Wall clock time and date at job start Tue Mar 31 2020 14:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35831 * 117.00431 * 2 1 4 4 C 1.39879 * 119.72254 * 0.02562 * 3 2 1 5 5 C 1.35918 * 120.98673 * 179.97438 * 4 3 2 6 6 C 1.40761 * 119.95720 * 0.02562 * 5 4 3 7 7 N 1.33565 * 120.83273 * 179.97438 * 6 5 4 8 8 C 1.31029 * 121.89793 * 180.02562 * 7 6 5 9 9 C 1.50703 * 119.03784 * 180.02562 * 8 7 6 10 10 C 1.53001 * 117.49505 * 163.74933 * 9 8 7 11 11 C 1.53005 * 117.49732 * 95.09426 * 9 8 7 12 12 C 1.39146 * 121.92349 * 0.02996 * 8 7 6 13 13 C 1.39082 * 119.54986 * 359.97438 * 12 8 7 14 14 C 1.47602 * 121.12318 * 179.97438 * 13 12 8 15 15 O 1.21617 * 119.99930 * 132.48686 * 14 13 12 16 16 N 1.34777 * 120.00319 * 312.47819 * 14 13 12 17 17 C 1.46501 * 119.99591 * 4.79177 * 16 14 13 18 18 C 1.36676 * 120.00327 * 184.78672 * 16 14 13 19 19 H 1.08005 * 119.99734 * 13.53508 * 18 16 14 20 20 C 1.39169 * 120.00283 * 193.53731 * 18 16 14 21 21 N 1.31287 * 119.99887 * 28.82500 * 20 18 16 22 22 Si 1.86799 * 120.00064 * 208.82477 * 20 18 16 23 23 H 1.48500 * 109.46829 * 94.99960 * 22 20 18 24 24 H 1.48505 * 109.46855 * 214.99321 * 22 20 18 25 25 H 1.48494 * 109.47201 * 334.99743 * 22 20 18 26 26 C 1.41715 * 119.19179 * 359.97438 * 6 5 4 27 27 C 1.37792 * 119.72533 * 179.97438 * 3 2 1 28 28 H 1.09005 * 109.47293 * 300.00294 * 1 2 3 29 29 H 1.09000 * 109.46960 * 59.99722 * 1 2 3 30 30 H 1.08999 * 109.47551 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.50659 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.02530 * 180.02562 * 5 4 3 33 33 H 1.08993 * 115.54939 * 309.42132 * 9 8 7 34 34 H 1.09004 * 117.50459 * 0.02562 * 10 9 8 35 35 H 1.09005 * 117.49800 * 145.02327 * 10 9 8 36 36 H 1.08996 * 117.49516 * 214.98157 * 11 9 8 37 37 H 1.09000 * 117.49323 * 359.97369 * 11 9 8 38 38 H 1.07998 * 120.22950 * 179.97438 * 12 8 7 39 39 H 1.09002 * 109.47393 * 87.87051 * 17 16 14 40 40 H 1.08999 * 109.46797 * 207.86497 * 17 16 14 41 41 H 1.08994 * 109.47612 * 327.87040 * 17 16 14 42 42 H 0.96998 * 119.99830 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.24376 * 359.72536 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2102 0.0000 4 6 1.2783 2.3797 0.0005 5 6 1.8686 3.6040 0.0011 6 6 3.2724 3.7075 0.0005 7 7 3.8708 4.9016 0.0005 8 6 5.1755 5.0223 -0.0004 9 6 5.7826 6.4016 0.0002 10 6 7.2600 6.5229 0.3789 11 6 6.1786 6.9985 1.3522 12 6 6.0169 3.9140 -0.0022 13 6 5.4680 2.6361 -0.0023 14 6 6.3279 1.4364 -0.0047 15 8 6.1052 0.5271 0.7716 16 7 7.3598 1.3485 -0.8673 17 6 7.6925 2.4853 -1.7294 18 6 8.0957 0.1990 -0.9376 19 1 7.7301 -0.7055 -0.4743 20 6 9.3163 0.1940 -1.6062 21 7 10.0327 1.2921 -1.6730 22 14 9.9353 -1.3752 -2.4086 23 1 9.5520 -1.3820 -3.8433 24 1 11.4142 -1.4412 -2.2911 25 1 9.3318 -2.5498 -1.7295 26 6 4.0527 2.5245 0.0000 27 6 3.4221 1.2756 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2006 2.3087 0.0014 32 1 1.2610 4.4968 0.0019 33 1 5.3998 7.0840 -0.7585 34 1 7.7931 5.6051 0.6271 35 1 7.8492 7.2856 -0.1305 36 1 6.0566 8.0737 1.4827 37 1 5.9996 6.3936 2.2411 38 1 7.0889 4.0452 -0.0034 39 1 8.3807 3.1491 -1.2060 40 1 8.1624 2.1226 -2.6436 41 1 6.7823 3.0300 -1.9800 42 1 10.8832 1.2887 -2.1393 43 1 4.0098 0.3695 0.0054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120345693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:32 Heat of formation + Delta-G solvation = 8.546793 kcal Electronic energy + Delta-G solvation = -27550.106619 eV Core-core repulsion = 23754.528422 eV Total energy + Delta-G solvation = -3795.578198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.27125 -40.63125 -40.02967 -38.42612 -36.86513 -36.29239 -34.63273 -33.66983 -31.44317 -30.86438 -28.48413 -27.98408 -27.20872 -25.71169 -24.81932 -23.79949 -23.11092 -22.43943 -20.76141 -19.39475 -19.12725 -18.80155 -18.39264 -17.38876 -17.07066 -16.78027 -16.71251 -16.40559 -16.08948 -15.81000 -15.55059 -15.28040 -15.00919 -14.86058 -14.47256 -14.39600 -13.87623 -13.60590 -13.44447 -13.31299 -13.21172 -13.06425 -12.71150 -12.68609 -12.45754 -12.23472 -12.16879 -12.06072 -11.92003 -11.50301 -11.31746 -11.12667 -11.07956 -10.98484 -10.27109 -9.92860 -9.66880 -8.87163 -8.57668 -5.99364 -0.86963 -0.28174 0.69358 1.32530 1.39067 1.51376 1.69722 1.97539 2.19504 2.27747 2.73148 2.79563 2.89190 2.98802 3.21466 3.53675 3.63777 3.67613 3.76551 3.89609 4.03338 4.07036 4.12452 4.26448 4.32244 4.39774 4.42479 4.44781 4.55131 4.67552 4.73669 4.79385 4.81725 4.90056 4.97421 5.04354 5.09265 5.11691 5.15029 5.24207 5.29469 5.36437 5.44219 5.61145 5.90777 6.31399 6.35160 6.80976 7.00012 7.24522 7.85360 8.47913 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008903 B = 0.005138 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.421159 B = 5447.860116 C = 8241.006485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.339 6.339 3 C 0.131 3.869 4 C -0.158 4.158 5 C -0.047 4.047 6 C 0.087 3.913 7 N -0.458 5.458 8 C 0.174 3.826 9 C -0.115 4.115 10 C -0.170 4.170 11 C -0.151 4.151 12 C -0.136 4.136 13 C -0.064 4.064 14 C 0.454 3.546 15 O -0.628 6.628 16 N -0.429 5.429 17 C 0.113 3.887 18 C -0.362 4.362 19 H 0.076 0.924 20 C 0.015 3.985 21 N -0.863 5.863 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.267 1.267 25 H -0.276 1.276 26 C -0.057 4.057 27 C -0.169 4.169 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.184 0.816 32 H 0.177 0.823 33 H 0.142 0.858 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.147 0.853 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.283 0.717 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.490 11.243 -0.970 18.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.252 6.252 3 C 0.085 3.915 4 C -0.178 4.178 5 C -0.066 4.066 6 C -0.035 4.035 7 N -0.166 5.166 8 C 0.021 3.979 9 C -0.134 4.134 10 C -0.207 4.207 11 C -0.189 4.189 12 C -0.157 4.157 13 C -0.075 4.075 14 C 0.245 3.755 15 O -0.517 6.517 16 N -0.144 5.144 17 C -0.030 4.030 18 C -0.490 4.490 19 H 0.094 0.906 20 C -0.191 4.191 21 N -0.498 5.498 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.192 1.192 25 H -0.201 1.201 26 C -0.060 4.060 27 C -0.189 4.189 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.135 0.865 31 H 0.201 0.799 32 H 0.194 0.806 33 H 0.160 0.840 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.914 11.365 -0.718 18.764 hybrid contribution 1.277 -1.997 -0.134 2.374 sum -13.637 9.368 -0.852 16.567 Atomic orbital electron populations 1.23505 0.75538 1.05987 1.03128 1.86112 1.24401 1.26543 1.88189 1.19072 0.91043 0.85787 0.95567 1.21421 1.02206 0.90130 1.04035 1.20959 0.90502 0.99255 0.95842 1.19095 0.95359 0.86794 1.02287 1.67507 1.11597 1.25080 1.12449 1.20744 0.88320 0.94619 0.94178 1.20860 0.98242 0.92002 1.02292 1.23220 0.90362 1.03857 1.03306 1.23059 1.01670 1.02344 0.91812 1.22448 1.02391 0.90989 0.99887 1.20456 0.93292 0.94365 0.99420 1.18172 0.85314 0.88009 0.83989 1.90567 1.75300 1.42505 1.43347 1.43720 1.25265 1.14197 1.31182 1.21686 0.98424 0.87962 0.94965 1.19616 1.02771 0.88701 1.37868 0.90635 1.26051 0.94209 1.02087 0.96784 1.70095 1.12014 1.30449 1.37248 0.85074 0.77586 0.77695 0.78929 1.18701 1.19209 1.20057 1.18513 0.92215 0.94680 1.00595 1.20412 0.93232 0.97229 1.08036 0.90668 0.90536 0.86501 0.79900 0.80616 0.84025 0.89827 0.85343 0.85324 0.90136 0.83563 0.92294 0.91729 0.92499 0.90675 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.80 113.37 1.11 1.30 16 2 O -0.34 -10.13 10.48 -91.65 -0.96 -11.09 16 3 C 0.13 4.29 6.68 22.56 0.15 4.44 16 4 C -0.16 -3.72 8.94 22.13 0.20 -3.52 16 5 C -0.05 -1.21 9.96 22.35 0.22 -0.98 16 6 C 0.09 3.01 6.61 40.36 0.27 3.28 16 7 N -0.46 -15.13 10.18 -176.85 -1.80 -16.93 16 8 C 0.17 5.63 6.46 42.90 0.28 5.91 16 9 C -0.12 -2.73 6.19 -11.54 -0.07 -2.80 16 10 C -0.17 -3.60 9.78 30.62 0.30 -3.30 16 11 C -0.15 -3.04 10.24 30.62 0.31 -2.72 16 12 C -0.14 -5.21 7.01 22.69 0.16 -5.05 16 13 C -0.06 -2.94 4.99 -19.68 -0.10 -3.03 16 14 C 0.45 25.15 6.71 86.72 0.58 25.73 16 15 O -0.63 -39.50 14.98 -4.08 -0.06 -39.56 16 16 N -0.43 -23.54 3.01 -662.51 -2.00 -25.54 16 17 C 0.11 5.18 7.44 127.77 0.95 6.13 16 18 C -0.36 -21.23 9.30 84.16 0.78 -20.45 16 19 H 0.08 4.81 7.42 -2.91 -0.02 4.78 16 20 C 0.02 0.80 4.71 85.00 0.40 1.20 16 21 N -0.86 -44.49 11.24 21.70 0.24 -44.24 16 22 Si 0.98 41.66 29.64 68.60 2.03 43.69 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.06 -2.41 5.76 -21.09 -0.12 -2.54 16 27 C -0.17 -7.26 9.17 22.57 0.21 -7.05 16 28 H 0.07 0.90 7.64 -2.38 -0.02 0.88 16 29 H 0.08 0.89 7.64 -2.39 -0.02 0.87 16 30 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.18 2.44 6.23 -2.91 -0.02 2.42 16 32 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.14 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.08 2.12 6.34 -2.39 -0.02 2.10 16 35 H 0.13 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.15 5.44 4.45 -2.91 -0.01 5.43 16 39 H 0.06 2.65 7.08 -2.39 -0.02 2.63 16 40 H 0.06 3.05 6.63 -2.39 -0.02 3.04 16 41 H 0.06 2.34 5.98 -2.39 -0.01 2.33 16 42 H 0.28 13.33 8.31 -92.71 -0.77 12.56 16 43 H 0.11 5.47 6.24 -2.91 -0.02 5.45 16 Total: -1.00 -76.89 353.36 4.15 -72.74 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 1.06 Total: 24.38 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 5.63 Total: -3.46 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -3.55 Total: -86.71 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -1.02 Total: -50.64 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -76.89 4.15 -72.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120345693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.288 kcal (2) G-P(sol) polarization free energy of solvation -76.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds