Wall clock time and date at job start Tue Mar 31 2020 14:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36946 * 119.99754 * 2 1 4 4 H 1.07997 * 119.99596 * 213.37388 * 3 2 1 5 5 C 1.38809 * 120.00061 * 33.36482 * 3 2 1 6 6 N 1.31621 * 119.99777 * 5.72377 * 5 3 2 7 7 Si 1.86804 * 120.00073 * 185.71460 * 5 3 2 8 8 H 1.48500 * 109.46878 * 0.02562 * 7 5 3 9 9 H 1.48505 * 109.46605 * 120.00262 * 7 5 3 10 10 H 1.48497 * 109.47187 * 240.00237 * 7 5 3 11 11 C 1.46497 * 120.00461 * 179.97438 * 2 1 3 12 12 C 1.50699 * 109.47055 * 270.00057 * 11 2 1 13 13 O 1.21289 * 120.00199 * 359.97438 * 12 11 2 14 14 N 1.34779 * 119.99383 * 179.97438 * 12 11 2 15 15 C 1.40100 * 119.99286 * 183.84670 * 14 12 11 16 16 C 1.38859 * 120.00763 * 144.72729 * 15 14 12 17 17 C 1.38079 * 119.98462 * 180.27464 * 16 15 14 18 18 C 1.38758 * 120.01050 * 359.51489 * 17 16 15 19 19 O 1.35946 * 119.98380 * 180.25580 * 18 17 16 20 20 C 1.35881 * 118.00093 * 75.73143 * 19 18 17 21 21 C 1.38755 * 120.06142 * 5.17520 * 20 19 18 22 22 C 1.38138 * 119.94257 * 179.74117 * 21 20 19 23 23 C 1.38267 * 120.05852 * 0.52977 * 22 21 20 24 24 C 1.38269 * 120.11746 * 359.72472 * 23 22 21 25 25 C 1.38138 * 120.05767 * 0.02562 * 24 23 22 26 26 C 1.38744 * 120.02428 * 0.45621 * 18 17 16 27 27 C 1.38070 * 120.01483 * 359.80005 * 26 18 17 28 28 H 1.09004 * 109.46758 * 265.09829 * 1 2 3 29 29 H 1.08995 * 109.47127 * 25.09976 * 1 2 3 30 30 H 1.08996 * 109.46668 * 145.10069 * 1 2 3 31 31 H 0.97008 * 119.99624 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46838 * 149.99655 * 11 2 1 33 33 H 1.08998 * 109.46884 * 29.99865 * 11 2 1 34 34 H 0.96996 * 120.00920 * 3.84714 * 14 12 11 35 35 H 1.07997 * 120.00843 * 359.97438 * 16 15 14 36 36 H 1.07997 * 119.99430 * 179.72155 * 17 16 15 37 37 H 1.07997 * 120.02987 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.96994 * 180.25078 * 22 21 20 39 39 H 1.07996 * 119.94237 * 179.69366 * 23 22 21 40 40 H 1.07999 * 119.97486 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.02976 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.99399 * 179.77254 * 26 18 17 43 43 H 1.08002 * 120.01057 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0961 1.2631 -0.5145 5 6 1.6272 2.2891 0.6611 6 7 0.5324 2.1669 1.3814 7 14 2.4780 3.9468 0.5288 8 1 3.6799 3.8188 -0.3340 9 1 1.5444 4.9361 -0.0670 10 1 2.8858 4.4033 1.8817 11 6 2.1976 -1.2686 0.0006 12 6 2.4488 -1.7030 1.4216 13 8 2.0551 -1.0198 2.3432 14 7 3.1110 -2.8507 1.6682 15 6 3.2742 -3.2956 2.9866 16 6 3.2502 -4.6550 3.2688 17 6 3.4054 -5.0927 4.5692 18 6 3.5955 -4.1749 5.5924 19 8 3.7535 -4.6067 6.8717 20 6 4.9507 -5.1474 7.2192 21 6 6.0020 -5.1487 6.3136 22 6 7.2196 -5.6941 6.6714 23 6 7.3881 -6.2484 7.9268 24 6 6.3406 -6.2532 8.8294 25 6 5.1225 -5.7044 8.4785 26 6 3.6202 -2.8166 5.3108 27 6 3.4598 -2.3775 4.0117 28 1 -0.3633 -0.0878 1.0240 29 1 -0.3633 0.9306 -0.4359 30 1 -0.3632 -0.8428 -0.5880 31 1 0.1674 2.9377 1.8437 32 1 3.1500 -1.1384 -0.5134 33 1 1.6086 -2.0285 -0.5129 34 1 3.4745 -3.3686 0.9331 35 1 3.1052 -5.3695 2.4721 36 1 3.3822 -6.1497 4.7894 37 1 5.8697 -4.7194 5.3315 38 1 8.0393 -5.6917 5.9683 39 1 8.3394 -6.6788 8.2028 40 1 6.4746 -6.6871 9.8093 41 1 4.3045 -5.7088 9.1837 42 1 3.7646 -2.1025 6.1081 43 1 3.4787 -1.3201 3.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120782096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:10 Heat of formation + Delta-G solvation = 4.762968 kcal Electronic energy + Delta-G solvation = -26264.190958 eV Core-core repulsion = 22468.448682 eV Total energy + Delta-G solvation = -3795.742277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.00081 -41.05590 -39.42268 -38.26245 -36.95152 -35.33755 -33.34363 -32.13663 -31.97671 -31.25704 -30.15418 -28.42730 -27.78968 -24.80713 -24.14843 -23.58638 -23.49239 -22.37131 -21.23822 -19.70287 -18.99314 -18.59166 -17.98524 -17.77773 -16.96242 -16.83370 -16.77591 -16.08961 -15.60042 -15.50411 -15.25941 -15.07390 -14.89214 -14.76848 -14.67861 -14.37540 -14.35555 -13.84280 -13.67455 -13.46649 -13.12799 -13.04663 -12.85331 -12.52032 -12.51528 -12.26945 -12.13754 -12.01947 -11.94368 -11.84645 -11.16994 -10.81230 -10.56623 -10.09176 -9.95899 -9.33042 -8.99287 -8.67941 -7.86594 -5.44279 -0.03618 0.24916 0.38386 0.44416 1.42400 1.44360 1.54263 1.81475 2.16854 2.18985 2.48581 2.75287 2.81990 3.34173 3.70509 3.78580 3.86214 3.90169 3.99087 4.10528 4.25398 4.27629 4.35860 4.42477 4.49409 4.56726 4.63538 4.71611 4.73628 4.85878 4.91503 5.02068 5.07952 5.24868 5.25559 5.30096 5.36253 5.43269 5.47726 5.58238 5.63081 5.68320 5.81900 5.98478 6.32843 6.57952 6.65722 7.13321 7.47134 7.81041 8.27620 9.18058 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020736 B = 0.002430 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.996491 B =11521.837314 C =12040.748917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.588 5.588 3 C -0.273 4.273 4 H 0.075 0.925 5 C -0.042 4.042 6 N -0.924 5.924 7 Si 0.964 3.036 8 H -0.258 1.258 9 H -0.287 1.287 10 H -0.300 1.300 11 C 0.130 3.870 12 C 0.469 3.531 13 O -0.544 6.544 14 N -0.669 5.669 15 C 0.149 3.851 16 C -0.121 4.121 17 C -0.107 4.107 18 C 0.053 3.947 19 O -0.272 6.272 20 C 0.097 3.903 21 C -0.206 4.206 22 C -0.089 4.089 23 C -0.155 4.155 24 C -0.083 4.083 25 C -0.162 4.162 26 C -0.114 4.114 27 C -0.130 4.130 28 H -0.015 1.015 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.245 0.755 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.428 0.572 35 H 0.171 0.829 36 H 0.154 0.846 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.125 0.875 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.206 -22.649 6.804 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.308 5.308 3 C -0.403 4.403 4 H 0.093 0.907 5 C -0.239 4.239 6 N -0.568 5.568 7 Si 0.792 3.208 8 H -0.181 1.181 9 H -0.213 1.213 10 H -0.228 1.228 11 C -0.001 4.001 12 C 0.255 3.745 13 O -0.418 6.418 14 N -0.319 5.319 15 C 0.053 3.947 16 C -0.141 4.141 17 C -0.126 4.126 18 C 0.010 3.990 19 O -0.185 6.185 20 C 0.055 3.945 21 C -0.225 4.225 22 C -0.107 4.107 23 C -0.173 4.173 24 C -0.100 4.100 25 C -0.180 4.180 26 C -0.133 4.133 27 C -0.151 4.151 28 H 0.003 0.997 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.267 0.733 35 H 0.189 0.811 36 H 0.172 0.828 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.595 -21.924 7.540 26.384 hybrid contribution 0.043 1.453 0.135 1.460 sum 12.638 -20.471 7.674 25.252 Atomic orbital electron populations 1.20557 0.82852 0.97492 0.96156 1.43905 1.01993 1.01121 1.83831 1.19479 1.05554 0.88367 1.26895 0.90698 1.26146 0.98542 1.02936 0.96301 1.70242 1.23383 1.29499 1.33668 0.85261 0.78696 0.80010 0.76803 1.18136 1.21332 1.22792 1.21362 0.99679 0.89427 0.89640 1.23954 0.75719 0.79164 0.95657 1.90740 1.50191 1.53282 1.47603 1.43995 1.56218 1.25444 1.06194 1.18161 0.97618 0.93215 0.85658 1.21077 1.02345 0.93172 0.97487 1.21387 0.99399 1.00394 0.91399 1.18597 1.05261 0.91866 0.83259 1.84370 1.32321 1.74718 1.27092 1.19587 0.84169 0.95445 0.95332 1.21427 0.94549 1.06190 1.00293 1.21293 0.96210 0.95707 0.97446 1.21486 1.00472 1.01673 0.93679 1.21343 0.91169 0.96815 1.00719 1.20728 1.00230 1.02642 0.94413 1.21116 1.00594 0.95141 0.96410 1.21092 1.01346 1.00136 0.92547 0.99671 0.95313 0.94292 0.94567 0.87929 0.87094 0.73266 0.81124 0.82821 0.86059 0.83806 0.83081 0.82437 0.84532 0.85669 0.87229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.76 9.04 127.77 1.16 9.92 16 2 N -0.59 -29.23 2.38 -731.32 -1.74 -30.97 16 3 C -0.27 -14.99 9.55 84.03 0.80 -14.19 16 4 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 5 C -0.04 -2.45 5.16 84.86 0.44 -2.01 16 6 N -0.92 -57.90 11.07 21.65 0.24 -57.66 16 7 Si 0.96 46.29 29.56 68.60 2.03 48.31 16 8 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 9 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 10 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 11 C 0.13 4.71 6.19 85.63 0.53 5.24 16 12 C 0.47 18.37 7.74 87.66 0.68 19.05 16 13 O -0.54 -28.67 13.90 -3.06 -0.04 -28.71 16 14 N -0.67 -18.59 5.34 -303.39 -1.62 -20.21 16 15 C 0.15 4.41 6.30 38.12 0.24 4.65 16 16 C -0.12 -2.63 9.96 22.38 0.22 -2.41 16 17 C -0.11 -2.44 9.06 22.36 0.20 -2.23 16 18 C 0.05 1.48 4.35 22.52 0.10 1.58 16 19 O -0.27 -7.66 9.98 -36.17 -0.36 -8.02 16 20 C 0.10 2.33 6.60 22.52 0.15 2.48 16 21 C -0.21 -4.47 8.96 22.37 0.20 -4.27 16 22 C -0.09 -1.47 10.04 22.25 0.22 -1.25 16 23 C -0.16 -2.13 10.04 22.28 0.22 -1.91 16 24 C -0.08 -1.19 10.04 22.25 0.22 -0.97 16 25 C -0.16 -3.15 9.99 22.37 0.22 -2.93 16 26 C -0.11 -3.66 9.98 22.35 0.22 -3.44 16 27 C -0.13 -4.68 8.69 22.38 0.19 -4.48 16 28 H -0.02 -0.88 7.74 -2.38 -0.02 -0.90 16 29 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 30 H 0.04 1.58 7.96 -2.39 -0.02 1.56 16 31 H 0.25 15.00 8.31 -92.70 -0.77 14.22 16 32 H 0.10 3.20 8.04 -2.39 -0.02 3.18 16 33 H 0.11 3.10 7.94 -2.39 -0.02 3.08 16 34 H 0.43 7.51 8.82 -92.71 -0.82 6.69 16 35 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 36 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.12 2.77 6.46 -2.91 -0.02 2.75 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 41 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.13 3.97 8.06 -2.91 -0.02 3.95 16 43 H 0.11 4.82 6.26 -2.91 -0.02 4.80 16 Total: -1.00 -80.63 368.22 4.75 -75.88 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.22 Total: 18.55 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.03 Total: 2.83 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -3.12 Total: -108.84 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.40 Total: -36.73 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Total: -80.63 4.75 -75.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120782096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.640 kcal (2) G-P(sol) polarization free energy of solvation -80.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds