Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00171 * 2 1 4 4 O 1.45197 * 109.46928 * 134.99728 * 3 2 1 5 5 C 1.34833 * 117.00220 * 180.02562 * 4 3 2 6 6 O 1.21582 * 119.99578 * 0.02562 * 5 4 3 7 7 C 1.46919 * 120.00781 * 180.02562 * 5 4 3 8 8 C 1.43200 * 119.99261 * 353.62914 * 7 5 4 9 9 N 5.46585 * 137.64905 * 84.28037 * 2 1 3 10 10 C 1.37959 * 120.00261 * 173.62897 * 7 5 4 11 11 C 1.46296 * 120.00222 * 348.08292 * 10 7 5 12 12 C 1.40331 * 120.11375 * 316.27858 * 11 10 7 13 13 C 1.36497 * 119.88096 * 179.71192 * 12 11 10 14 14 C 1.39374 * 120.11300 * 0.58249 * 13 12 11 15 15 N 1.38887 * 119.88136 * 179.68982 * 14 13 12 16 16 C 1.46505 * 120.00073 * 179.97438 * 15 14 13 17 17 C 1.46501 * 120.00217 * 359.97438 * 15 14 13 18 18 C 1.50698 * 109.47302 * 89.99518 * 17 15 14 19 19 H 1.07994 * 119.99950 * 359.97438 * 18 17 15 20 20 C 1.37878 * 119.99480 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00419 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99638 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47309 * 119.99415 * 22 20 18 25 25 H 1.48499 * 109.46895 * 239.99837 * 22 20 18 26 26 C 1.39363 * 120.22948 * 359.67163 * 14 13 12 27 27 C 1.36484 * 120.12187 * 0.04416 * 26 14 13 28 28 H 1.07999 * 120.00029 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00022 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00022 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46794 * 15.00601 * 3 2 1 32 32 H 1.08990 * 109.47159 * 255.00295 * 3 2 1 33 33 H 1.08008 * 119.99730 * 168.36362 * 10 7 5 34 34 H 1.08001 * 120.06235 * 359.97438 * 12 11 10 35 35 H 1.07993 * 119.94576 * 180.27452 * 13 12 11 36 36 H 1.09005 * 109.46452 * 90.00446 * 16 15 14 37 37 H 1.08989 * 109.47297 * 210.00048 * 16 15 14 38 38 H 1.08999 * 109.47034 * 330.00773 * 16 15 14 39 39 H 1.08998 * 109.47049 * 209.99798 * 17 15 14 40 40 H 1.09003 * 109.47001 * 329.99485 * 17 15 14 41 41 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 42 42 H 1.08009 * 119.93712 * 180.02562 * 26 14 13 43 43 H 1.08003 * 120.05869 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2402 0.9680 5 6 3.9200 2.3355 1.0934 6 8 3.6994 3.3181 0.4122 7 6 5.0325 2.3417 2.0530 8 6 5.2098 1.2401 2.9506 9 7 5.3494 0.3670 3.6638 10 6 5.9062 3.4087 2.0894 11 6 5.8915 4.4032 1.0165 12 6 5.8047 3.9928 -0.3226 13 6 5.7854 4.9249 -1.3196 14 6 5.8640 6.2816 -1.0101 15 7 5.8505 7.2256 -2.0287 16 6 5.9324 8.6524 -1.7063 17 6 5.7543 6.7947 -3.4256 18 6 4.3041 6.7106 -3.8267 19 1 3.5313 6.9534 -3.1124 20 6 3.9639 6.3226 -5.1053 21 7 4.9049 6.0265 -5.9749 22 14 2.1663 6.2190 -5.6027 23 1 1.3110 6.6010 -4.4503 24 1 1.9122 7.1440 -6.7363 25 1 1.8466 4.8292 -6.0166 26 6 5.9557 6.6941 0.3179 27 6 5.9700 5.7705 1.3226 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1161 0.2661 32 1 2.4755 1.4868 -0.9926 33 1 6.6042 3.5075 2.9078 34 1 5.7490 2.9416 -0.5638 35 1 5.7141 4.6105 -2.3503 36 1 6.9778 8.9601 -1.6828 37 1 5.4015 9.2274 -2.4648 38 1 5.4790 8.8312 -0.7313 39 1 6.2666 7.5145 -4.0639 40 1 6.2193 5.8151 -3.5365 41 1 4.6656 5.7540 -6.8746 42 1 6.0160 7.7467 0.5525 43 1 6.0407 6.0913 2.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120433343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = 30.244346 kcal Electronic energy + Delta-G solvation = -26582.259069 eV Core-core repulsion = 22787.621748 eV Total energy + Delta-G solvation = -3794.637321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46547 -39.12603 -37.19356 -36.51327 -35.79643 -34.07467 -33.37540 -32.63580 -30.81680 -29.31226 -27.96043 -27.05181 -25.63708 -23.98127 -22.70986 -21.73191 -21.30261 -20.24456 -19.70605 -18.78653 -17.04504 -16.84926 -16.59042 -16.37073 -15.56345 -15.26300 -15.11689 -14.47208 -14.26487 -14.10768 -13.93116 -13.66154 -13.46625 -13.26413 -13.14264 -12.95679 -12.80877 -12.74716 -12.43075 -12.26136 -12.12197 -11.57890 -11.38528 -11.37284 -11.26290 -11.06899 -10.80815 -10.77148 -10.49003 -10.42731 -10.05462 -9.93354 -9.64622 -9.55257 -8.71880 -8.58939 -8.36087 -6.57901 -6.12706 -4.26616 0.33425 1.82857 2.06826 2.21048 2.52534 2.59193 3.00626 3.20716 3.29302 3.34336 3.54602 3.89006 3.95090 4.33064 4.40141 4.58756 4.85499 4.90161 5.03451 5.13453 5.23683 5.28642 5.30765 5.40828 5.56297 5.59777 5.67493 5.74169 5.86806 5.90550 6.08642 6.21846 6.23688 6.31903 6.40340 6.41817 6.51154 6.77557 6.85254 6.94235 7.08065 7.21058 7.37757 7.49793 7.71616 7.90961 7.99687 8.05832 8.24385 8.81545 9.40756 10.86916 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009250 B = 0.004152 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.263640 B = 6741.310846 C = 9222.397557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.154 4.154 3 C 0.095 3.905 4 O -0.357 6.357 5 C 0.511 3.489 6 O -0.469 6.469 7 C -0.163 4.163 8 C 0.270 3.730 9 N -0.432 5.432 10 C 0.127 3.873 11 C -0.211 4.211 12 C 0.019 3.981 13 C -0.200 4.200 14 C 0.278 3.722 15 N -0.597 5.597 16 C 0.090 3.910 17 C 0.243 3.757 18 C -0.533 4.533 19 H 0.061 0.939 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.241 4.241 27 C -0.018 4.018 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.264 0.736 42 H 0.119 0.881 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 -3.735 12.966 13.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.021 3.979 4 O -0.275 6.275 5 C 0.355 3.645 6 O -0.356 6.356 7 C -0.168 4.168 8 C -0.044 4.044 9 N -0.109 5.109 10 C 0.104 3.896 11 C -0.214 4.214 12 C -0.001 4.001 13 C -0.222 4.222 14 C 0.165 3.835 15 N -0.296 5.296 16 C -0.054 4.054 17 C 0.123 3.877 18 C -0.572 4.572 19 H 0.080 0.920 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.264 4.264 27 C -0.037 4.037 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.153 0.847 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.137 0.863 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.013 -4.637 13.379 14.159 hybrid contribution -1.324 0.262 -0.887 1.615 sum -1.337 -4.375 12.492 13.303 Atomic orbital electron populations 1.23883 0.95453 1.02544 0.99196 1.22704 0.95680 0.97839 1.01000 1.22061 0.87070 0.96531 0.92195 1.86594 1.42081 1.40501 1.58286 1.20459 0.81627 0.81153 0.81309 1.91085 1.69011 1.33222 1.42276 1.17038 1.01736 0.96181 1.01846 1.25285 0.93494 0.92862 0.92742 1.81203 1.08735 1.10179 1.10742 1.23089 0.87168 0.86688 0.92667 1.18226 1.18525 0.92517 0.92137 1.20546 0.90226 0.98299 0.90991 1.20519 1.10154 0.90959 1.00601 1.18252 0.87535 0.89646 0.88019 1.47241 1.71742 1.03752 1.06907 1.21622 1.00222 0.82257 1.01267 1.19447 0.97324 0.96476 0.74433 1.21548 0.92157 1.46388 0.97100 0.92030 1.24941 0.97804 0.94883 0.96261 1.69929 1.32357 1.45571 1.05353 0.86459 0.84777 0.77869 0.78521 1.19634 1.20900 1.20762 1.20224 1.15506 0.99421 0.91200 1.20512 0.93898 0.91191 0.98094 0.87541 0.88108 0.86320 0.90447 0.89609 0.83813 0.87435 0.84686 0.93888 0.90981 0.92148 0.94787 0.94209 0.92587 0.86319 0.86572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 14.31 29.02 0.42 -1.16 16 2 C -0.15 -1.63 9.90 -36.02 -0.36 -1.98 16 3 C 0.09 1.19 5.89 36.01 0.21 1.40 16 4 O -0.36 -5.02 9.75 -40.85 -0.40 -5.42 16 5 C 0.51 7.42 6.95 34.24 0.24 7.65 16 6 O -0.47 -7.98 12.13 -19.33 -0.23 -8.21 16 7 C -0.16 -2.00 5.73 -104.56 -0.60 -2.60 16 8 C 0.27 3.55 14.99 -22.47 -0.34 3.21 16 9 N -0.43 -6.40 18.54 41.84 0.78 -5.63 16 10 C 0.13 1.35 9.52 -36.45 -0.35 1.00 16 11 C -0.21 -2.89 4.57 -105.08 -0.48 -3.37 16 12 C 0.02 0.31 6.62 -39.42 -0.26 0.05 16 13 C -0.20 -3.78 9.13 -39.79 -0.36 -4.15 16 14 C 0.28 5.13 6.55 -83.82 -0.55 4.58 16 15 N -0.60 -11.73 2.97 -180.96 -0.54 -12.27 16 16 C 0.09 1.41 10.17 59.85 0.61 2.02 16 17 C 0.24 5.72 4.89 -5.19 -0.03 5.69 16 18 C -0.53 -13.97 9.39 -34.44 -0.32 -14.29 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 22 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.24 -3.66 9.13 -39.80 -0.36 -4.03 16 27 C -0.02 -0.23 9.75 -39.43 -0.38 -0.62 16 28 H 0.11 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.10 0.86 7.90 -52.49 -0.41 0.45 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 31 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.11 1.64 7.09 -52.49 -0.37 1.27 16 35 H 0.14 2.86 6.10 -52.49 -0.32 2.54 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.17 8.07 -51.94 -0.42 0.75 16 38 H 0.06 0.82 6.16 -51.93 -0.32 0.50 16 39 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.04 0.99 6.16 -51.93 -0.32 0.67 16 41 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.12 1.58 6.11 -52.48 -0.32 1.26 16 43 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -30.23 378.65 -7.38 -37.61 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.40 Total: 1.42 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.01 Total: -4.98 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.97 Total: -41.90 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.63 Total: -13.63 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.23 -7.38 -37.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120433343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.857 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds