Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36946 * 119.99754 * 2 1 4 4 H 1.07997 * 119.99596 * 213.37388 * 3 2 1 5 5 C 1.38809 * 120.00061 * 33.36482 * 3 2 1 6 6 N 1.31621 * 119.99777 * 5.72377 * 5 3 2 7 7 Si 1.86804 * 120.00073 * 185.71460 * 5 3 2 8 8 H 1.48500 * 109.46878 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46605 * 120.00262 * 7 5 3 10 10 H 1.48497 * 109.47187 * 240.00237 * 7 5 3 11 11 C 1.46497 * 120.00461 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47055 * 270.00057 * 11 2 1 13 13 O 1.21289 * 120.00199 * 359.97438 * 12 11 2 14 14 N 1.34779 * 119.99383 * 179.97438 * 12 11 2 15 15 C 1.40100 * 119.99286 * 183.84670 * 14 12 11 16 16 C 1.38859 * 120.00763 * 144.72729 * 15 14 12 17 17 C 1.38079 * 119.98462 * 180.27464 * 16 15 14 18 18 C 1.38758 * 120.01050 * 359.51489 * 17 16 15 19 19 O 1.35946 * 119.98380 * 180.25580 * 18 17 16 20 20 C 1.35881 * 118.00093 * 75.73143 * 19 18 17 21 21 C 1.38755 * 120.06142 * 5.17520 * 20 19 18 22 22 C 1.38138 * 119.94257 * 179.74117 * 21 20 19 23 23 C 1.38267 * 120.05852 * 0.52977 * 22 21 20 24 24 C 1.38269 * 120.11746 * 359.72472 * 23 22 21 25 25 C 1.38138 * 120.05767 * 0.02562 * 24 23 22 26 26 C 1.38744 * 120.02428 * 0.45621 * 18 17 16 27 27 C 1.38070 * 120.01483 * 359.80005 * 26 18 17 28 28 H 1.09004 * 109.46758 * 265.09829 * 1 2 3 29 29 H 1.08995 * 109.47127 * 25.09976 * 1 2 3 30 30 H 1.08996 * 109.46668 * 145.10069 * 1 2 3 31 31 H 0.97008 * 119.99624 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46838 * 149.99655 * 11 2 1 33 33 H 1.08998 * 109.46884 * 29.99865 * 11 2 1 34 34 H 0.96996 * 120.00920 * 3.84714 * 14 12 11 35 35 H 1.07997 * 120.00843 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.99430 * 179.72155 * 17 16 15 37 37 H 1.07997 * 120.02987 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.96994 * 180.25078 * 22 21 20 39 39 H 1.07996 * 119.94237 * 179.69366 * 23 22 21 40 40 H 1.07999 * 119.97486 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.02976 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.99399 * 179.77254 * 26 18 17 43 43 H 1.08002 * 120.01057 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0961 1.2631 -0.5145 5 6 1.6272 2.2891 0.6611 6 7 0.5324 2.1669 1.3814 7 14 2.4780 3.9468 0.5288 8 1 3.6799 3.8188 -0.3340 9 1 1.5444 4.9361 -0.0670 10 1 2.8858 4.4033 1.8817 11 6 2.1976 -1.2686 0.0006 12 6 2.4488 -1.7030 1.4216 13 8 2.0551 -1.0198 2.3432 14 7 3.1110 -2.8507 1.6682 15 6 3.2742 -3.2956 2.9866 16 6 3.2502 -4.6550 3.2688 17 6 3.4054 -5.0927 4.5692 18 6 3.5955 -4.1749 5.5924 19 8 3.7535 -4.6067 6.8717 20 6 4.9507 -5.1474 7.2192 21 6 6.0020 -5.1487 6.3136 22 6 7.2196 -5.6941 6.6714 23 6 7.3881 -6.2484 7.9268 24 6 6.3406 -6.2532 8.8294 25 6 5.1225 -5.7044 8.4785 26 6 3.6202 -2.8166 5.3108 27 6 3.4598 -2.3775 4.0117 28 1 -0.3633 -0.0878 1.0240 29 1 -0.3633 0.9306 -0.4359 30 1 -0.3632 -0.8428 -0.5880 31 1 0.1674 2.9377 1.8437 32 1 3.1500 -1.1384 -0.5134 33 1 1.6086 -2.0285 -0.5129 34 1 3.4745 -3.3686 0.9331 35 1 3.1052 -5.3695 2.4721 36 1 3.3822 -6.1497 4.7894 37 1 5.8697 -4.7194 5.3315 38 1 8.0393 -5.6917 5.9683 39 1 8.3394 -6.6788 8.2028 40 1 6.4746 -6.6871 9.8093 41 1 4.3045 -5.7088 9.1837 42 1 3.7646 -2.1025 6.1081 43 1 3.4787 -1.3201 3.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120782096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = 25.446587 kcal Electronic energy + Delta-G solvation = -26263.294049 eV Core-core repulsion = 22468.448682 eV Total energy + Delta-G solvation = -3794.845368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.97930 -39.75905 -38.36358 -37.13844 -35.12080 -33.93300 -31.39525 -31.19746 -30.99628 -30.35924 -28.88852 -26.88992 -25.76762 -23.63739 -23.07295 -22.68925 -22.06119 -21.13699 -19.77418 -18.76049 -17.58042 -16.97887 -16.74853 -16.48463 -16.05435 -15.73164 -14.85713 -14.78577 -14.58469 -14.30087 -14.01871 -13.71617 -13.66919 -13.53067 -13.33495 -13.15866 -13.00781 -12.64578 -12.26529 -12.14933 -11.83123 -11.79251 -11.31350 -11.15486 -10.95065 -10.89627 -10.68443 -10.45023 -10.10300 -9.96797 -9.85868 -9.24073 -9.16654 -8.89065 -8.52223 -8.47045 -7.81188 -6.68380 -5.77719 -3.33458 1.07384 1.11469 1.24603 1.38399 3.05970 3.34133 3.39960 3.42913 3.44858 3.50093 3.56619 3.90067 4.46565 4.63859 4.70898 4.85952 4.92204 4.93504 5.14199 5.17753 5.31168 5.34621 5.40484 5.51437 5.51595 5.62194 5.76180 5.79951 6.02536 6.05274 6.07120 6.12581 6.19900 6.21143 6.29860 6.36735 6.48564 6.59441 6.69304 6.73178 7.11849 7.28612 7.55875 7.69196 7.77621 7.87018 8.40357 8.91069 9.18138 9.76485 10.29721 11.27782 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002430 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.996491 B =11521.837314 C =12040.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.567 5.567 3 C -0.274 4.274 4 H 0.067 0.933 5 C 0.021 3.979 6 N -0.883 5.883 7 Si 0.902 3.098 8 H -0.276 1.276 9 H -0.288 1.288 10 H -0.288 1.288 11 C 0.133 3.867 12 C 0.465 3.535 13 O -0.480 6.480 14 N -0.693 5.693 15 C 0.168 3.832 16 C -0.145 4.145 17 C -0.113 4.113 18 C 0.047 3.953 19 O -0.256 6.256 20 C 0.126 3.874 21 C -0.193 4.193 22 C -0.083 4.083 23 C -0.160 4.160 24 C -0.085 4.085 25 C -0.151 4.151 26 C -0.098 4.098 27 C -0.110 4.110 28 H 0.026 0.974 29 H 0.054 0.946 30 H -0.004 1.004 31 H 0.254 0.746 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.404 0.596 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.878 -19.111 7.450 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.286 5.286 3 C -0.404 4.404 4 H 0.084 0.916 5 C -0.180 4.180 6 N -0.524 5.524 7 Si 0.732 3.268 8 H -0.201 1.201 9 H -0.215 1.215 10 H -0.215 1.215 11 C 0.000 4.000 12 C 0.250 3.750 13 O -0.349 6.349 14 N -0.342 5.342 15 C 0.072 3.928 16 C -0.166 4.166 17 C -0.132 4.132 18 C 0.004 3.996 19 O -0.168 6.168 20 C 0.083 3.917 21 C -0.212 4.212 22 C -0.101 4.101 23 C -0.178 4.178 24 C -0.103 4.103 25 C -0.170 4.170 26 C -0.117 4.117 27 C -0.130 4.130 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.239 0.761 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.149 0.851 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.196 -18.300 8.226 22.506 hybrid contribution 0.626 0.598 -0.163 0.881 sum 10.822 -17.702 8.063 22.260 Atomic orbital electron populations 1.20833 0.82238 0.97204 0.98175 1.43760 1.01870 0.99703 1.83274 1.19092 1.05851 0.87149 1.28277 0.91576 1.25364 0.97598 0.99283 0.95794 1.70046 1.21457 1.29213 1.31712 0.86247 0.79161 0.84009 0.77431 1.20118 1.21456 1.21471 1.21138 0.98283 0.90767 0.89792 1.24221 0.76002 0.78537 0.96191 1.90726 1.47249 1.50915 1.45976 1.44592 1.57511 1.26778 1.05270 1.18087 0.96149 0.92221 0.86337 1.20763 1.05139 0.94207 0.96475 1.21084 1.00766 0.99432 0.91901 1.18508 1.06336 0.92241 0.82494 1.84430 1.30998 1.74100 1.27229 1.19314 0.84492 0.93808 0.94109 1.21395 0.93781 1.05362 1.00650 1.20983 0.96471 0.96255 0.96398 1.21075 0.99362 1.02959 0.94388 1.20947 0.92100 0.97879 0.99408 1.20455 0.99003 1.02579 0.94944 1.21159 0.99434 0.94090 0.97051 1.21351 0.99147 1.01559 0.90971 0.95564 0.92681 0.98557 0.93593 0.90539 0.91286 0.76139 0.85218 0.85451 0.85157 0.85800 0.85996 0.85412 0.85162 0.85110 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 9.04 59.85 0.54 4.49 16 2 N -0.57 -14.11 2.38 -182.50 -0.43 -14.54 16 3 C -0.27 -7.48 9.55 -15.06 -0.14 -7.62 16 4 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 5 C 0.02 0.60 5.16 -17.43 -0.09 0.51 16 6 N -0.88 -26.33 11.07 55.49 0.61 -25.72 16 7 Si 0.90 21.87 29.56 -169.99 -5.02 16.85 16 8 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 C 0.13 2.55 6.19 -5.20 -0.03 2.52 16 12 C 0.47 9.20 7.74 -10.99 -0.08 9.12 16 13 O -0.48 -12.09 13.90 5.55 0.08 -12.01 16 14 N -0.69 -10.22 5.34 -9.83 -0.05 -10.27 16 15 C 0.17 2.55 6.30 -83.62 -0.53 2.03 16 16 C -0.14 -1.79 9.96 -39.41 -0.39 -2.18 16 17 C -0.11 -1.40 9.06 -39.45 -0.36 -1.76 16 18 C 0.05 0.66 4.35 -39.20 -0.17 0.49 16 19 O -0.26 -3.58 9.98 -3.70 -0.04 -3.61 16 20 C 0.13 1.55 6.60 -39.20 -0.26 1.29 16 21 C -0.19 -2.19 8.96 -39.43 -0.35 -2.55 16 22 C -0.08 -0.79 10.04 -39.61 -0.40 -1.18 16 23 C -0.16 -1.36 10.04 -39.56 -0.40 -1.76 16 24 C -0.09 -0.74 10.04 -39.61 -0.40 -1.13 16 25 C -0.15 -1.58 9.99 -39.42 -0.39 -1.97 16 26 C -0.10 -1.49 9.98 -39.46 -0.39 -1.89 16 27 C -0.11 -1.86 8.69 -39.41 -0.34 -2.20 16 28 H 0.03 0.72 7.74 -51.93 -0.40 0.32 16 29 H 0.05 1.44 7.20 -51.93 -0.37 1.07 16 30 H 0.00 -0.08 7.96 -51.93 -0.41 -0.50 16 31 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 33 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.40 4.25 8.82 -40.82 -0.36 3.89 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.51 6.46 -52.49 -0.34 1.17 16 38 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.15 2.97 6.26 -52.49 -0.33 2.64 16 LS Contribution 368.22 15.07 5.55 5.55 Total: -1.00 -34.21 368.22 -9.05 -43.26 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.55 Total: 4.29 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -4.19 Total: -3.80 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.13 Total: -50.53 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.04 Total: -15.62 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.21 -9.05 -43.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120782096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -34.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds