Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00650 * 2 1 4 4 C 1.38485 * 119.97727 * 0.02562 * 3 2 1 5 5 C 1.39532 * 119.78770 * 180.02562 * 4 3 2 6 6 C 1.43199 * 120.12480 * 179.97438 * 5 4 3 7 7 N 5.84228 * 81.27436 * 359.97438 * 2 1 3 8 8 C 1.39661 * 119.75462 * 359.97438 * 5 4 3 9 9 C 1.37953 * 119.95792 * 0.02562 * 8 5 4 10 10 C 1.38298 * 120.21248 * 0.27079 * 9 8 5 11 11 C 1.50696 * 119.87390 * 179.70776 * 10 9 8 12 12 N 1.46898 * 109.46972 * 259.99892 * 11 10 9 13 13 C 1.46903 * 111.00002 * 190.00425 * 12 11 10 14 14 C 1.50698 * 109.47259 * 75.91205 * 13 12 11 15 15 H 1.08001 * 119.99919 * 5.14191 * 14 13 12 16 16 C 1.37875 * 119.99965 * 185.14251 * 14 13 12 17 17 N 1.31516 * 120.00310 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99974 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46991 * 90.00188 * 18 16 14 20 20 H 1.48498 * 109.46974 * 210.00253 * 18 16 14 21 21 H 1.48503 * 109.47031 * 330.00136 * 18 16 14 22 22 C 1.46897 * 111.00068 * 66.04471 * 12 11 10 23 23 C 1.50707 * 109.47079 * 195.92429 * 22 12 11 24 24 C 1.34513 * 125.78459 * 90.00184 * 23 22 12 25 25 C 1.41392 * 106.83724 * 179.97438 * 24 23 22 26 26 C 1.34509 * 106.83730 * 0.02562 * 25 24 23 27 27 O 1.34298 * 125.79072 * 269.69401 * 23 22 12 28 28 H 1.08992 * 109.47295 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47186 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.46795 * 59.99863 * 1 2 3 31 31 H 1.08001 * 120.10438 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.02487 * 179.97438 * 8 5 4 33 33 H 1.08006 * 119.89660 * 180.02562 * 9 8 5 34 34 H 1.08999 * 109.47754 * 19.99880 * 11 10 9 35 35 H 1.09007 * 109.47117 * 140.00018 * 11 10 9 36 36 H 1.09000 * 109.46870 * 195.91123 * 13 12 11 37 37 H 1.08993 * 109.47243 * 315.90693 * 13 12 11 38 38 H 0.96997 * 119.99910 * 180.02562 * 17 16 14 39 39 H 1.08996 * 109.47492 * 315.92832 * 22 12 11 40 40 H 1.09000 * 109.46815 * 75.93173 * 22 12 11 41 41 H 1.07997 * 126.58219 * 0.03857 * 24 23 22 42 42 H 1.08003 * 126.57522 * 179.97438 * 25 24 23 43 43 H 1.08006 * 125.78276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2916 2.3721 0.0005 5 6 1.9293 3.6132 0.0000 6 6 1.1561 4.8185 0.0000 7 7 0.5427 5.7747 -0.0026 8 6 3.3245 3.6755 -0.0005 9 6 4.0660 2.5123 -0.0011 10 6 3.4324 1.2830 -0.0067 11 6 4.2499 0.0171 -0.0139 12 7 4.3122 -0.5177 -1.3807 13 6 4.8944 -1.8664 -1.3922 14 6 3.8738 -2.8584 -0.8969 15 1 2.8661 -2.5347 -0.6820 16 6 4.2264 -4.1793 -0.7183 17 7 3.3358 -5.0450 -0.2856 18 14 5.9691 -4.7394 -1.0907 19 1 6.8025 -4.6099 0.1316 20 1 5.9501 -6.1581 -1.5289 21 1 6.5401 -3.8953 -2.1709 22 6 5.0591 0.3857 -2.2660 23 6 4.7793 0.0260 -3.7025 24 6 3.7883 0.5288 -4.4606 25 6 3.8959 -0.0804 -5.7320 26 6 4.9458 -0.9193 -5.6745 27 8 5.4805 -0.8464 -4.4447 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2129 2.3173 0.0014 32 1 3.8226 4.6338 -0.0014 33 1 5.1450 2.5616 -0.0011 34 1 5.2586 0.2339 0.3377 35 1 3.7863 -0.7186 0.6434 36 1 5.1898 -2.1259 -2.4088 37 1 5.7692 -1.8901 -0.7424 38 1 3.5841 -5.9741 -0.1596 39 1 4.7483 1.4140 -2.0817 40 1 6.1265 0.2877 -2.0683 41 1 3.0524 1.2585 -4.1567 42 1 3.2570 0.0938 -6.5852 43 1 5.3016 -1.5419 -6.4821 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121123044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = 30.885521 kcal Electronic energy + Delta-G solvation = -27502.674626 eV Core-core repulsion = 23708.065108 eV Total energy + Delta-G solvation = -3794.609518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.32712 -41.32484 -38.81230 -38.46069 -37.13810 -34.67786 -33.80742 -33.13317 -31.60790 -31.13263 -29.50585 -28.18007 -27.54168 -25.54795 -23.51825 -23.16946 -22.53043 -22.06493 -21.00869 -20.31994 -18.93198 -18.13048 -17.68367 -17.28598 -16.92884 -16.85983 -16.48052 -16.37641 -15.86417 -15.40111 -15.24835 -15.03420 -14.94486 -14.78412 -14.45214 -14.32556 -13.93423 -13.68188 -13.58176 -13.50737 -13.33687 -13.24860 -13.08669 -12.78404 -12.70469 -12.50117 -12.35695 -12.08885 -11.87619 -11.79365 -11.68726 -11.40901 -10.72266 -10.67160 -9.90490 -9.29826 -9.08293 -8.93870 -8.19283 -6.19189 -0.25992 0.47676 0.93870 1.34992 1.38210 1.48528 1.57985 1.83167 1.92662 2.29418 2.39377 2.53780 2.80881 2.86341 3.14514 3.46731 3.80180 3.89466 3.96250 4.14197 4.20614 4.23685 4.27956 4.41983 4.44882 4.47337 4.54971 4.58029 4.65494 4.75495 4.81787 4.89793 4.98264 5.02803 5.14108 5.17903 5.21572 5.32157 5.33868 5.50327 5.65934 5.76083 5.76524 6.03773 6.37244 6.40452 6.42133 6.59486 6.69000 6.90756 7.43097 8.97411 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010714 B = 0.004522 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.889933 B = 6190.815798 C = 7558.926308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.319 6.319 3 C 0.137 3.863 4 C -0.164 4.164 5 C 0.000 4.000 6 C 0.284 3.716 7 N -0.460 5.460 8 C -0.093 4.093 9 C -0.074 4.074 10 C -0.088 4.088 11 C 0.108 3.892 12 N -0.525 5.525 13 C 0.175 3.825 14 C -0.497 4.497 15 H 0.045 0.955 16 C 0.010 3.990 17 N -0.948 5.948 18 Si 0.934 3.066 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.256 1.256 22 C 0.127 3.873 23 C -0.013 4.013 24 C -0.207 4.207 25 C -0.223 4.223 26 C -0.056 4.056 27 O -0.201 6.201 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.021 0.979 37 H -0.008 1.008 38 H 0.263 0.737 39 H 0.125 0.875 40 H 0.050 0.950 41 H 0.153 0.847 42 H 0.168 0.832 43 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.484 16.261 -3.459 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.232 6.232 3 C 0.091 3.909 4 C -0.185 4.185 5 C -0.004 4.004 6 C -0.031 4.031 7 N -0.135 5.135 8 C -0.113 4.113 9 C -0.092 4.092 10 C -0.090 4.090 11 C -0.019 4.019 12 N -0.249 5.249 13 C 0.048 3.952 14 C -0.535 4.535 15 H 0.064 0.936 16 C -0.186 4.186 17 N -0.590 5.590 18 Si 0.758 3.242 19 H -0.190 1.190 20 H -0.212 1.212 21 H -0.180 1.180 22 C 0.000 4.000 23 C -0.063 4.063 24 C -0.227 4.227 25 C -0.242 4.242 26 C -0.123 4.123 27 O -0.097 6.097 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.164 0.836 32 H 0.181 0.819 33 H 0.184 0.816 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.068 0.932 41 H 0.170 0.830 42 H 0.185 0.815 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 1.360 17.163 -3.478 17.564 hybrid contribution 0.714 -1.322 0.090 1.505 sum 2.073 15.841 -3.388 16.332 Atomic orbital electron populations 1.23234 0.77474 1.04507 1.02184 1.86380 1.22481 1.26575 1.87746 1.18849 0.92154 0.84333 0.95613 1.21232 1.00896 0.90183 1.06199 1.15699 0.92390 0.85677 1.06609 1.25757 0.92442 0.92508 0.92379 1.81269 1.09773 1.12057 1.10446 1.21258 0.90544 1.00123 0.99396 1.21119 1.01642 0.89090 0.97330 1.19605 0.90918 0.95862 1.02615 1.20775 0.97786 0.93468 0.89872 1.61779 1.52951 1.01676 1.08484 1.19936 0.92918 0.86836 0.95531 1.21241 0.97892 0.92554 1.41837 0.93625 1.25701 1.00955 0.96857 0.95102 1.70044 1.36281 1.03760 1.48922 0.85915 0.80982 0.77666 0.79617 1.18999 1.21175 1.18019 1.20702 0.97024 0.98219 0.84041 1.22611 0.95292 0.93756 0.94657 1.21710 1.00741 1.05799 0.94415 1.22109 1.01278 1.01327 0.99523 1.24669 0.97700 1.03613 0.86309 1.84021 1.50640 1.52102 1.22982 0.88859 0.90885 0.91547 0.83578 0.81949 0.81564 0.92385 0.91555 0.96137 0.99027 0.92815 0.85701 0.93163 0.82960 0.81469 0.75467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.62 16 2 O -0.32 -10.75 9.71 -92.53 -0.90 -11.65 16 3 C 0.14 3.75 6.65 22.47 0.15 3.90 16 4 C -0.16 -3.50 8.74 22.64 0.20 -3.30 16 5 C 0.00 0.00 5.73 -21.38 -0.12 -0.12 16 6 C 0.28 5.95 15.33 88.33 1.35 7.31 16 7 N -0.46 -11.66 18.54 19.00 0.35 -11.31 16 8 C -0.09 -1.38 9.75 22.55 0.22 -1.16 16 9 C -0.07 -1.26 8.29 22.22 0.18 -1.07 16 10 C -0.09 -2.27 4.65 -19.71 -0.09 -2.36 16 11 C 0.11 3.56 4.58 85.56 0.39 3.95 16 12 N -0.52 -20.07 4.36 -909.96 -3.97 -24.03 16 13 C 0.17 8.20 3.65 85.56 0.31 8.51 16 14 C -0.50 -28.34 9.12 25.60 0.23 -28.10 16 15 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 16 C 0.01 0.61 5.47 84.65 0.46 1.07 16 17 N -0.95 -59.15 13.96 21.45 0.30 -58.85 16 18 Si 0.93 44.30 27.37 68.60 1.88 46.17 16 19 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.26 -11.63 6.69 99.48 0.67 -10.97 16 22 C 0.13 3.89 5.36 85.56 0.46 4.35 16 23 C -0.01 -0.44 6.12 24.83 0.15 -0.29 16 24 C -0.21 -6.35 10.81 22.19 0.24 -6.11 16 25 C -0.22 -6.14 10.91 22.19 0.24 -5.90 16 26 C -0.06 -1.58 12.09 66.97 0.81 -0.77 16 27 O -0.20 -7.11 9.80 -2.42 -0.02 -7.13 16 28 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 1.40 7.66 -2.39 -0.02 1.38 16 30 H 0.07 1.39 7.66 -2.39 -0.02 1.37 16 31 H 0.15 2.68 6.29 -2.91 -0.02 2.66 16 32 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.17 1.88 8.03 -2.91 -0.02 1.86 16 34 H 0.06 1.62 7.97 -2.39 -0.02 1.60 16 35 H 0.07 2.73 7.14 -2.38 -0.02 2.71 16 36 H 0.02 1.02 5.87 -2.39 -0.01 1.01 16 37 H -0.01 -0.36 7.14 -2.39 -0.02 -0.38 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.13 2.99 5.86 -2.39 -0.01 2.97 16 40 H 0.05 1.44 8.05 -2.39 -0.02 1.42 16 41 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.17 3.55 8.06 -2.91 -0.02 3.52 16 43 H 0.23 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -75.08 370.12 4.94 -70.14 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.99 Total: 15.13 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 6.31 Total: -18.47 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -3.32 Total: -94.19 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.92 Total: -18.79 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.17 kcal Total: -75.08 4.94 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121123044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.022 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds