Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35831 * 117.00431 * 2 1 4 4 C 1.39879 * 119.72254 * 0.02562 * 3 2 1 5 5 C 1.35918 * 120.98673 * 179.97438 * 4 3 2 6 6 C 1.40761 * 119.95720 * 0.02562 * 5 4 3 7 7 N 1.33565 * 120.83273 * 179.97438 * 6 5 4 8 8 C 1.31029 * 121.89793 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.03784 * 180.02562 * 8 7 6 10 10 C 1.53001 * 117.49505 * 163.74933 * 9 8 7 11 11 C 1.53005 * 117.49732 * 95.09426 * 9 8 7 12 12 C 1.39146 * 121.92349 * 0.02996 * 8 7 6 13 13 C 1.39082 * 119.54986 * 359.97438 * 12 8 7 14 14 C 1.47602 * 121.12318 * 179.97438 * 13 12 8 15 15 O 1.21617 * 119.99930 * 132.48686 * 14 13 12 16 16 N 1.34777 * 120.00319 * 312.47819 * 14 13 12 17 17 C 1.46501 * 119.99591 * 4.79177 * 16 14 13 18 18 C 1.36676 * 120.00327 * 184.78672 * 16 14 13 19 19 H 1.08005 * 119.99734 * 13.53508 * 18 16 14 20 20 C 1.39169 * 120.00283 * 193.53731 * 18 16 14 21 21 N 1.31287 * 119.99887 * 28.82500 * 20 18 16 22 22 Si 1.86799 * 120.00064 * 208.82477 * 20 18 16 23 23 H 1.48500 * 109.46829 * 94.99960 * 22 20 18 24 24 H 1.48505 * 109.46855 * 214.99321 * 22 20 18 25 25 H 1.48494 * 109.47201 * 334.99743 * 22 20 18 26 26 C 1.41715 * 119.19179 * 359.97438 * 6 5 4 27 27 C 1.37792 * 119.72533 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47293 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.46960 * 59.99722 * 1 2 3 30 30 H 1.08999 * 109.47551 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.50659 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.02530 * 180.02562 * 5 4 3 33 33 H 1.08993 * 115.54939 * 309.42132 * 9 8 7 34 34 H 1.09004 * 117.50459 * 0.02562 * 10 9 8 35 35 H 1.09005 * 117.49800 * 145.02327 * 10 9 8 36 36 H 1.08996 * 117.49516 * 214.98157 * 11 9 8 37 37 H 1.09000 * 117.49323 * 359.97369 * 11 9 8 38 38 H 1.07998 * 120.22950 * 179.97438 * 12 8 7 39 39 H 1.09002 * 109.47393 * 87.87051 * 17 16 14 40 40 H 1.08999 * 109.46797 * 207.86497 * 17 16 14 41 41 H 1.08994 * 109.47612 * 327.87040 * 17 16 14 42 42 H 0.96998 * 119.99830 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.24376 * 359.72536 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2783 2.3797 0.0005 5 6 1.8686 3.6040 0.0011 6 6 3.2724 3.7075 0.0005 7 7 3.8708 4.9016 0.0005 8 6 5.1755 5.0223 -0.0004 9 6 5.7826 6.4016 0.0002 10 6 7.2600 6.5229 0.3789 11 6 6.1786 6.9985 1.3522 12 6 6.0169 3.9140 -0.0022 13 6 5.4680 2.6361 -0.0023 14 6 6.3279 1.4364 -0.0047 15 8 6.1052 0.5271 0.7716 16 7 7.3598 1.3485 -0.8673 17 6 7.6925 2.4853 -1.7294 18 6 8.0957 0.1990 -0.9376 19 1 7.7301 -0.7055 -0.4743 20 6 9.3163 0.1940 -1.6062 21 7 10.0327 1.2921 -1.6730 22 14 9.9353 -1.3752 -2.4086 23 1 9.5520 -1.3820 -3.8433 24 1 11.4142 -1.4412 -2.2911 25 1 9.3318 -2.5498 -1.7295 26 6 4.0527 2.5245 0.0000 27 6 3.4221 1.2756 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2006 2.3087 0.0014 32 1 1.2610 4.4968 0.0019 33 1 5.3998 7.0840 -0.7585 34 1 7.7931 5.6051 0.6271 35 1 7.8492 7.2856 -0.1305 36 1 6.0566 8.0737 1.4827 37 1 5.9996 6.3936 2.2411 38 1 7.0889 4.0452 -0.0034 39 1 8.3807 3.1491 -1.2060 40 1 8.1624 2.1226 -2.6436 41 1 6.7823 3.0300 -1.9800 42 1 10.8832 1.2887 -2.1393 43 1 4.0098 0.3695 0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120345693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = 28.001745 kcal Electronic energy + Delta-G solvation = -27549.262989 eV Core-core repulsion = 23754.528422 eV Total energy + Delta-G solvation = -3794.734568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87584 -39.32659 -38.30035 -37.32575 -35.15283 -34.84726 -33.04863 -31.80556 -30.08277 -29.62217 -27.20498 -26.42608 -25.44816 -24.32639 -23.47506 -22.29244 -22.17758 -21.22824 -19.15808 -18.20234 -17.52209 -17.18025 -16.79306 -15.85448 -15.70770 -15.62400 -15.45335 -14.85994 -14.54698 -14.27256 -14.03067 -13.92385 -13.72611 -13.41124 -13.14039 -12.63241 -12.57657 -12.21826 -12.08132 -11.88114 -11.66042 -11.59198 -11.47800 -11.11705 -10.99608 -10.96207 -10.84392 -10.49002 -10.44027 -10.39664 -10.10147 -9.88912 -9.43948 -9.11678 -8.45973 -8.33344 -7.94134 -7.52899 -6.61983 -3.91264 0.52733 1.05846 2.12314 2.99381 3.09245 3.18601 3.24052 3.34503 3.76503 3.81365 3.98338 4.19395 4.41770 4.56240 4.74317 4.83149 4.91625 4.93509 5.01791 5.06995 5.08459 5.15611 5.20801 5.30298 5.34100 5.38471 5.46543 5.67278 5.79257 5.83530 5.93455 6.00126 6.12549 6.15047 6.19127 6.28083 6.28479 6.46471 6.47655 6.62768 6.82919 6.91613 6.96573 7.39049 7.48691 7.91467 8.19963 8.29726 9.00141 9.21568 9.81759 10.43244 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008903 B = 0.005138 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.421159 B = 5447.860116 C = 8241.006485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.109 3.891 4 C -0.172 4.172 5 C -0.064 4.064 6 C 0.104 3.896 7 N -0.471 5.471 8 C 0.180 3.820 9 C -0.105 4.105 10 C -0.173 4.173 11 C -0.163 4.163 12 C -0.150 4.150 13 C -0.027 4.027 14 C 0.460 3.540 15 O -0.581 6.581 16 N -0.415 5.415 17 C 0.098 3.902 18 C -0.313 4.313 19 H 0.110 0.890 20 C 0.039 3.961 21 N -0.849 5.849 22 Si 0.919 3.081 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.265 1.265 26 C -0.044 4.044 27 C -0.114 4.114 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.146 0.854 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.273 0.727 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.121 8.472 -0.068 14.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.064 3.936 4 C -0.192 4.192 5 C -0.083 4.083 6 C -0.018 4.018 7 N -0.180 5.180 8 C 0.028 3.972 9 C -0.124 4.124 10 C -0.210 4.210 11 C -0.201 4.201 12 C -0.172 4.172 13 C -0.039 4.039 14 C 0.249 3.751 15 O -0.467 6.467 16 N -0.131 5.131 17 C -0.046 4.046 18 C -0.441 4.441 19 H 0.127 0.873 20 C -0.168 4.168 21 N -0.485 5.485 22 Si 0.745 3.255 23 H -0.201 1.201 24 H -0.208 1.208 25 H -0.189 1.189 26 C -0.047 4.047 27 C -0.134 4.134 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.163 0.837 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.547 8.566 0.201 15.193 hybrid contribution 0.741 -1.129 -0.488 1.436 sum -11.806 7.437 -0.287 13.956 Atomic orbital electron populations 1.23034 0.78932 1.03791 1.01056 1.86118 1.20867 1.26729 1.88914 1.18948 0.92039 0.84032 0.98619 1.20998 1.00085 0.92068 1.06064 1.20481 0.92009 0.97390 0.98385 1.18663 0.93812 0.87673 1.01611 1.67377 1.11467 1.25677 1.13453 1.20267 0.88627 0.93514 0.94815 1.20749 0.97377 0.93810 1.00429 1.23154 0.90820 1.03910 1.03112 1.22959 1.02914 1.00960 0.93260 1.22340 1.01982 0.91400 1.01435 1.20707 0.92706 0.95060 0.95378 1.17507 0.85233 0.87328 0.85001 1.90639 1.74143 1.40394 1.41565 1.43541 1.25060 1.13776 1.30687 1.21765 0.97700 0.88999 0.96136 1.19765 1.00938 0.88728 1.34665 0.87268 1.25323 0.95011 0.98778 0.97676 1.70087 1.11706 1.29079 1.37648 0.86025 0.77704 0.82056 0.79765 1.20095 1.20818 1.18912 1.18386 0.92674 0.93563 1.00125 1.20693 0.91423 0.98651 1.02583 0.92807 0.92821 0.88387 0.84996 0.84588 0.86115 0.87859 0.87956 0.88326 0.88730 0.83652 0.92389 0.90716 0.94410 0.91670 0.82979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.80 101.05 0.99 1.25 16 2 O -0.31 -4.76 10.48 -19.21 -0.20 -4.96 16 3 C 0.11 1.79 6.68 -39.13 -0.26 1.53 16 4 C -0.17 -2.33 8.94 -39.80 -0.36 -2.69 16 5 C -0.06 -0.93 9.96 -39.46 -0.39 -1.32 16 6 C 0.10 1.86 6.61 -84.83 -0.56 1.30 16 7 N -0.47 -8.19 10.18 -7.25 -0.07 -8.26 16 8 C 0.18 2.99 6.46 -82.60 -0.53 2.45 16 9 C -0.10 -1.36 6.19 -91.77 -0.57 -1.93 16 10 C -0.17 -1.99 9.78 -26.69 -0.26 -2.25 16 11 C -0.16 -1.85 10.24 -26.69 -0.27 -2.12 16 12 C -0.15 -2.78 7.01 -38.93 -0.27 -3.05 16 13 C -0.03 -0.57 4.99 -104.34 -0.52 -1.10 16 14 C 0.46 11.61 6.71 -12.44 -0.08 11.52 16 15 O -0.58 -16.43 14.98 5.26 0.08 -16.36 16 16 N -0.42 -10.57 3.01 -123.38 -0.37 -10.94 16 17 C 0.10 2.14 7.44 59.85 0.45 2.59 16 18 C -0.31 -8.52 9.30 -15.05 -0.14 -8.66 16 19 H 0.11 3.13 7.42 -52.48 -0.39 2.74 16 20 C 0.04 0.99 4.71 -17.44 -0.08 0.91 16 21 N -0.85 -21.46 11.24 55.51 0.62 -20.83 16 22 Si 0.92 19.74 29.64 -169.99 -5.04 14.70 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 26 C -0.04 -0.90 5.76 -106.52 -0.61 -1.51 16 27 C -0.11 -2.27 9.17 -39.12 -0.36 -2.63 16 28 H 0.05 0.44 7.64 -51.93 -0.40 0.04 16 29 H 0.05 0.43 7.64 -51.93 -0.40 0.03 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.13 1.29 6.23 -52.48 -0.33 0.97 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.10 1.32 6.34 -51.93 -0.33 0.99 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.15 2.58 4.45 -52.49 -0.23 2.35 16 39 H 0.06 1.25 7.08 -51.93 -0.37 0.88 16 40 H 0.07 1.70 6.63 -51.93 -0.34 1.36 16 41 H 0.04 0.74 5.98 -51.93 -0.31 0.43 16 42 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.15 3.42 6.24 -52.48 -0.33 3.10 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -31.51 353.36 -8.60 -40.10 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.09 Total: 6.92 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.84 Total: -5.70 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.18 Total: -40.03 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.12 Total: -21.32 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.04 Total: 14.70 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.51 -8.60 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120345693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.106 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds