Wall clock time and date at job start Tue Mar 31 2020 14:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00650 * 2 1 4 4 C 1.38485 * 119.97727 * 0.02562 * 3 2 1 5 5 C 1.39532 * 119.78770 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.12480 * 179.97438 * 5 4 3 7 7 N 5.84228 * 81.27436 * 359.97438 * 2 1 3 8 8 C 1.39661 * 119.75462 * 359.97438 * 5 4 3 9 9 C 1.37953 * 119.95792 * 0.02562 * 8 5 4 10 10 C 1.38298 * 120.21248 * 0.27079 * 9 8 5 11 11 C 1.50696 * 119.87390 * 179.70776 * 10 9 8 12 12 N 1.46898 * 109.46972 * 259.99892 * 11 10 9 13 13 C 1.46903 * 111.00002 * 190.00425 * 12 11 10 14 14 C 1.50698 * 109.47259 * 75.91205 * 13 12 11 15 15 H 1.08001 * 119.99919 * 5.14191 * 14 13 12 16 16 C 1.37875 * 119.99965 * 185.14251 * 14 13 12 17 17 N 1.31516 * 120.00310 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99974 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46991 * 90.00188 * 18 16 14 20 20 H 1.48498 * 109.46974 * 210.00253 * 18 16 14 21 21 H 1.48503 * 109.47031 * 330.00136 * 18 16 14 22 22 C 1.46897 * 111.00068 * 66.04471 * 12 11 10 23 23 C 1.50707 * 109.47079 * 195.92429 * 22 12 11 24 24 C 1.34513 * 125.78459 * 90.00184 * 23 22 12 25 25 C 1.41392 * 106.83724 * 179.97438 * 24 23 22 26 26 C 1.34509 * 106.83730 * 0.02562 * 25 24 23 27 27 O 1.34298 * 125.79072 * 269.69401 * 23 22 12 28 28 H 1.08992 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47186 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.46795 * 59.99863 * 1 2 3 31 31 H 1.08001 * 120.10438 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.02487 * 179.97438 * 8 5 4 33 33 H 1.08006 * 119.89660 * 180.02562 * 9 8 5 34 34 H 1.08999 * 109.47754 * 19.99880 * 11 10 9 35 35 H 1.09007 * 109.47117 * 140.00018 * 11 10 9 36 36 H 1.09000 * 109.46870 * 195.91123 * 13 12 11 37 37 H 1.08993 * 109.47243 * 315.90693 * 13 12 11 38 38 H 0.96997 * 119.99910 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47492 * 315.92832 * 22 12 11 40 40 H 1.09000 * 109.46815 * 75.93173 * 22 12 11 41 41 H 1.07997 * 126.58219 * 0.03857 * 24 23 22 42 42 H 1.08003 * 126.57522 * 179.97438 * 25 24 23 43 43 H 1.08006 * 125.78276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2916 2.3721 0.0005 5 6 1.9293 3.6132 0.0000 6 6 1.1561 4.8185 0.0000 7 7 0.5427 5.7747 -0.0026 8 6 3.3245 3.6755 -0.0005 9 6 4.0660 2.5123 -0.0011 10 6 3.4324 1.2830 -0.0067 11 6 4.2499 0.0171 -0.0139 12 7 4.3122 -0.5177 -1.3807 13 6 4.8944 -1.8664 -1.3922 14 6 3.8738 -2.8584 -0.8969 15 1 2.8661 -2.5347 -0.6820 16 6 4.2264 -4.1793 -0.7183 17 7 3.3358 -5.0450 -0.2856 18 14 5.9691 -4.7394 -1.0907 19 1 6.8025 -4.6099 0.1316 20 1 5.9501 -6.1581 -1.5289 21 1 6.5401 -3.8953 -2.1709 22 6 5.0591 0.3857 -2.2660 23 6 4.7793 0.0260 -3.7025 24 6 3.7883 0.5288 -4.4606 25 6 3.8959 -0.0804 -5.7320 26 6 4.9458 -0.9193 -5.6745 27 8 5.4805 -0.8464 -4.4447 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3173 0.0014 32 1 3.8226 4.6338 -0.0014 33 1 5.1450 2.5616 -0.0011 34 1 5.2586 0.2339 0.3377 35 1 3.7863 -0.7186 0.6434 36 1 5.1898 -2.1259 -2.4088 37 1 5.7692 -1.8901 -0.7424 38 1 3.5841 -5.9741 -0.1596 39 1 4.7483 1.4140 -2.0817 40 1 6.1265 0.2877 -2.0683 41 1 3.0524 1.2585 -4.1567 42 1 3.2570 0.0938 -6.5852 43 1 5.3016 -1.5419 -6.4821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121123044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:03 Heat of formation + Delta-G solvation = 51.495608 kcal Electronic energy + Delta-G solvation = -27501.780905 eV Core-core repulsion = 23708.065108 eV Total energy + Delta-G solvation = -3793.715797 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11253 -40.34148 -37.75454 -37.18501 -36.06471 -32.71436 -32.56245 -31.96553 -30.41063 -30.03277 -27.85101 -27.20225 -26.35318 -24.09374 -22.27713 -22.10022 -21.33222 -20.66361 -19.70141 -19.37327 -17.11470 -16.70818 -16.66788 -16.03135 -15.96469 -15.65840 -15.37199 -14.81781 -14.51246 -14.22339 -14.01982 -13.90124 -13.78349 -13.73591 -13.12041 -12.92852 -12.55994 -12.42478 -12.39665 -12.34201 -12.21487 -11.94949 -11.72569 -11.61335 -11.49350 -11.07259 -10.93846 -10.91932 -10.61488 -10.27700 -9.85688 -9.49374 -9.31196 -8.96455 -8.52688 -8.17127 -8.02217 -7.48742 -6.00548 -3.96242 0.66790 1.34140 2.15386 2.51427 2.85310 3.03257 3.29368 3.38049 3.41937 3.43320 3.47411 3.74383 3.78509 4.45862 4.69123 4.76900 4.93839 4.95456 5.08897 5.17552 5.30591 5.32438 5.34552 5.36302 5.41154 5.51293 5.61239 5.64027 5.74585 5.76501 5.81484 6.09359 6.15663 6.18434 6.30511 6.31465 6.47881 6.50331 6.64638 6.78888 6.88596 6.94260 7.32604 7.54039 7.57223 7.64200 7.80392 7.92663 8.68753 9.15334 9.62256 11.12620 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.004522 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.889933 B = 6190.815798 C = 7558.926308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.276 6.276 3 C 0.159 3.841 4 C -0.170 4.170 5 C -0.002 4.002 6 C 0.262 3.738 7 N -0.428 5.428 8 C -0.111 4.111 9 C -0.086 4.086 10 C -0.072 4.072 11 C 0.102 3.898 12 N -0.509 5.509 13 C 0.161 3.839 14 C -0.500 4.500 15 H 0.088 0.912 16 C 0.069 3.931 17 N -0.901 5.901 18 Si 0.866 3.134 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.123 3.877 23 C 0.018 3.982 24 C -0.202 4.202 25 C -0.216 4.216 26 C -0.049 4.049 27 O -0.174 6.174 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.037 0.963 35 H 0.109 0.891 36 H 0.033 0.967 37 H -0.012 1.012 38 H 0.262 0.738 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 13.855 -2.546 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.187 6.187 3 C 0.111 3.889 4 C -0.191 4.191 5 C -0.005 4.005 6 C -0.053 4.053 7 N -0.103 5.103 8 C -0.132 4.132 9 C -0.105 4.105 10 C -0.074 4.074 11 C -0.025 4.025 12 N -0.234 5.234 13 C 0.035 3.965 14 C -0.538 4.538 15 H 0.106 0.894 16 C -0.132 4.132 17 N -0.540 5.540 18 Si 0.694 3.306 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.005 4.005 23 C -0.032 4.032 24 C -0.222 4.222 25 C -0.235 4.235 26 C -0.117 4.117 27 O -0.070 6.070 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.155 0.845 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.051 0.949 37 H 0.006 0.994 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.159 0.841 42 H 0.159 0.841 43 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -0.406 14.718 -2.567 14.945 hybrid contribution 1.381 -0.650 -0.173 1.536 sum 0.975 14.068 -2.740 14.366 Atomic orbital electron populations 1.23113 0.78830 1.04622 1.00452 1.86440 1.20652 1.24637 1.87009 1.18654 0.91716 0.84396 0.94110 1.21193 1.00322 0.90698 1.06918 1.15644 0.91752 0.86546 1.06600 1.25779 0.93192 0.92919 0.93398 1.81233 1.08867 1.10937 1.09257 1.20933 0.91297 0.99068 1.01871 1.20877 1.00191 0.90465 0.98976 1.19693 0.91200 0.96049 1.00461 1.20933 0.96524 0.93059 0.91943 1.61979 1.52290 1.02680 1.06416 1.20291 0.94204 0.85121 0.96856 1.21045 0.98630 0.91376 1.42766 0.89372 1.24857 0.96575 0.96695 0.95044 1.69883 1.33861 1.03335 1.46946 0.87000 0.86201 0.78276 0.79161 1.20393 1.21285 1.19126 1.20606 0.96881 0.97741 0.85239 1.22282 0.94259 0.92815 0.93894 1.21395 1.01123 1.05843 0.93844 1.21725 1.00945 1.01686 0.99135 1.23866 0.97796 1.03496 0.86575 1.84046 1.49708 1.51500 1.21723 0.87684 0.93125 0.92896 0.84740 0.85189 0.84521 0.94520 0.87337 0.94909 0.99429 0.92839 0.88593 0.94040 0.84067 0.84093 0.78810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.29 16 2 O -0.28 -4.41 9.71 -19.46 -0.19 -4.60 16 3 C 0.16 2.19 6.65 -39.28 -0.26 1.93 16 4 C -0.17 -1.94 8.74 -39.01 -0.34 -2.28 16 5 C 0.00 -0.02 5.73 -106.96 -0.61 -0.63 16 6 C 0.26 3.09 15.33 -22.47 -0.34 2.75 16 7 N -0.43 -5.84 18.54 41.84 0.78 -5.07 16 8 C -0.11 -1.05 9.75 -39.15 -0.38 -1.44 16 9 C -0.09 -0.89 8.29 -39.66 -0.33 -1.22 16 10 C -0.07 -0.97 4.65 -104.39 -0.49 -1.46 16 11 C 0.10 1.69 4.58 -4.98 -0.02 1.66 16 12 N -0.51 -9.72 4.36 -238.97 -1.04 -10.76 16 13 C 0.16 3.74 3.65 -4.98 -0.02 3.72 16 14 C -0.50 -13.66 9.12 -34.44 -0.31 -13.98 16 15 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 18 Si 0.87 21.20 27.37 -169.99 -4.65 16.55 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 22 C 0.12 1.98 5.36 -4.97 -0.03 1.95 16 23 C 0.02 0.32 6.12 -35.62 -0.22 0.10 16 24 C -0.20 -3.25 10.81 -39.70 -0.43 -3.68 16 25 C -0.22 -3.17 10.91 -39.70 -0.43 -3.61 16 26 C -0.05 -0.74 12.09 29.41 0.36 -0.38 16 27 O -0.17 -3.17 9.80 5.73 0.06 -3.12 16 28 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 31 H 0.13 1.32 6.29 -52.49 -0.33 0.99 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.14 1.11 8.03 -52.48 -0.42 0.69 16 34 H 0.04 0.54 7.97 -51.93 -0.41 0.12 16 35 H 0.11 2.10 7.14 -51.93 -0.37 1.73 16 36 H 0.03 0.81 5.87 -51.93 -0.30 0.51 16 37 H -0.01 -0.28 7.14 -51.93 -0.37 -0.65 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.10 1.28 5.86 -51.93 -0.30 0.98 16 40 H 0.04 0.64 8.05 -51.93 -0.42 0.22 16 41 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.14 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 370.12 15.07 5.58 5.58 Total: -1.00 -32.81 370.12 -7.09 -39.90 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -5.43 Total: 1.16 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.97 Total: -13.42 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.51 Total: -42.06 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.13 Total: -7.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.65 Total: 16.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.81 -7.09 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121123044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.397 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds