Wall clock time and date at job start Tue Mar 31 2020 14:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 119.99484 * 2 1 4 4 H 1.08001 * 120.00075 * 202.39942 * 3 2 1 5 5 C 1.38948 * 120.00528 * 22.40995 * 3 2 1 6 6 N 1.31416 * 119.99743 * 11.60151 * 5 3 2 7 7 Si 1.86794 * 120.00522 * 191.60560 * 5 3 2 8 8 H 1.48505 * 109.46791 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47379 * 119.99375 * 7 5 3 10 10 H 1.48502 * 109.47401 * 239.99699 * 7 5 3 11 11 C 1.34773 * 120.00347 * 180.02562 * 2 1 3 12 12 O 1.21285 * 120.00129 * 180.02562 * 11 2 1 13 13 C 1.50709 * 119.99933 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.46906 * 180.02562 * 13 11 2 15 15 N 1.46511 * 109.46752 * 179.97438 * 14 13 11 16 16 C 1.34773 * 119.99779 * 179.97438 * 15 14 13 17 17 O 1.21566 * 120.00147 * 0.02562 * 16 15 14 18 18 C 1.47773 * 120.00131 * 180.02562 * 16 15 14 19 19 C 1.40662 * 119.74377 * 0.27645 * 18 16 15 20 20 C 1.35727 * 120.84430 * 180.27922 * 19 18 16 21 21 C 1.40706 * 120.01815 * 359.70283 * 20 19 18 22 22 C 1.40488 * 121.04036 * 180.02562 * 21 20 19 23 23 C 1.36140 * 119.71852 * 180.02562 * 22 21 20 24 24 C 1.39371 * 121.00773 * 359.97438 * 23 22 21 25 25 C 1.36084 * 120.95577 * 359.97438 * 24 23 22 26 26 C 1.40651 * 119.66304 * 0.02562 * 25 24 23 27 27 C 1.38486 * 119.74967 * 180.02562 * 18 16 15 28 28 H 1.08996 * 109.47172 * 272.15108 * 1 2 3 29 29 H 1.08992 * 109.47489 * 32.15384 * 1 2 3 30 30 H 1.09007 * 109.46735 * 152.15665 * 1 2 3 31 31 H 0.96997 * 119.99995 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.46809 * 59.99969 * 13 11 2 33 33 H 1.09003 * 109.46868 * 300.00289 * 13 11 2 34 34 H 1.09007 * 109.47457 * 60.00482 * 14 13 11 35 35 H 1.08995 * 109.47589 * 300.00042 * 14 13 11 36 36 H 0.96992 * 120.00010 * 0.02562 * 15 14 13 37 37 H 1.07992 * 119.57679 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.98897 * 179.72084 * 20 19 18 39 39 H 1.07996 * 120.14170 * 0.04444 * 22 21 20 40 40 H 1.07994 * 119.49388 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.51391 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.16533 * 180.02562 * 25 24 23 43 43 H 1.07991 * 120.27820 * 0.02562 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2227 -0.3564 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2706 1.0998 7 14 2.3332 4.0079 0.1642 8 1 3.6078 3.8207 -0.5746 9 1 1.4182 4.8621 -0.6349 10 1 2.6090 4.6626 1.4682 11 6 2.1390 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 6 2.3798 -3.6351 -0.0005 15 7 1.6473 -4.9040 0.0001 16 6 2.3212 -6.0711 -0.0003 17 8 3.5369 -6.0711 -0.0007 18 6 1.5824 -7.3509 -0.0003 19 6 0.1758 -7.3448 -0.0057 20 6 -0.5252 -8.5070 -0.0001 21 6 0.1545 -9.7390 0.0050 22 6 -0.5495 -10.9547 0.0103 23 6 0.1354 -12.1312 0.0157 24 6 1.5290 -12.1507 0.0154 25 6 2.2452 -10.9936 0.0093 26 6 1.5724 -9.7585 0.0037 27 6 2.2802 -8.5471 -0.0002 28 1 -0.3633 0.0386 1.0269 29 1 -0.3634 0.8700 -0.5469 30 1 -0.3633 -0.9088 -0.4800 31 1 -0.0403 3.0789 1.4203 32 1 0.7585 -2.5299 -0.8903 33 1 0.7591 -2.5303 0.8897 34 1 3.0065 -3.5774 0.8895 35 1 3.0065 -3.5774 -0.8904 36 1 0.6773 -4.9040 0.0000 37 1 -0.3531 -6.4032 -0.0094 38 1 -1.6050 -8.4861 0.0002 39 1 -1.6295 -10.9560 0.0098 40 1 -0.4094 -13.0636 0.0193 41 1 2.0479 -13.0979 0.0202 42 1 3.3249 -11.0236 0.0088 43 1 3.3601 -8.5476 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120857433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:44 Heat of formation + Delta-G solvation = -21.541733 kcal Electronic energy + Delta-G solvation = -25544.282857 eV Core-core repulsion = 21747.399923 eV Total energy + Delta-G solvation = -3796.882934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.83691 -39.48345 -38.47773 -36.48354 -35.23030 -34.54028 -33.05381 -31.79394 -31.25791 -29.88295 -29.53028 -26.40780 -25.28211 -24.22526 -23.53407 -22.64721 -22.17476 -20.86609 -19.06883 -17.99254 -17.60159 -16.98672 -16.86759 -16.24116 -15.80285 -15.59667 -15.13573 -14.97127 -14.59983 -14.35951 -14.20041 -13.97857 -13.83365 -13.75409 -13.47195 -13.41595 -13.09358 -12.40431 -12.26952 -11.81493 -11.64982 -11.58087 -11.51935 -11.36179 -11.20481 -11.16288 -10.97195 -10.87743 -10.33463 -10.32994 -10.24564 -9.97285 -9.07985 -9.05684 -8.88037 -8.45310 -8.25552 -7.71342 -6.33695 -3.90065 0.06926 0.49548 1.64416 2.28837 3.12737 3.13988 3.19812 3.24976 3.32478 3.83016 3.85095 4.13081 4.22303 4.43157 4.44534 4.59746 4.71977 4.86575 4.87751 4.93196 4.95481 5.01674 5.09695 5.30530 5.43855 5.52730 5.54099 5.69146 5.70190 5.77723 5.83380 5.94321 6.00902 6.13170 6.18639 6.25870 6.32207 6.35451 6.42964 6.55688 6.59972 6.84019 7.18519 7.51556 7.55332 8.10484 8.22231 8.45736 9.16471 9.39766 9.94494 10.70159 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.038196 B = 0.001881 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.892886 B =14878.677772 C =15538.040556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.305 4.305 4 H 0.100 0.900 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.927 3.073 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.448 3.552 12 O -0.587 6.587 13 C -0.142 4.142 14 C 0.138 3.862 15 N -0.723 5.723 16 C 0.553 3.447 17 O -0.535 6.535 18 C -0.130 4.130 19 C -0.089 4.089 20 C -0.112 4.112 21 C -0.036 4.036 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.123 4.123 25 C -0.094 4.094 26 C -0.063 4.063 27 C -0.036 4.036 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.397 0.603 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 -26.103 -2.153 27.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.165 5.165 3 C -0.433 4.433 4 H 0.118 0.882 5 C -0.174 4.174 6 N -0.524 5.524 7 Si 0.754 3.246 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.207 1.207 11 C 0.235 3.765 12 O -0.472 6.472 13 C -0.183 4.183 14 C 0.015 3.985 15 N -0.375 5.375 16 C 0.340 3.660 17 O -0.413 6.413 18 C -0.133 4.133 19 C -0.108 4.108 20 C -0.129 4.129 21 C -0.036 4.036 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.112 4.112 26 C -0.063 4.063 27 C -0.055 4.055 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.232 0.768 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.149 0.851 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.604 -25.884 -2.071 26.794 hybrid contribution -0.552 0.973 0.007 1.119 sum -7.156 -24.911 -2.064 26.001 Atomic orbital electron populations 1.21518 0.81129 0.98798 1.01738 1.43595 1.05549 1.04772 1.62596 1.19728 0.99531 0.83748 1.40264 0.88243 1.25351 0.96524 1.00134 0.95379 1.70002 1.17431 1.29200 1.35783 0.85847 0.79284 0.81327 0.78172 1.19189 1.20676 1.20728 1.19738 0.87960 0.84530 0.84222 1.90551 1.13862 1.87060 1.55761 1.21698 0.99012 0.94289 1.03270 1.21120 0.93864 0.79552 1.03996 1.46020 1.10357 1.06186 1.74932 1.18207 0.87273 0.83647 0.76868 1.90801 1.13345 1.87537 1.49576 1.19952 0.93729 0.93667 1.05945 1.20934 0.92756 0.98871 0.98222 1.20924 1.00021 0.91158 1.00838 1.18224 0.92546 0.94046 0.98810 1.21064 0.99905 0.91557 1.00452 1.20933 0.94445 0.98235 0.99060 1.20882 0.94234 0.98405 1.00532 1.21138 1.00163 0.91390 0.98551 1.18071 0.92709 0.93663 1.01859 1.21528 1.00666 0.90023 0.93282 0.92349 0.91260 0.95542 0.92314 0.89924 0.89718 0.90453 0.90515 0.76786 0.85363 0.84917 0.85342 0.85837 0.85759 0.85144 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 8.52 59.85 0.51 2.91 16 2 N -0.45 -11.26 3.02 -122.19 -0.37 -11.63 16 3 C -0.30 -8.48 9.29 -14.94 -0.14 -8.62 16 4 H 0.10 2.92 7.41 -52.49 -0.39 2.53 16 5 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 6 N -0.88 -23.35 10.62 55.50 0.59 -22.76 16 7 Si 0.93 20.76 29.57 -169.99 -5.03 15.74 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 9 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.45 10.69 7.63 -10.98 -0.08 10.60 16 12 O -0.59 -16.27 15.67 5.55 0.09 -16.18 16 13 C -0.14 -2.41 4.34 -27.88 -0.12 -2.53 16 14 C 0.14 2.33 4.96 -4.04 -0.02 2.31 16 15 N -0.72 -9.64 5.50 -61.27 -0.34 -9.97 16 16 C 0.55 8.17 7.76 -12.36 -0.10 8.07 16 17 O -0.53 -10.01 16.30 5.31 0.09 -9.93 16 18 C -0.13 -1.53 5.87 -104.99 -0.62 -2.15 16 19 C -0.09 -0.81 9.44 -39.57 -0.37 -1.18 16 20 C -0.11 -0.91 9.73 -39.55 -0.38 -1.29 16 21 C -0.04 -0.33 5.75 -106.76 -0.61 -0.94 16 22 C -0.11 -0.80 9.76 -39.49 -0.39 -1.19 16 23 C -0.11 -0.71 9.95 -39.91 -0.40 -1.10 16 24 C -0.12 -0.84 9.95 -39.93 -0.40 -1.23 16 25 C -0.09 -0.77 9.77 -39.45 -0.39 -1.15 16 26 C -0.06 -0.63 5.74 -106.85 -0.61 -1.24 16 27 C -0.04 -0.41 9.34 -38.72 -0.36 -0.77 16 28 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 29 H 0.07 1.58 7.06 -51.93 -0.37 1.21 16 30 H 0.03 0.45 6.36 -51.93 -0.33 0.12 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.08 1.20 7.40 -51.93 -0.38 0.81 16 33 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 34 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 35 H 0.08 1.45 8.10 -51.93 -0.42 1.02 16 36 H 0.40 3.90 6.45 -40.82 -0.26 3.63 16 37 H 0.13 0.86 6.34 -52.49 -0.33 0.53 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 42 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.14 1.60 7.61 -52.49 -0.40 1.20 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -34.54 363.98 -9.42 -43.96 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.37 Total: 4.13 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -4.57 Total: 1.18 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -0.12 Total: -44.37 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: 0.17 Total: -26.11 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.54 -9.42 -43.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120857433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.413 kcal (2) G-P(sol) polarization free energy of solvation -34.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds