Wall clock time and date at job start Tue Mar 31 2020 14:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99739 * 2 1 4 4 C 1.50697 * 109.46931 * 90.00443 * 3 2 1 5 5 C 1.38653 * 120.78858 * 269.71450 * 4 3 2 6 6 C 1.38203 * 119.16223 * 179.80184 * 5 4 3 7 7 N 1.31875 * 120.76336 * 0.48328 * 6 5 4 8 8 C 1.31869 * 121.72342 * 359.74845 * 7 6 5 9 9 C 1.38200 * 120.76852 * 0.02562 * 8 7 6 10 10 C 1.34768 * 120.00308 * 180.02562 * 2 1 3 11 11 O 1.21280 * 120.00470 * 179.97438 * 10 2 1 12 12 C 1.50705 * 120.00016 * 359.97438 * 10 2 1 13 13 C 1.50702 * 109.47305 * 180.02562 * 12 10 2 14 14 C 1.38301 * 119.93189 * 269.72882 * 13 12 10 15 15 C 1.38098 * 120.06934 * 179.72559 * 14 13 12 16 16 C 1.38888 * 119.92493 * 0.57067 * 15 14 13 17 17 O 1.35753 * 120.06354 * 179.68203 * 16 15 14 18 18 C 1.34825 * 116.99839 * 174.48732 * 17 16 15 19 19 H 1.08004 * 119.99988 * 5.05276 * 18 17 16 20 20 C 1.38657 * 120.00001 * 185.05754 * 18 17 16 21 21 N 1.31553 * 120.00254 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99757 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46924 * 90.00007 * 22 20 18 24 24 H 1.48504 * 109.47103 * 209.99741 * 22 20 18 25 25 H 1.48499 * 109.47151 * 330.00082 * 22 20 18 26 26 C 1.38878 * 119.86486 * 359.70414 * 16 15 14 27 27 C 1.38101 * 119.92928 * 359.97438 * 26 16 15 28 28 H 1.08995 * 109.47381 * 89.99742 * 1 2 3 29 29 H 1.09000 * 109.46626 * 209.99922 * 1 2 3 30 30 H 1.08997 * 109.46696 * 329.99888 * 1 2 3 31 31 H 1.09004 * 109.46848 * 210.00324 * 3 2 1 32 32 H 1.09002 * 109.47459 * 330.00345 * 3 2 1 33 33 H 1.07997 * 120.41927 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.61863 * 180.21014 * 6 5 4 35 35 H 1.07999 * 119.61482 * 179.97438 * 8 7 6 36 36 H 1.07993 * 120.42122 * 179.97438 * 9 8 7 37 37 H 1.08997 * 109.47294 * 300.00951 * 12 10 2 38 38 H 1.09005 * 109.46685 * 60.00204 * 12 10 2 39 39 H 1.08000 * 119.96277 * 359.97438 * 14 13 12 40 40 H 1.07995 * 120.03545 * 180.27260 * 15 14 13 41 41 H 0.97000 * 120.00191 * 180.02562 * 21 20 18 42 42 H 1.07992 * 120.03296 * 179.97438 * 26 16 15 43 43 H 1.08004 * 119.96102 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 1.4208 5 6 1.5383 2.5089 2.0881 6 6 1.8005 2.8845 3.3920 7 7 2.9050 2.4938 3.9973 8 6 3.7950 1.7319 3.3922 9 6 3.5986 1.3132 2.0899 10 6 2.1389 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 6 2.3648 -3.6177 -0.0005 14 6 2.8090 -4.1459 -1.1990 15 6 3.7107 -5.1918 -1.2024 16 6 4.1625 -5.7210 -0.0004 17 8 5.0440 -6.7534 -0.0004 18 6 5.5291 -7.1440 1.1954 19 1 5.1529 -6.6960 2.1032 20 6 6.5111 -8.1208 1.2596 21 7 6.9691 -8.6668 0.1538 22 14 7.1838 -8.6614 2.9163 23 1 6.3736 -9.7931 3.4340 24 1 8.5957 -9.0942 2.7600 25 1 7.1167 -7.5267 3.8720 26 6 3.7102 -5.1921 1.2015 27 6 2.8135 -4.1418 1.1981 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5138 31 1 3.1499 1.1385 -0.5139 32 1 1.6084 2.0285 -0.5138 33 1 0.6339 2.8355 1.5963 34 1 1.0947 3.5087 3.9198 35 1 4.6882 1.4322 3.9202 36 1 4.3314 0.6896 1.5995 37 1 0.7591 -2.5302 0.8896 38 1 0.7585 -2.5298 -0.8904 39 1 2.4533 -3.7373 -2.1334 40 1 4.0605 -5.6009 -2.1386 41 1 7.6558 -9.3504 0.1988 42 1 4.0594 -5.6018 2.1377 43 1 2.4612 -3.7304 2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110615716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:27 Heat of formation + Delta-G solvation = -18.415784 kcal Electronic energy + Delta-G solvation = -26261.861676 eV Core-core repulsion = 22465.114293 eV Total energy + Delta-G solvation = -3796.747383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47516 -40.90003 -40.31334 -38.28055 -36.75517 -34.45859 -34.08053 -32.65895 -32.14019 -31.78848 -29.13429 -28.09180 -27.28761 -26.27470 -24.37324 -23.64942 -23.32279 -22.23451 -20.19070 -19.83332 -18.83860 -18.12063 -17.81797 -17.24500 -16.96516 -16.68827 -16.49414 -16.37925 -15.99338 -15.79320 -15.51688 -15.05399 -14.84622 -14.61984 -14.46157 -14.34675 -14.28150 -13.96280 -13.60040 -13.52490 -13.31356 -13.06730 -12.96852 -12.75770 -12.49479 -12.35177 -12.28044 -12.17333 -12.11788 -11.19267 -11.04726 -10.80812 -10.56892 -10.50387 -10.09894 -9.77605 -9.64473 -8.90541 -8.48514 -6.16624 0.17543 0.19838 0.60328 0.67298 1.32655 1.42186 1.50585 1.70945 2.13445 2.16753 2.81452 2.91539 3.15316 3.51670 3.55767 3.68163 3.70229 3.86307 4.02780 4.03349 4.17124 4.18201 4.21315 4.36697 4.43640 4.46556 4.58334 4.62464 4.67217 4.73211 4.78467 4.86023 4.89061 5.02302 5.03897 5.09057 5.13725 5.28985 5.36589 5.53583 5.57688 5.70702 5.76990 5.77417 6.01814 6.20707 6.41729 6.96118 7.00510 7.27224 7.77378 8.74988 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002688 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.510389 B =10415.336900 C =11752.854803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.612 5.612 3 C 0.153 3.847 4 C -0.066 4.066 5 C -0.148 4.148 6 C 0.085 3.915 7 N -0.512 5.512 8 C 0.080 3.920 9 C -0.167 4.167 10 C 0.507 3.493 11 O -0.572 6.572 12 C -0.076 4.076 13 C -0.144 4.144 14 C -0.056 4.056 15 C -0.205 4.205 16 C 0.112 3.888 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.099 0.901 20 C -0.023 4.023 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.244 4.244 27 C -0.061 4.061 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.157 0.843 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.113 0.887 41 H 0.273 0.727 42 H 0.115 0.885 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.370 24.525 1.732 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.346 5.346 3 C 0.031 3.969 4 C -0.076 4.076 5 C -0.167 4.167 6 C -0.072 4.072 7 N -0.222 5.222 8 C -0.076 4.076 9 C -0.187 4.187 10 C 0.296 3.704 11 O -0.450 6.450 12 C -0.115 4.115 13 C -0.145 4.145 14 C -0.074 4.074 15 C -0.224 4.224 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.180 1.180 26 C -0.263 4.263 27 C -0.079 4.079 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.146 0.854 33 H 0.191 0.809 34 H 0.200 0.800 35 H 0.174 0.826 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.149 0.851 39 H 0.166 0.834 40 H 0.131 0.869 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.361 24.502 2.320 30.706 hybrid contribution 1.056 -1.075 -0.204 1.521 sum -17.305 23.427 2.115 29.202 Atomic orbital electron populations 1.22191 0.76401 1.05062 1.03832 1.47981 1.08632 1.04336 1.73618 1.20415 0.98999 0.86223 0.91303 1.20881 0.93625 0.95351 0.97695 1.22376 1.00697 0.97910 0.95756 1.23348 0.93862 0.97031 0.92983 1.67690 1.03820 1.11648 1.39029 1.22891 0.98329 0.93943 0.92436 1.22222 0.99316 1.00698 0.96489 1.21229 0.87792 0.86385 0.74962 1.90734 1.16284 1.87770 1.50253 1.20559 0.96486 0.87323 1.07098 1.19255 1.03088 0.99756 0.92386 1.20864 0.94397 0.93467 0.98658 1.20451 1.04718 1.02049 0.95223 1.19931 0.90415 0.88093 0.95345 1.83935 1.53147 1.43430 1.33468 1.21802 1.21303 1.22346 0.83600 0.88408 1.26594 0.95787 0.95845 1.03810 1.70182 1.28966 1.26985 1.29811 0.84596 0.77776 0.79135 0.74737 1.18443 1.19430 1.17991 1.21200 1.05011 1.02869 0.97215 1.20874 0.94761 0.93845 0.98440 0.90269 0.89738 0.88982 0.91018 0.85432 0.80876 0.79953 0.82561 0.86386 0.86037 0.85116 0.83442 0.86919 0.91801 0.86703 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 10.24 127.77 1.31 1.65 16 2 N -0.61 -9.05 2.86 -851.13 -2.43 -11.48 16 3 C 0.15 2.20 5.58 85.63 0.48 2.67 16 4 C -0.07 -1.12 5.50 -19.67 -0.11 -1.22 16 5 C -0.15 -1.71 9.82 22.36 0.22 -1.49 16 6 C 0.08 1.26 11.18 84.68 0.95 2.21 16 7 N -0.51 -11.29 10.36 -195.84 -2.03 -13.32 16 8 C 0.08 1.82 11.18 84.68 0.95 2.77 16 9 C -0.17 -3.84 9.82 22.36 0.22 -3.62 16 10 C 0.51 11.96 7.67 87.66 0.67 12.63 16 11 O -0.57 -19.86 15.28 -3.03 -0.05 -19.91 16 12 C -0.08 -1.50 4.38 29.10 0.13 -1.38 16 13 C -0.14 -4.61 4.38 -19.83 -0.09 -4.70 16 14 C -0.06 -1.97 9.69 22.25 0.22 -1.75 16 15 C -0.21 -9.27 9.99 22.39 0.22 -9.05 16 16 C 0.11 5.94 6.65 22.58 0.15 6.09 16 17 O -0.23 -14.70 9.76 -22.72 -0.22 -14.93 16 18 C -0.41 -25.25 9.49 67.92 0.64 -24.61 16 19 H 0.10 5.53 5.20 -2.91 -0.02 5.52 16 20 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 21 N -0.92 -58.27 13.67 21.61 0.30 -57.98 16 22 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 26 C -0.24 -11.40 9.17 22.39 0.21 -11.20 16 27 C -0.06 -2.27 9.69 22.25 0.22 -2.05 16 28 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.08 0.33 6.44 -2.39 -0.02 0.31 16 30 H 0.09 0.10 8.07 -2.39 -0.02 0.08 16 31 H 0.07 1.43 7.38 -2.38 -0.02 1.41 16 32 H 0.13 0.81 8.03 -2.39 -0.02 0.79 16 33 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 34 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 36 H 0.12 3.23 7.72 -2.91 -0.02 3.21 16 37 H 0.12 1.78 7.34 -2.39 -0.02 1.76 16 38 H 0.13 1.70 8.05 -2.38 -0.02 1.69 16 39 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.11 5.02 8.06 -2.91 -0.02 5.00 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 43 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -87.30 371.39 5.47 -81.83 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 1.03 Total: 23.16 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 6.84 Total: -33.94 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -4.16 Total: -82.78 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.27 Total: -34.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -87.30 5.47 -81.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110615716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.415 kcal (2) G-P(sol) polarization free energy of solvation -87.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds