 1.34779 * 119.99971 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00360 * 180.02562 * 10 2 1 12 12 C 1.50701 * 119.99668 * 0.02562 * 10 2 1 13 13 C 1.50699 * 109.47087 * 179.97438 * 12 10 2 14 14 C 1.38308 * 119.93040 * 269.72904 * 13 12 10 15 15 C 1.38097 * 120.06619 * 179.72601 * 14 13 12 16 16 C 1.38888 * 119.93335 * 0.56479 * 15 14 13 17 17 O 1.35742 * 120.06972 * 179.68376 * 16 15 14 18 18 C 1.34833 * 117.00156 * 174.48787 * 17 16 15 19 19 H 1.08001 * 119.99642 * 5.05519 * 18 17 16 20 20 C 1.38653 * 120.00514 * 185.05692 * 18 17 16 21 21 N 1.31560 * 119.99544 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47153 * 90.00333 * 22 20 18 24 24 H 1.48506 * 109.46944 * 210.00043 * 22 20 18 25 25 H 1.48502 * 109.47099 * 329.99682 * 22 20 18 26 26 C 1.38882 * 119.85754 * 359.70412 * 16 15 14 27 27 C 1.38100 * 119.93182 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46921 * 90.00089 * 1 2 3 29 29 H 1.08995 * 109.47619 * 210.00397 * 1 2 3 30 30 H 1.09004 * 109.46921 * 330.00202 * 1 2 3 31 31 H 1.08999 * 109.46532 * 329.99667 * 3 2 1 32 32 H 1.08993 * 109.47148 * 209.99887 * 3 2 1 33 33 H 1.08002 * 120.79066 * 359.97201 * 5 4 3 34 34 H 1.08001 * 120.41919 * 179.72730 * 6 5 4 35 35 H 1.07997 * 119.61885 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.62076 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47275 * 299.99767 * 12 10 2 38 38 H 1.08997 * 109.47469 * 59.99669 * 12 10 2 39 39 H 1.07992 * 119.96506 * 359.97438 * 14 13 12 40 40 H 1.08000 * 120.03661 * 180.27335 * 15 14 13 41 41 H 0.96998 * 119.99412 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.02921 * 179.97438 * 26 16 15 43 43 H 1.08005 * 119.96355 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 1.5276 2.5002 2.0844 6 6 1.8029 2.8804 3.3889 7 6 2.9755 2.4518 3.9822 8 7 3.8261 1.6904 3.3223 9 6 3.5970 1.3095 2.0807 10 6 2.1389 -1.1672 0.0005 11 8 3.3516 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 6 2.3645 -3.6178 0.0005 14 6 2.8086 -4.1460 -1.1981 15 6 3.7102 -5.1920 -1.2014 16 6 4.1621 -5.7213 0.0006 17 8 5.0435 -6.7536 0.0005 18 6 5.5288 -7.1443 1.1963 19 1 5.1526 -6.6962 2.1042 20 6 6.5107 -8.1211 1.2605 21 7 6.9685 -8.6672 0.1546 22 14 7.1824 -8.6627 2.9173 23 1 6.3720 -9.7948 3.4338 24 1 8.5944 -9.0954 2.7614 25 1 7.1149 -7.5286 3.8735 26 6 3.7100 -5.1922 1.2024 27 6 2.8126 -4.1426 1.1991 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 0.6195 2.8203 1.5952 34 1 1.1101 3.5039 3.9345 35 1 3.1972 2.7432 4.9982 36 1 4.3175 0.6859 1.5721 37 1 0.7583 -2.5298 0.8903 38 1 0.7589 -2.5302 -0.8896 39 1 2.4529 -3.7374 -2.1323 40 1 4.0601 -5.6012 -2.1376 41 1 7.6557 -9.3503 0.1996 42 1 4.0592 -5.6019 2.1387 43 1 2.4603 -3.7310 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110604388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:50 Heat of formation + Delta-G solvation = 5.008494 kcal Electronic energy + Delta-G solvation = -26270.751382 eV Core-core repulsion = 22475.019752 eV Total energy + Delta-G solvation = -3795.731630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64456 -39.71387 -38.76712 -36.59364 -35.73811 -33.13728 -32.41390 -32.04509 -31.08917 -30.09356 -27.93409 -26.99233 -25.70142 -24.85502 -23.75960 -22.46618 -21.91471 -20.72866 -19.15716 -17.92541 -17.38197 -17.13446 -16.94445 -16.39619 -16.16867 -16.11230 -15.09992 -14.56512 -14.45861 -14.30711 -13.94420 -13.64846 -13.59607 -13.42134 -13.38377 -13.25566 -13.17491 -12.80327 -12.65359 -12.47393 -12.29170 -11.87260 -11.77351 -11.46420 -11.21508 -10.79486 -10.70523 -10.56134 -10.38163 -10.15702 -9.79945 -9.65027 -9.26909 -9.23094 -8.84850 -8.76645 -8.09348 -7.10648 -6.39495 -3.97881 0.81557 1.02445 2.30073 2.31460 2.71685 2.95231 3.16943 3.18656 3.23344 3.66153 4.02097 4.22931 4.38447 4.52236 4.58498 4.66459 4.73842 4.76846 4.91449 5.06269 5.08015 5.13739 5.23382 5.29266 5.34644 5.34740 5.41145 5.49702 5.60901 5.69315 5.77874 5.81179 5.90125 5.98068 6.26291 6.28300 6.47436 6.48462 6.75616 6.96684 7.10631 7.23895 7.30468 7.42868 7.50760 7.79545 7.89570 8.06052 8.24450 9.06442 9.77089 10.78736 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002696 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.633425 B =10382.645158 C =11714.652586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.160 3.840 4 C -0.159 4.159 5 C -0.066 4.066 6 C -0.180 4.180 7 C 0.098 3.902 8 N -0.485 5.485 9 C 0.126 3.874 10 C 0.511 3.489 11 O -0.513 6.513 12 C -0.077 4.077 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.154 0.846 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.486 22.531 2.133 28.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C 0.036 3.964 4 C -0.162 4.162 5 C -0.092 4.092 6 C -0.200 4.200 7 C -0.059 4.059 8 N -0.193 5.193 9 C -0.032 4.032 10 C 0.300 3.700 11 O -0.387 6.387 12 C -0.117 4.117 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.171 0.829 36 H 0.179 0.821 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.768 21.907 2.287 26.519 hybrid contribution -0.632 0.166 0.604 0.890 sum -15.400 22.073 2.891 27.069 Atomic orbital electron populations 1.21792 0.79585 1.03196 1.01848 1.48023 1.06812 1.05472 1.75648 1.20201 0.99054 0.85452 0.91666 1.21315 0.96439 0.99671 0.98772 1.21466 0.98158 0.95230 0.94375 1.22117 0.99260 1.02463 0.96142 1.22853 0.90188 0.93103 0.99781 1.67793 1.31825 1.10881 1.08769 1.22983 0.95413 0.94781 0.89990 1.21136 0.88491 0.85055 0.75352 1.90726 1.13873 1.86900 1.47185 1.20432 0.97487 0.90175 1.03566 1.18634 1.04808 1.00053 0.93713 1.20381 0.95986 0.95134 0.96245 1.20151 1.03774 1.00945 0.96191 1.19379 0.89635 0.87402 0.93262 1.83973 1.50543 1.40707 1.32952 1.21329 1.20561 1.21635 0.83131 0.89100 1.25280 0.95858 0.96149 0.99244 1.70044 1.27426 1.25481 1.26951 0.85721 0.78366 0.79176 0.80241 1.19921 1.20260 1.19164 1.21101 1.03898 1.01682 0.98407 1.20492 0.95778 0.95036 0.96109 0.92380 0.90700 0.91496 0.89669 0.88560 0.85124 0.84895 0.82894 0.82074 0.89189 0.89006 0.87433 0.86564 0.92082 0.85626 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.24 59.84 0.61 1.07 16 2 N -0.62 -6.06 2.86 -182.96 -0.52 -6.58 16 3 C 0.16 1.42 5.56 -5.19 -0.03 1.39 16 4 C -0.16 -1.58 5.48 -104.48 -0.57 -2.15 16 5 C -0.07 -0.51 9.86 -39.27 -0.39 -0.89 16 6 C -0.18 -1.39 10.11 -39.44 -0.40 -1.79 16 7 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 8 N -0.48 -6.40 10.36 -13.25 -0.14 -6.53 16 9 C 0.13 1.61 10.86 -17.55 -0.19 1.42 16 10 C 0.51 6.98 7.67 -10.98 -0.08 6.89 16 11 O -0.51 -9.29 15.17 5.56 0.08 -9.20 16 12 C -0.08 -0.97 4.38 -29.04 -0.13 -1.10 16 13 C -0.17 -3.01 4.38 -104.57 -0.46 -3.47 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 15 C -0.19 -4.24 9.99 -39.39 -0.39 -4.63 16 16 C 0.16 3.97 6.65 -39.10 -0.26 3.71 16 17 O -0.18 -5.27 9.76 0.07 0.00 -5.26 16 18 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.96 13.67 55.48 0.76 -25.20 16 22 Si 0.94 21.17 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 30 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 31 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 32 H 0.10 1.01 7.37 -51.93 -0.38 0.63 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 35 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.16 2.30 7.61 -52.48 -0.40 1.90 16 37 H 0.09 0.96 7.34 -51.93 -0.38 0.58 16 38 H 0.09 0.92 8.05 -51.93 -0.42 0.51 16 39 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 41 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 43 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -36.02 371.14 -8.08 -44.10 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.42 Total: 4.34 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: -3.42 Total: -17.39 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.10 Total: -38.31 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.47 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.02 -8.08 -44.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110604388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.104 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds