Wall clock time and date at job start Tue Mar 31 2020 14:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37094 * 119.99484 * 2 1 4 4 H 1.08001 * 120.00075 * 202.39942 * 3 2 1 5 5 C 1.38948 * 120.00528 * 22.40995 * 3 2 1 6 6 N 1.31416 * 119.99743 * 11.60151 * 5 3 2 7 7 Si 1.86794 * 120.00522 * 191.60560 * 5 3 2 8 8 H 1.48505 * 109.46791 * 359.97438 * 7 5 3 9 9 H 1.48506 * 109.47379 * 119.99375 * 7 5 3 10 10 H 1.48502 * 109.47401 * 239.99699 * 7 5 3 11 11 C 1.34773 * 120.00347 * 180.02562 * 2 1 3 12 12 O 1.21285 * 120.00129 * 180.02562 * 11 2 1 13 13 C 1.50709 * 119.99933 * 359.97438 * 11 2 1 14 14 C 1.52995 * 109.46906 * 180.02562 * 13 11 2 15 15 N 1.46511 * 109.46752 * 179.97438 * 14 13 11 16 16 C 1.34773 * 119.99779 * 179.97438 * 15 14 13 17 17 O 1.21566 * 120.00147 * 0.02562 * 16 15 14 18 18 C 1.47773 * 120.00131 * 180.02562 * 16 15 14 19 19 C 1.40662 * 119.74377 * 0.27645 * 18 16 15 20 20 C 1.35727 * 120.84430 * 180.27922 * 19 18 16 21 21 C 1.40706 * 120.01815 * 359.70283 * 20 19 18 22 22 C 1.40488 * 121.04036 * 180.02562 * 21 20 19 23 23 C 1.36140 * 119.71852 * 180.02562 * 22 21 20 24 24 C 1.39371 * 121.00773 * 359.97438 * 23 22 21 25 25 C 1.36084 * 120.95577 * 359.97438 * 24 23 22 26 26 C 1.40651 * 119.66304 * 0.02562 * 25 24 23 27 27 C 1.38486 * 119.74967 * 180.02562 * 18 16 15 28 28 H 1.08996 * 109.47172 * 272.15108 * 1 2 3 29 29 H 1.08992 * 109.47489 * 32.15384 * 1 2 3 30 30 H 1.09007 * 109.46735 * 152.15665 * 1 2 3 31 31 H 0.96997 * 119.99995 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.46809 * 59.99969 * 13 11 2 33 33 H 1.09003 * 109.46868 * 300.00289 * 13 11 2 34 34 H 1.09007 * 109.47457 * 60.00482 * 14 13 11 35 35 H 1.08995 * 109.47589 * 300.00042 * 14 13 11 36 36 H 0.96992 * 120.00010 * 0.02562 * 15 14 13 37 37 H 1.07992 * 119.57679 * 359.97438 * 19 18 16 38 38 H 1.08001 * 119.98897 * 179.72084 * 20 19 18 39 39 H 1.07996 * 120.14170 * 0.04444 * 22 21 20 40 40 H 1.07994 * 119.49388 * 180.02562 * 23 22 21 41 41 H 1.08003 * 119.51391 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.16533 * 180.02562 * 25 24 23 43 43 H 1.07991 * 120.27820 * 0.02562 * 27 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1693 1.2227 -0.3564 5 6 1.5344 2.3452 0.4587 6 7 0.3896 2.2706 1.0998 7 14 2.3332 4.0079 0.1642 8 1 3.6078 3.8207 -0.5746 9 1 1.4182 4.8621 -0.6349 10 1 2.6090 4.6626 1.4682 11 6 2.1390 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0001 13 6 1.3855 -2.4723 -0.0005 14 6 2.3798 -3.6351 -0.0005 15 7 1.6473 -4.9040 0.0001 16 6 2.3212 -6.0711 -0.0003 17 8 3.5369 -6.0711 -0.0007 18 6 1.5824 -7.3509 -0.0003 19 6 0.1758 -7.3448 -0.0057 20 6 -0.5252 -8.5070 -0.0001 21 6 0.1545 -9.7390 0.0050 22 6 -0.5495 -10.9547 0.0103 23 6 0.1354 -12.1312 0.0157 24 6 1.5290 -12.1507 0.0154 25 6 2.2452 -10.9936 0.0093 26 6 1.5724 -9.7585 0.0037 27 6 2.2802 -8.5471 -0.0002 28 1 -0.3633 0.0386 1.0269 29 1 -0.3634 0.8700 -0.5469 30 1 -0.3633 -0.9088 -0.4800 31 1 -0.0403 3.0789 1.4203 32 1 0.7585 -2.5299 -0.8903 33 1 0.7591 -2.5303 0.8897 34 1 3.0065 -3.5774 0.8895 35 1 3.0065 -3.5774 -0.8904 36 1 0.6773 -4.9040 0.0000 37 1 -0.3531 -6.4032 -0.0094 38 1 -1.6050 -8.4861 0.0002 39 1 -1.6295 -10.9560 0.0098 40 1 -0.4094 -13.0636 0.0193 41 1 2.0479 -13.0979 0.0202 42 1 3.3249 -11.0236 0.0088 43 1 3.3601 -8.5476 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120857433.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:43 Heat of formation + Delta-G solvation = -43.478286 kcal Electronic energy + Delta-G solvation = -25545.234097 eV Core-core repulsion = 21747.399923 eV Total energy + Delta-G solvation = -3797.834174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.62300 -40.65495 -40.17269 -37.18468 -36.87156 -36.20054 -33.72128 -33.68460 -32.39938 -30.93875 -30.18028 -28.23209 -26.80503 -25.55306 -24.17686 -23.89095 -22.84525 -21.95947 -20.67338 -19.09485 -18.86709 -18.25447 -18.09935 -17.44961 -17.03915 -16.88601 -16.45834 -16.02410 -15.88396 -15.84362 -15.60353 -14.95268 -14.84847 -14.55733 -14.39891 -14.32166 -14.16127 -14.03439 -13.59605 -13.29494 -13.12128 -12.94676 -12.86572 -12.63776 -12.49292 -12.24071 -12.18772 -12.15217 -12.12178 -11.77831 -11.18640 -11.02937 -10.98000 -10.40420 -10.27070 -9.69522 -9.62099 -8.88365 -8.34116 -5.99171 -0.63282 -0.14345 0.97863 1.34884 1.40525 1.51939 1.53934 1.94373 2.01555 2.29734 2.31726 3.08391 3.13807 3.14820 3.57231 3.64589 3.81878 3.87859 4.01226 4.08585 4.11882 4.14517 4.21278 4.33892 4.42863 4.47587 4.51198 4.75155 4.82896 4.88614 4.92109 4.94659 5.09791 5.11451 5.15953 5.25554 5.27455 5.34353 5.43874 5.44887 5.57971 5.59960 5.81234 6.02917 6.08563 6.44858 6.48713 7.11929 7.16503 7.46903 8.01883 8.67382 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.038196 B = 0.001881 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.892886 B =14878.677772 C =15538.040556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.462 5.462 3 C -0.345 4.345 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.895 5.895 7 Si 0.988 3.012 8 H -0.277 1.277 9 H -0.263 1.263 10 H -0.276 1.276 11 C 0.435 3.565 12 O -0.639 6.639 13 C -0.122 4.122 14 C 0.150 3.850 15 N -0.705 5.705 16 C 0.551 3.449 17 O -0.587 6.587 18 C -0.145 4.145 19 C -0.097 4.097 20 C -0.102 4.102 21 C -0.051 4.051 22 C -0.115 4.115 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.116 4.116 26 C -0.081 4.081 27 C -0.051 4.051 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.274 0.726 32 H 0.122 0.878 33 H 0.115 0.885 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.418 0.582 37 H 0.154 0.846 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.626 -27.930 -2.289 30.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.181 5.181 3 C -0.473 4.473 4 H 0.086 0.914 5 C -0.204 4.204 6 N -0.533 5.533 7 Si 0.811 3.189 8 H -0.202 1.202 9 H -0.188 1.188 10 H -0.201 1.201 11 C 0.225 3.775 12 O -0.527 6.527 13 C -0.162 4.162 14 C 0.026 3.974 15 N -0.357 5.357 16 C 0.340 3.660 17 O -0.468 6.468 18 C -0.148 4.148 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.051 4.051 22 C -0.133 4.133 23 C -0.127 4.127 24 C -0.137 4.137 25 C -0.134 4.134 26 C -0.081 4.081 27 C -0.070 4.070 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.258 0.742 37 H 0.172 0.828 38 H 0.185 0.815 39 H 0.174 0.826 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.154 0.846 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.384 -27.719 -2.204 29.682 hybrid contribution 0.581 1.371 0.070 1.491 sum -9.802 -26.348 -2.133 28.193 Atomic orbital electron populations 1.21528 0.78826 1.00607 1.01444 1.43874 1.07074 1.04504 1.62622 1.19633 0.99173 0.85958 1.42533 0.91392 1.26046 0.97034 1.02718 0.94569 1.70060 1.17747 1.30350 1.35180 0.84965 0.78282 0.77412 0.78206 1.20154 1.18813 1.20144 1.20873 0.87839 0.86368 0.82450 1.90518 1.16513 1.88115 1.57556 1.21565 0.98450 0.89739 1.06431 1.20705 0.93848 0.81381 1.01472 1.45706 1.11226 1.04504 1.74311 1.18770 0.86850 0.84850 0.75547 1.90769 1.15756 1.88287 1.52000 1.19791 0.95044 0.91754 1.08242 1.21132 0.91245 1.00629 0.98522 1.21316 1.01606 0.90224 0.98775 1.18582 0.92210 0.95557 0.98772 1.21419 1.01351 0.90848 0.99667 1.21354 0.94381 0.99403 0.97529 1.21249 0.94862 0.98773 0.98790 1.21330 1.00835 0.91533 0.99664 1.18241 0.93664 0.93517 1.02655 1.21540 1.00234 0.91014 0.94226 0.93303 0.93042 0.90367 0.91663 0.86044 0.86722 0.93441 0.93035 0.74242 0.82821 0.81499 0.82564 0.82948 0.83449 0.84640 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.90 8.52 127.77 1.09 5.99 16 2 N -0.46 -23.48 3.02 -658.90 -1.99 -25.47 16 3 C -0.34 -19.75 9.29 84.04 0.78 -18.97 16 4 H 0.07 4.22 7.41 -2.91 -0.02 4.20 16 5 C 0.00 -0.10 5.11 84.93 0.43 0.34 16 6 N -0.89 -46.75 10.62 21.66 0.23 -46.52 16 7 Si 0.99 42.76 29.57 68.60 2.03 44.79 16 8 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 9 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 10 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 11 C 0.44 21.01 7.63 87.66 0.67 21.68 16 12 O -0.64 -37.12 15.67 -3.04 -0.05 -37.17 16 13 C -0.12 -3.91 4.34 29.85 0.13 -3.78 16 14 C 0.15 5.17 4.96 86.38 0.43 5.60 16 15 N -0.70 -18.27 5.50 -466.02 -2.57 -20.83 16 16 C 0.55 16.77 7.76 86.77 0.67 17.44 16 17 O -0.59 -23.58 16.30 -3.92 -0.06 -23.64 16 18 C -0.15 -3.44 5.87 -20.10 -0.12 -3.56 16 19 C -0.10 -1.55 9.44 22.28 0.21 -1.34 16 20 C -0.10 -1.34 9.73 22.29 0.22 -1.12 16 21 C -0.05 -0.81 5.75 -21.25 -0.12 -0.94 16 22 C -0.12 -1.25 9.76 22.33 0.22 -1.03 16 23 C -0.11 -1.04 9.95 22.05 0.22 -0.82 16 24 C -0.12 -1.36 9.95 22.04 0.22 -1.14 16 25 C -0.12 -1.84 9.77 22.36 0.22 -1.62 16 26 C -0.08 -1.59 5.74 -21.31 -0.12 -1.71 16 27 C -0.05 -1.21 9.34 22.83 0.21 -1.00 16 28 H 0.05 2.10 7.54 -2.39 -0.02 2.08 16 29 H 0.05 2.29 7.06 -2.39 -0.02 2.27 16 30 H 0.08 2.37 6.36 -2.38 -0.02 2.35 16 31 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 32 H 0.12 3.03 7.40 -2.39 -0.02 3.01 16 33 H 0.11 3.08 8.11 -2.39 -0.02 3.06 16 34 H 0.05 1.92 8.10 -2.38 -0.02 1.90 16 35 H 0.05 2.03 8.10 -2.39 -0.02 2.01 16 36 H 0.42 7.05 6.45 -92.71 -0.60 6.46 16 37 H 0.15 1.50 6.34 -2.91 -0.02 1.49 16 38 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 39 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.15 0.56 8.06 -2.91 -0.02 0.54 16 41 H 0.15 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.13 3.24 7.61 -2.92 -0.02 3.22 16 Total: -1.00 -81.08 363.98 3.40 -77.69 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.45 Total: 17.13 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.36 Total: 14.03 kcal Atomic # 7 Polarization: -88.50 SS G_CDS: -4.32 Total: -92.82 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -0.11 Total: -60.81 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -81.08 3.40 -77.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120857433.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.207 kcal (2) G-P(sol) polarization free energy of solvation -81.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds