Wall clock time and date at job start Tue Mar 31 2020 14:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99739 * 2 1 4 4 C 1.50697 * 109.46931 * 90.00443 * 3 2 1 5 5 C 1.38653 * 120.78858 * 269.71450 * 4 3 2 6 6 C 1.38203 * 119.16223 * 179.80184 * 5 4 3 7 7 N 1.31875 * 120.76336 * 0.48328 * 6 5 4 8 8 C 1.31869 * 121.72342 * 359.74845 * 7 6 5 9 9 C 1.38200 * 120.76852 * 0.02562 * 8 7 6 10 10 C 1.34768 * 120.00308 * 180.02562 * 2 1 3 11 11 O 1.21280 * 120.00470 * 179.97438 * 10 2 1 12 12 C 1.50705 * 120.00016 * 359.97438 * 10 2 1 13 13 C 1.50702 * 109.47305 * 180.02562 * 12 10 2 14 14 C 1.38301 * 119.93189 * 269.72882 * 13 12 10 15 15 C 1.38098 * 120.06934 * 179.72559 * 14 13 12 16 16 C 1.38888 * 119.92493 * 0.57067 * 15 14 13 17 17 O 1.35753 * 120.06354 * 179.68203 * 16 15 14 18 18 C 1.34825 * 116.99839 * 174.48732 * 17 16 15 19 19 H 1.08004 * 119.99988 * 5.05276 * 18 17 16 20 20 C 1.38657 * 120.00001 * 185.05754 * 18 17 16 21 21 N 1.31553 * 120.00254 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46924 * 90.00007 * 22 20 18 24 24 H 1.48504 * 109.47103 * 209.99741 * 22 20 18 25 25 H 1.48499 * 109.47151 * 330.00082 * 22 20 18 26 26 C 1.38878 * 119.86486 * 359.70414 * 16 15 14 27 27 C 1.38101 * 119.92928 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47381 * 89.99742 * 1 2 3 29 29 H 1.09000 * 109.46626 * 209.99922 * 1 2 3 30 30 H 1.08997 * 109.46696 * 329.99888 * 1 2 3 31 31 H 1.09004 * 109.46848 * 210.00324 * 3 2 1 32 32 H 1.09002 * 109.47459 * 330.00345 * 3 2 1 33 33 H 1.07997 * 120.41927 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.61863 * 180.21014 * 6 5 4 35 35 H 1.07999 * 119.61482 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.42122 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47294 * 300.00951 * 12 10 2 38 38 H 1.09005 * 109.46685 * 60.00204 * 12 10 2 39 39 H 1.08000 * 119.96277 * 359.97438 * 14 13 12 40 40 H 1.07995 * 120.03545 * 180.27260 * 15 14 13 41 41 H 0.97000 * 120.00191 * 180.02562 * 21 20 18 42 42 H 1.07992 * 120.03296 * 179.97438 * 26 16 15 43 43 H 1.08004 * 119.96102 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 6 1.5383 2.5089 2.0881 6 6 1.8005 2.8845 3.3920 7 7 2.9050 2.4938 3.9973 8 6 3.7950 1.7319 3.3922 9 6 3.5986 1.3132 2.0899 10 6 2.1389 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 6 2.3648 -3.6177 -0.0005 14 6 2.8090 -4.1459 -1.1990 15 6 3.7107 -5.1918 -1.2024 16 6 4.1625 -5.7210 -0.0004 17 8 5.0440 -6.7534 -0.0004 18 6 5.5291 -7.1440 1.1954 19 1 5.1529 -6.6960 2.1032 20 6 6.5111 -8.1208 1.2596 21 7 6.9691 -8.6668 0.1538 22 14 7.1838 -8.6614 2.9163 23 1 6.3736 -9.7931 3.4340 24 1 8.5957 -9.0942 2.7600 25 1 7.1167 -7.5267 3.8720 26 6 3.7102 -5.1921 1.2015 27 6 2.8135 -4.1418 1.1981 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 3.1499 1.1385 -0.5139 32 1 1.6084 2.0285 -0.5138 33 1 0.6339 2.8355 1.5963 34 1 1.0947 3.5087 3.9198 35 1 4.6882 1.4322 3.9202 36 1 4.3314 0.6896 1.5995 37 1 0.7591 -2.5302 0.8896 38 1 0.7585 -2.5298 -0.8904 39 1 2.4533 -3.7373 -2.1334 40 1 4.0605 -5.6009 -2.1386 41 1 7.6558 -9.3504 0.1988 42 1 4.0594 -5.6018 2.1377 43 1 2.4612 -3.7304 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110615716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:28 Heat of formation + Delta-G solvation = 4.517785 kcal Electronic energy + Delta-G solvation = -26260.867202 eV Core-core repulsion = 22465.114293 eV Total energy + Delta-G solvation = -3795.752909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63723 -39.74514 -38.79970 -36.63395 -35.79958 -33.36011 -32.39456 -31.42052 -31.26249 -30.12400 -28.25030 -27.01817 -25.79768 -24.90966 -23.64461 -22.45385 -21.94258 -20.76594 -19.21482 -17.95190 -17.25381 -17.06920 -16.96596 -16.37832 -16.13961 -15.86390 -15.48258 -14.58945 -14.51855 -14.32864 -13.98384 -13.90102 -13.63478 -13.57163 -13.39186 -13.22051 -12.98589 -12.78638 -12.68348 -12.53351 -12.34978 -11.83094 -11.61413 -11.49380 -11.24045 -10.82102 -10.73279 -10.58779 -10.40557 -10.13876 -9.79612 -9.60063 -9.36217 -9.29598 -8.89173 -8.79229 -8.12319 -7.13546 -6.41871 -4.00388 0.89718 0.95513 2.27294 2.28554 2.67982 2.93035 3.14996 3.16452 3.21103 3.65604 3.99686 4.24213 4.33581 4.37349 4.54115 4.74922 4.78629 4.86401 4.94506 5.05005 5.07854 5.11393 5.24266 5.29146 5.31992 5.37307 5.38409 5.46420 5.60609 5.66836 5.74220 5.75162 5.87326 6.10007 6.22941 6.25009 6.44620 6.48669 6.72765 6.93804 7.07806 7.20428 7.27626 7.39886 7.47986 7.74741 7.86706 8.03458 8.20557 9.03947 9.74500 10.76294 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002688 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.510389 B =10415.336900 C =11752.854803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.623 5.623 3 C 0.153 3.847 4 C -0.062 4.062 5 C -0.164 4.164 6 C 0.091 3.909 7 N -0.486 5.486 8 C 0.097 3.903 9 C -0.146 4.146 10 C 0.511 3.489 11 O -0.514 6.514 12 C -0.077 4.077 13 C -0.171 4.171 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.126 0.874 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 21.267 1.134 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.359 5.359 3 C 0.031 3.969 4 C -0.071 4.071 5 C -0.184 4.184 6 C -0.066 4.066 7 N -0.195 5.195 8 C -0.060 4.060 9 C -0.166 4.166 10 C 0.300 3.700 11 O -0.387 6.387 12 C -0.117 4.117 13 C -0.172 4.172 14 C -0.077 4.077 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.251 4.251 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.174 0.826 36 H 0.160 0.840 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.144 0.856 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.999 21.177 1.727 25.445 hybrid contribution 0.050 -0.433 0.080 0.443 sum -13.949 20.745 1.807 25.063 Atomic orbital electron populations 1.21814 0.79429 1.03329 1.01910 1.47983 1.06876 1.05335 1.75670 1.20308 0.99200 0.85674 0.91759 1.20718 0.93985 0.95121 0.97303 1.22019 1.00160 0.99808 0.96449 1.22728 0.94347 0.97369 0.92138 1.67677 1.02706 1.11005 1.38105 1.22836 0.97744 0.93185 0.92214 1.22302 0.98398 0.99824 0.96106 1.21146 0.88485 0.85049 0.75304 1.90723 1.13886 1.86895 1.47209 1.20437 0.97493 0.90113 1.03619 1.18632 1.04800 1.00075 0.93722 1.20384 0.95969 0.95136 0.96254 1.20153 1.03765 1.00933 0.96206 1.19381 0.89642 0.87401 0.93261 1.83975 1.50523 1.40697 1.32955 1.21327 1.20568 1.21689 0.83124 0.89100 1.25282 0.95851 0.96138 0.99245 1.70037 1.27424 1.25424 1.26970 0.85722 0.78382 0.79186 0.80212 1.19899 1.20252 1.19181 1.21097 1.03949 1.01668 0.98406 1.20490 0.95783 0.95059 0.96101 0.92340 0.90642 0.91339 0.88509 0.89466 0.85083 0.82935 0.82625 0.83962 0.89140 0.88977 0.87436 0.86555 0.92055 0.85619 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.45 10.24 59.85 0.61 1.06 16 2 N -0.62 -5.97 2.86 -182.95 -0.52 -6.50 16 3 C 0.15 1.35 5.58 -5.19 -0.03 1.32 16 4 C -0.06 -0.60 5.50 -104.32 -0.57 -1.17 16 5 C -0.16 -1.31 9.82 -39.44 -0.39 -1.70 16 6 C 0.09 0.83 11.18 -17.55 -0.20 0.63 16 7 N -0.49 -5.64 10.36 -13.25 -0.14 -5.78 16 8 C 0.10 1.09 11.18 -17.55 -0.20 0.89 16 9 C -0.15 -1.67 9.82 -39.44 -0.39 -2.06 16 10 C 0.51 6.87 7.67 -10.99 -0.08 6.78 16 11 O -0.51 -9.12 15.28 5.56 0.08 -9.04 16 12 C -0.08 -0.96 4.38 -29.03 -0.13 -1.08 16 13 C -0.17 -2.97 4.38 -104.58 -0.46 -3.43 16 14 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 15 C -0.19 -4.19 9.99 -39.39 -0.39 -4.58 16 16 C 0.16 3.92 6.65 -39.10 -0.26 3.66 16 17 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 18 C -0.39 -11.17 9.49 30.89 0.29 -10.87 16 19 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 20 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.73 13.67 55.48 0.76 -24.98 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 C -0.23 -5.24 9.17 -39.39 -0.36 -5.60 16 27 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.40 6.44 -51.93 -0.33 0.07 16 30 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.10 1.01 7.38 -51.93 -0.38 0.63 16 32 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 33 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.14 1.79 7.72 -52.49 -0.41 1.38 16 37 H 0.09 0.94 7.34 -51.93 -0.38 0.56 16 38 H 0.09 0.91 8.05 -51.93 -0.42 0.50 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 43 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -35.47 371.39 -8.08 -43.55 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.42 Total: 4.52 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.41 Total: -18.07 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.10 Total: -37.25 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.09 Total: -14.24 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.47 -8.08 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110615716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.068 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds