Wall clock time and date at job start Tue Mar 31 2020 14:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 120.00171 * 2 1 4 4 O 1.45197 * 109.46928 * 134.99728 * 3 2 1 5 5 C 1.34833 * 117.00220 * 180.02562 * 4 3 2 6 6 O 1.21582 * 119.99578 * 0.02562 * 5 4 3 7 7 C 1.46919 * 120.00781 * 180.02562 * 5 4 3 8 8 C 1.43200 * 119.99261 * 353.62914 * 7 5 4 9 9 N 5.46585 * 137.64905 * 84.28037 * 2 1 3 10 10 C 1.37959 * 120.00261 * 173.62897 * 7 5 4 11 11 C 1.46296 * 120.00222 * 348.08292 * 10 7 5 12 12 C 1.40331 * 120.11375 * 316.27858 * 11 10 7 13 13 C 1.36497 * 119.88096 * 179.71192 * 12 11 10 14 14 C 1.39374 * 120.11300 * 0.58249 * 13 12 11 15 15 N 1.38887 * 119.88136 * 179.68982 * 14 13 12 16 16 C 1.46505 * 120.00073 * 179.97438 * 15 14 13 17 17 C 1.46501 * 120.00217 * 359.97438 * 15 14 13 18 18 C 1.50698 * 109.47302 * 89.99518 * 17 15 14 19 19 H 1.07994 * 119.99950 * 359.97438 * 18 17 15 20 20 C 1.37878 * 119.99480 * 180.02562 * 18 17 15 21 21 N 1.31511 * 120.00419 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99638 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47032 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47309 * 119.99415 * 22 20 18 25 25 H 1.48499 * 109.46895 * 239.99837 * 22 20 18 26 26 C 1.39363 * 120.22948 * 359.67163 * 14 13 12 27 27 C 1.36484 * 120.12187 * 0.04416 * 26 14 13 28 28 H 1.07999 * 120.00029 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00022 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00022 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46794 * 15.00601 * 3 2 1 32 32 H 1.08990 * 109.47159 * 255.00295 * 3 2 1 33 33 H 1.08008 * 119.99730 * 168.36362 * 10 7 5 34 34 H 1.08001 * 120.06235 * 359.97438 * 12 11 10 35 35 H 1.07993 * 119.94576 * 180.27452 * 13 12 11 36 36 H 1.09005 * 109.46452 * 90.00446 * 16 15 14 37 37 H 1.08989 * 109.47297 * 210.00048 * 16 15 14 38 38 H 1.08999 * 109.47034 * 330.00773 * 16 15 14 39 39 H 1.08998 * 109.47049 * 209.99798 * 17 15 14 40 40 H 1.09003 * 109.47001 * 329.99485 * 17 15 14 41 41 H 0.97003 * 119.99949 * 180.02562 * 21 20 18 42 42 H 1.08009 * 119.93712 * 180.02562 * 26 14 13 43 43 H 1.08003 * 120.05869 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1438 1.2402 0.9680 5 6 3.9200 2.3355 1.0934 6 8 3.6994 3.3181 0.4122 7 6 5.0325 2.3417 2.0530 8 6 5.2098 1.2401 2.9506 9 7 5.3494 0.3670 3.6638 10 6 5.9062 3.4087 2.0894 11 6 5.8915 4.4032 1.0165 12 6 5.8047 3.9928 -0.3226 13 6 5.7854 4.9249 -1.3196 14 6 5.8640 6.2816 -1.0101 15 7 5.8505 7.2256 -2.0287 16 6 5.9324 8.6524 -1.7063 17 6 5.7543 6.7947 -3.4256 18 6 4.3041 6.7106 -3.8267 19 1 3.5313 6.9534 -3.1124 20 6 3.9639 6.3226 -5.1053 21 7 4.9049 6.0265 -5.9749 22 14 2.1663 6.2190 -5.6027 23 1 1.3110 6.6010 -4.4503 24 1 1.9122 7.1440 -6.7363 25 1 1.8466 4.8292 -6.0166 26 6 5.9557 6.6941 0.3179 27 6 5.9700 5.7705 1.3226 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3855 2.1161 0.2661 32 1 2.4755 1.4868 -0.9926 33 1 6.6042 3.5075 2.9078 34 1 5.7490 2.9416 -0.5638 35 1 5.7141 4.6105 -2.3503 36 1 6.9778 8.9601 -1.6828 37 1 5.4015 9.2274 -2.4648 38 1 5.4790 8.8312 -0.7313 39 1 6.2666 7.5145 -4.0639 40 1 6.2193 5.8151 -3.5365 41 1 4.6656 5.7540 -6.8746 42 1 6.0160 7.7467 0.5525 43 1 6.0407 6.0913 2.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120433343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:26 Heat of formation + Delta-G solvation = 15.506860 kcal Electronic energy + Delta-G solvation = -26582.898135 eV Core-core repulsion = 22787.621748 eV Total energy + Delta-G solvation = -3795.276387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61741 -40.38922 -38.35295 -37.64347 -37.11545 -34.96181 -34.95436 -34.15978 -32.09455 -30.61969 -29.59666 -28.07017 -26.98713 -25.48137 -24.03555 -22.99275 -22.58443 -21.12739 -20.94390 -19.84486 -18.66458 -18.29984 -17.96541 -17.51603 -16.88559 -16.72662 -16.08869 -16.05897 -15.43566 -15.40077 -15.21945 -14.73273 -14.61161 -14.39662 -14.35629 -14.23190 -14.00424 -13.89794 -13.78760 -13.51439 -13.30574 -13.20336 -13.04678 -12.69513 -12.57462 -12.54604 -12.22103 -12.14119 -11.89275 -11.82225 -11.57407 -11.49021 -10.88518 -10.65021 -10.47161 -9.99455 -9.62883 -8.35736 -7.78178 -6.38596 -0.68089 0.83533 0.98416 1.01265 1.34189 1.36727 1.40778 1.48267 1.55263 2.01811 2.32405 2.49042 2.57313 2.84178 3.05115 3.16071 3.70623 3.94343 3.98325 4.00630 4.04565 4.19940 4.31600 4.37749 4.47175 4.56095 4.59679 4.71470 4.76858 4.83839 4.87143 4.94750 5.03195 5.05561 5.19841 5.29270 5.40021 5.54304 5.58726 5.63465 5.64099 5.68719 5.79890 6.04041 6.12733 6.43707 6.45237 6.78019 6.78858 6.86509 7.32827 8.81403 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.009250 B = 0.004152 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3026.263640 B = 6741.310846 C = 9222.397557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.176 4.176 3 C 0.092 3.908 4 O -0.363 6.363 5 C 0.509 3.491 6 O -0.501 6.501 7 C -0.165 4.165 8 C 0.292 3.708 9 N -0.459 5.459 10 C 0.159 3.841 11 C -0.204 4.204 12 C 0.015 3.985 13 C -0.231 4.231 14 C 0.248 3.752 15 N -0.616 5.616 16 C 0.090 3.910 17 C 0.261 3.739 18 C -0.540 4.540 19 H 0.048 0.952 20 C 0.016 3.984 21 N -0.924 5.924 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.279 1.279 26 C -0.236 4.236 27 C -0.007 4.007 28 H 0.129 0.871 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.200 0.800 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.014 0.986 41 H 0.267 0.733 42 H 0.143 0.857 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -3.616 16.286 16.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.194 4.194 3 C 0.019 3.981 4 O -0.280 6.280 5 C 0.354 3.646 6 O -0.390 6.390 7 C -0.171 4.171 8 C -0.022 4.022 9 N -0.137 5.137 10 C 0.137 3.863 11 C -0.207 4.207 12 C -0.004 4.004 13 C -0.254 4.254 14 C 0.139 3.861 15 N -0.319 5.319 16 C -0.052 4.052 17 C 0.140 3.860 18 C -0.579 4.579 19 H 0.066 0.934 20 C -0.184 4.184 21 N -0.564 5.564 22 Si 0.782 3.218 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.204 1.204 26 C -0.259 4.259 27 C -0.026 4.026 28 H 0.147 0.853 29 H 0.123 0.877 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.217 0.783 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.451 -4.538 16.745 17.355 hybrid contribution -1.216 0.109 -1.794 2.171 sum -1.667 -4.428 14.951 15.682 Atomic orbital electron populations 1.24145 0.94898 1.03834 0.96414 1.22685 0.96247 0.96955 1.03509 1.22154 0.86779 0.97896 0.91249 1.86602 1.42421 1.40460 1.58535 1.20915 0.81878 0.80730 0.81092 1.91089 1.69923 1.34291 1.43709 1.16948 1.01949 0.96732 1.01464 1.25138 0.92622 0.92379 0.92049 1.81241 1.09760 1.10832 1.11820 1.23481 0.86495 0.83990 0.92330 1.18502 1.16512 0.94027 0.91617 1.20590 0.90080 0.97712 0.92044 1.20337 1.13183 0.92497 0.99337 1.18526 0.89269 0.89040 0.89264 1.47032 1.74062 1.05452 1.05383 1.21753 1.01522 0.79957 1.01964 1.18875 0.95379 0.94631 0.77127 1.21758 0.93241 1.45903 0.96966 0.93352 1.25706 1.01664 0.94634 0.96360 1.70026 1.34163 1.46512 1.05709 0.85529 0.80098 0.77994 0.78227 1.19623 1.19803 1.20441 1.20541 1.14309 1.01269 0.89750 1.21035 0.91397 0.90109 1.00017 0.85286 0.87712 0.85784 0.90628 0.90988 0.78331 0.87661 0.88928 0.92003 0.92390 0.89643 0.96715 0.96760 0.92383 0.83898 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 14.31 67.78 0.97 -1.61 16 2 C -0.18 -3.62 9.90 25.65 0.25 -3.37 16 3 C 0.09 2.37 5.89 71.24 0.42 2.79 16 4 O -0.36 -10.16 9.75 -57.45 -0.56 -10.72 16 5 C 0.51 14.37 6.95 70.10 0.49 14.86 16 6 O -0.50 -17.06 12.13 19.57 0.24 -16.83 16 7 C -0.17 -3.62 5.73 -19.82 -0.11 -3.74 16 8 C 0.29 6.87 14.99 88.33 1.32 8.20 16 9 N -0.46 -12.61 18.54 19.00 0.35 -12.25 16 10 C 0.16 2.66 9.52 24.30 0.23 2.90 16 11 C -0.20 -4.96 4.57 -20.16 -0.09 -5.05 16 12 C 0.02 0.49 6.62 22.37 0.15 0.64 16 13 C -0.23 -9.26 9.13 22.14 0.20 -9.06 16 14 C 0.25 9.32 6.55 38.57 0.25 9.57 16 15 N -0.62 -25.17 2.97 -726.43 -2.16 -27.33 16 16 C 0.09 2.82 10.17 127.77 1.30 4.12 16 17 C 0.26 13.21 4.89 85.63 0.42 13.63 16 18 C -0.54 -29.80 9.39 25.60 0.24 -29.56 16 19 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 20 C 0.02 0.88 5.46 84.66 0.46 1.34 16 21 N -0.92 -53.42 13.29 21.45 0.28 -53.14 16 22 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 26 C -0.24 -6.58 9.13 22.13 0.20 -6.38 16 27 C -0.01 -0.15 9.75 22.37 0.22 0.07 16 28 H 0.13 1.55 8.06 -2.91 -0.02 1.53 16 29 H 0.10 1.64 7.90 -2.91 -0.02 1.62 16 30 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 31 H 0.08 1.91 7.86 -2.38 -0.02 1.89 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.20 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.11 3.35 7.09 -2.91 -0.02 3.33 16 35 H 0.09 4.41 6.10 -2.91 -0.02 4.39 16 36 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.06 1.92 8.07 -2.39 -0.02 1.90 16 38 H 0.09 2.17 6.16 -2.39 -0.01 2.16 16 39 H 0.01 0.79 8.07 -2.39 -0.02 0.77 16 40 H 0.01 0.79 6.16 -2.39 -0.01 0.78 16 41 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 42 H 0.14 3.24 6.11 -2.91 -0.02 3.22 16 43 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -70.63 378.65 8.14 -62.50 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.03 Total: 12.54 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 6.92 Total: -0.66 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -1.52 Total: -92.72 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.32 Total: -27.54 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -70.63 8.14 -62.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120433343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.004 kcal (2) G-P(sol) polarization free energy of solvation -70.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds