Wall clock time and date at job start Tue Mar 31 2020 14:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00462 * 2 1 4 4 C 1.50696 * 109.47295 * 89.99608 * 3 2 1 5 5 C 1.38674 * 120.41921 * 270.25423 * 4 3 2 6 6 C 1.38635 * 118.41961 * 180.24104 * 5 4 3 7 7 C 1.38228 * 119.16079 * 359.75342 * 6 5 4 8 8 N 1.31852 * 120.76169 * 359.97438 * 7 6 5 9 9 C 1.31880 * 121.73025 * 0.02562 * 8 7 6 10 10 C 1.34779 * 119.99971 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00360 * 180.02562 * 10 2 1 12 12 C 1.50701 * 119.99668 * 0.02562 * 10 2 1 13 13 C 1.50699 * 109.47087 * 179.97438 * 12 10 2 14 14 C 1.38308 * 119.93040 * 269.72904 * 13 12 10 15 15 C 1.38097 * 120.06619 * 179.72601 * 14 13 12 16 16 C 1.38888 * 119.93335 * 0.56479 * 15 14 13 17 17 O 1.35742 * 120.06972 * 179.68376 * 16 15 14 18 18 C 1.34833 * 117.00156 * 174.48787 * 17 16 15 19 19 H 1.08001 * 119.99642 * 5.05519 * 18 17 16 20 20 C 1.38653 * 120.00514 * 185.05692 * 18 17 16 21 21 N 1.31560 * 119.99544 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00140 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47153 * 90.00333 * 22 20 18 24 24 H 1.48506 * 109.46944 * 210.00043 * 22 20 18 25 25 H 1.48502 * 109.47099 * 329.99682 * 22 20 18 26 26 C 1.38882 * 119.85754 * 359.70412 * 16 15 14 27 27 C 1.38100 * 119.93182 * 0.02562 * 26 16 15 28 28 H 1.08998 * 109.46921 * 90.00089 * 1 2 3 29 29 H 1.08995 * 109.47619 * 210.00397 * 1 2 3 30 30 H 1.09004 * 109.46921 * 330.00202 * 1 2 3 31 31 H 1.08999 * 109.46532 * 329.99667 * 3 2 1 32 32 H 1.08993 * 109.47148 * 209.99887 * 3 2 1 33 33 H 1.08002 * 120.79066 * 359.97201 * 5 4 3 34 34 H 1.08001 * 120.41919 * 179.72730 * 6 5 4 35 35 H 1.07997 * 119.61885 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.62076 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47275 * 299.99767 * 12 10 2 38 38 H 1.08997 * 109.47469 * 59.99669 * 12 10 2 39 39 H 1.07992 * 119.96506 * 359.97438 * 14 13 12 40 40 H 1.08000 * 120.03661 * 180.27335 * 15 14 13 41 41 H 0.96998 * 119.99412 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.02921 * 179.97438 * 26 16 15 43 43 H 1.08005 * 119.96355 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 6 1.5276 2.5002 2.0844 6 6 1.8029 2.8804 3.3889 7 6 2.9755 2.4518 3.9822 8 7 3.8261 1.6904 3.3223 9 6 3.5970 1.3095 2.0807 10 6 2.1389 -1.1672 0.0005 11 8 3.3516 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 6 2.3645 -3.6178 0.0005 14 6 2.8086 -4.1460 -1.1981 15 6 3.7102 -5.1920 -1.2014 16 6 4.1621 -5.7213 0.0006 17 8 5.0435 -6.7536 0.0005 18 6 5.5288 -7.1443 1.1963 19 1 5.1526 -6.6962 2.1042 20 6 6.5107 -8.1211 1.2605 21 7 6.9685 -8.6672 0.1546 22 14 7.1824 -8.6627 2.9173 23 1 6.3720 -9.7948 3.4338 24 1 8.5944 -9.0954 2.7614 25 1 7.1149 -7.5286 3.8735 26 6 3.7100 -5.1922 1.2024 27 6 2.8126 -4.1426 1.1991 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6085 2.0283 -0.5139 32 1 3.1499 1.1383 -0.5138 33 1 0.6195 2.8203 1.5952 34 1 1.1101 3.5039 3.9345 35 1 3.1972 2.7432 4.9982 36 1 4.3175 0.6859 1.5721 37 1 0.7583 -2.5298 0.8903 38 1 0.7589 -2.5302 -0.8896 39 1 2.4529 -3.7374 -2.1323 40 1 4.0601 -5.6012 -2.1376 41 1 7.6557 -9.3503 0.1996 42 1 4.0592 -5.6019 2.1387 43 1 2.4603 -3.7310 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110604388.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:50 Heat of formation + Delta-G solvation = -18.880253 kcal Electronic energy + Delta-G solvation = -26271.787275 eV Core-core repulsion = 22475.019752 eV Total energy + Delta-G solvation = -3796.767524 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48045 -40.90084 -40.29762 -38.27336 -36.70175 -34.43872 -33.88605 -32.96542 -32.32272 -31.78738 -28.85824 -28.03758 -27.27261 -26.17354 -24.47910 -23.65178 -23.31789 -22.22683 -20.14970 -19.83199 -18.84101 -18.14633 -17.94972 -17.29848 -16.98676 -16.95762 -16.40018 -16.32544 -15.87430 -15.61952 -15.51840 -15.05222 -14.84469 -14.46142 -14.37872 -14.32501 -14.10770 -14.00212 -13.72742 -13.60154 -13.31011 -12.98371 -12.94288 -12.77120 -12.55291 -12.44812 -12.28488 -12.19966 -12.13123 -11.19597 -10.99777 -10.81491 -10.67743 -10.43334 -10.00242 -9.77744 -9.61418 -8.90446 -8.48827 -6.16895 0.09068 0.34796 0.60134 0.67093 1.32155 1.41841 1.50237 1.72740 2.14536 2.16785 2.81201 2.92072 3.15172 3.51382 3.52555 3.74800 3.85408 3.88656 4.02656 4.03867 4.07749 4.13321 4.18421 4.37823 4.46996 4.49439 4.58278 4.61091 4.67446 4.77194 4.80712 4.86106 4.88044 5.03508 5.08705 5.13373 5.18705 5.27828 5.29660 5.54290 5.59554 5.70500 5.76911 5.79336 6.01637 6.20810 6.43851 6.95803 7.03923 7.29526 7.76978 8.74719 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.002696 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.633425 B =10382.645158 C =11714.652586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.613 5.613 3 C 0.159 3.841 4 C -0.158 4.158 5 C -0.056 4.056 6 C -0.167 4.167 7 C 0.079 3.921 8 N -0.528 5.528 9 C 0.091 3.909 10 C 0.506 3.494 11 O -0.574 6.574 12 C -0.075 4.075 13 C -0.144 4.144 14 C -0.056 4.056 15 C -0.205 4.205 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.415 4.415 19 H 0.098 0.902 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.257 1.257 26 C -0.244 4.244 27 C -0.062 4.062 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.127 0.873 32 H 0.068 0.932 33 H 0.174 0.826 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.132 0.868 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.273 0.727 42 H 0.114 0.886 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.170 26.153 3.065 33.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C 0.036 3.964 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.186 4.186 7 C -0.078 4.078 8 N -0.237 5.237 9 C -0.065 4.065 10 C 0.295 3.705 11 O -0.452 6.452 12 C -0.114 4.114 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.224 4.224 16 C 0.062 3.938 17 O -0.139 6.139 18 C -0.491 4.491 19 H 0.115 0.885 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.264 4.264 27 C -0.080 4.080 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.192 0.808 34 H 0.189 0.811 35 H 0.189 0.811 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.167 0.833 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.549 25.597 3.207 32.367 hybrid contribution 0.522 -0.579 0.255 0.820 sum -19.026 25.018 3.462 31.621 Atomic orbital electron populations 1.22176 0.76451 1.04998 1.03797 1.48020 1.08625 1.04425 1.73524 1.20310 0.98769 0.86014 0.91285 1.21350 0.95792 0.99906 0.99044 1.21923 0.98655 0.93476 0.94214 1.22544 0.98478 1.01317 0.96274 1.23319 0.90901 0.92890 1.00674 1.67658 1.33944 1.12695 1.09410 1.22681 0.96737 0.96460 0.90650 1.21237 0.87780 0.86460 0.75023 1.90740 1.16385 1.87805 1.50312 1.20555 0.96460 0.87325 1.07090 1.19267 1.03105 0.99735 0.92362 1.20869 0.94389 0.93440 0.98653 1.20457 1.04693 1.02038 0.95210 1.19928 0.90422 0.88107 0.95333 1.83932 1.53149 1.43418 1.33449 1.21798 1.21357 1.22342 0.83591 0.88497 1.26595 0.95763 0.95830 1.03841 1.70186 1.28934 1.27009 1.29785 0.84594 0.77819 0.79112 0.74708 1.18342 1.19361 1.18124 1.21200 1.05005 1.02915 0.97233 1.20869 0.94831 0.93872 0.98441 0.90297 0.89821 0.88968 0.85473 0.91313 0.80814 0.81073 0.81069 0.85645 0.86080 0.85038 0.83341 0.86841 0.91787 0.86784 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.24 127.77 1.31 1.66 16 2 N -0.61 -9.44 2.86 -851.16 -2.43 -11.87 16 3 C 0.16 2.39 5.56 85.63 0.48 2.87 16 4 C -0.16 -2.79 5.48 -19.77 -0.11 -2.90 16 5 C -0.06 -0.60 9.86 22.47 0.22 -0.38 16 6 C -0.17 -1.87 10.11 22.36 0.23 -1.65 16 7 C 0.08 1.43 11.18 84.69 0.95 2.38 16 8 N -0.53 -14.28 10.36 -195.84 -2.03 -16.31 16 9 C 0.09 2.43 10.86 84.67 0.92 3.35 16 10 C 0.51 12.44 7.67 87.66 0.67 13.11 16 11 O -0.57 -20.79 15.17 -3.02 -0.05 -20.83 16 12 C -0.08 -1.55 4.38 29.10 0.13 -1.43 16 13 C -0.14 -4.74 4.38 -19.83 -0.09 -4.83 16 14 C -0.06 -2.00 9.69 22.25 0.22 -1.78 16 15 C -0.20 -9.41 9.99 22.39 0.22 -9.18 16 16 C 0.11 6.04 6.65 22.58 0.15 6.19 16 17 O -0.23 -14.87 9.76 -22.68 -0.22 -15.09 16 18 C -0.41 -25.64 9.49 67.92 0.64 -24.99 16 19 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 20 C -0.02 -1.37 5.49 84.83 0.47 -0.91 16 21 N -0.92 -58.79 13.67 21.61 0.30 -58.49 16 22 Si 1.02 45.20 29.55 68.60 2.03 47.22 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 26 C -0.24 -11.72 9.17 22.39 0.21 -11.51 16 27 C -0.06 -2.38 9.69 22.25 0.22 -2.16 16 28 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.08 0.35 6.44 -2.39 -0.02 0.33 16 30 H 0.09 0.09 8.07 -2.38 -0.02 0.07 16 31 H 0.13 0.84 8.03 -2.39 -0.02 0.82 16 32 H 0.07 1.44 7.37 -2.39 -0.02 1.42 16 33 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.13 4.07 7.61 -2.91 -0.02 4.05 16 37 H 0.12 1.86 7.34 -2.39 -0.02 1.84 16 38 H 0.13 1.78 8.05 -2.39 -0.02 1.77 16 39 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.11 5.59 5.64 -2.91 -0.02 5.58 16 43 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -90.66 371.14 5.45 -85.22 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 1.03 Total: 22.33 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 6.82 Total: -32.16 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -4.17 Total: -86.67 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.27 Total: -35.93 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -90.66 5.45 -85.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110604388.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.335 kcal (2) G-P(sol) polarization free energy of solvation -90.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds