Wall clock time and date at job start Tue Mar 31 2020 14:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35621 * 116.99734 * 2 1 4 4 C 1.38859 * 119.98155 * 0.25437 * 3 2 1 5 5 C 1.37722 * 120.21866 * 180.26075 * 4 3 2 6 6 C 1.39839 * 120.16928 * 359.73567 * 5 4 3 7 7 C 1.47631 * 120.01899 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99782 * 140.46198 * 7 6 5 9 9 N 1.34776 * 120.00470 * 320.45978 * 7 6 5 10 10 C 1.46497 * 119.99846 * 4.86250 * 9 7 6 11 11 C 1.46495 * 120.00136 * 184.85644 * 9 7 6 12 12 C 1.50699 * 109.46983 * 90.00312 * 11 9 7 13 13 H 1.07998 * 120.00197 * 359.97438 * 12 11 9 14 14 C 1.37882 * 119.99842 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99763 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00319 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47016 * 89.99948 * 16 14 12 18 18 H 1.48498 * 109.47602 * 210.00214 * 16 14 12 19 19 H 1.48509 * 109.47102 * 330.00224 * 16 14 12 20 20 C 1.39464 * 119.95778 * 0.02562 * 6 5 4 21 21 C 1.38940 * 119.78515 * 359.97438 * 20 6 5 22 22 C 1.48254 * 120.08957 * 179.97438 * 21 20 6 23 23 C 1.39392 * 119.73308 * 359.97438 * 22 21 20 24 24 C 1.38365 * 119.06759 * 179.74783 * 23 22 21 25 25 C 1.38817 * 118.51531 * 0.51452 * 24 23 22 26 26 C 1.38216 * 119.37486 * 359.48315 * 25 24 23 27 27 N 1.31783 * 120.90149 * 0.27348 * 26 25 24 28 28 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46935 * 299.99907 * 1 2 3 30 30 H 1.08995 * 109.47075 * 60.00353 * 1 2 3 31 31 H 1.08001 * 119.89040 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.91397 * 179.72389 * 5 4 3 33 33 H 1.09002 * 109.47327 * 85.89970 * 10 9 7 34 34 H 1.08997 * 109.47145 * 205.89974 * 10 9 7 35 35 H 1.09003 * 109.47156 * 325.90175 * 10 9 7 36 36 H 1.09000 * 109.47029 * 210.00293 * 11 9 7 37 37 H 1.09003 * 109.47527 * 330.00504 * 11 9 7 38 38 H 0.96998 * 119.99864 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.11092 * 180.02562 * 20 6 5 40 40 H 1.08004 * 120.46211 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.74163 * 180.25043 * 24 23 22 42 42 H 1.08002 * 120.30676 * 179.76451 * 25 24 23 43 43 H 1.08002 * 119.55503 * 180.25510 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2880 2.3727 0.0053 5 6 1.9081 3.6024 -0.0001 6 6 3.3040 3.6856 -0.0054 7 6 3.9652 5.0055 -0.0106 8 8 4.9660 5.1867 0.6557 9 7 3.4596 6.0097 -0.7538 10 6 2.1962 5.8250 -1.4721 11 6 4.1733 7.2859 -0.8434 12 6 5.1314 7.2451 -2.0058 13 1 5.2021 6.3572 -2.6165 14 6 5.9188 8.3411 -2.2890 15 7 6.7553 8.3053 -3.3032 16 14 5.7972 9.8766 -1.2323 17 1 6.7649 9.7829 -0.1098 18 1 6.1100 11.0712 -2.0571 19 1 4.4200 9.9965 -0.6898 20 6 4.0710 2.5209 -0.0057 21 6 3.4436 1.2812 -0.0003 22 6 4.2524 0.0387 -0.0012 23 6 5.6439 0.1197 -0.0081 24 6 6.3853 -1.0485 -0.0036 25 6 5.7105 -2.2617 -0.0033 26 6 4.3284 -2.2687 0.0034 27 7 3.6459 -1.1413 0.0041 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2096 2.3137 0.0091 32 1 1.3147 4.5048 -0.0004 33 1 1.3634 6.0558 -0.8078 34 1 2.1681 6.4906 -2.3348 35 1 2.1171 4.7911 -1.8082 36 1 3.4564 8.0935 -0.9916 37 1 4.7282 7.4575 0.0790 38 1 7.3089 9.0764 -3.5027 39 1 5.1493 2.5822 -0.0094 40 1 6.1365 1.0809 -0.0124 41 1 7.4649 -1.0173 -0.0047 42 1 6.2604 -3.1912 -0.0036 43 1 3.8004 -3.2108 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121966296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:29 Heat of formation + Delta-G solvation = 15.212607 kcal Electronic energy + Delta-G solvation = -26858.029071 eV Core-core repulsion = 23062.739925 eV Total energy + Delta-G solvation = -3795.289146 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76782 -39.70270 -39.04596 -36.91553 -35.05060 -33.19982 -32.52968 -32.38790 -30.44627 -29.66582 -28.45340 -27.29293 -26.13429 -24.19326 -23.89387 -23.11641 -21.62344 -21.45454 -19.09454 -18.13516 -17.26674 -16.95654 -16.66585 -16.36576 -15.84315 -15.75375 -15.53838 -15.26764 -14.51349 -14.32844 -14.19328 -14.04138 -13.85923 -13.56344 -13.42016 -13.09180 -12.71312 -12.57041 -12.34028 -12.31823 -12.04873 -11.91674 -11.65176 -11.49278 -11.10457 -10.98563 -10.84489 -10.52605 -10.17565 -10.04710 -9.73996 -9.56313 -9.40295 -9.16035 -8.66651 -8.59813 -7.95332 -7.72680 -6.09665 -4.08915 0.50826 1.17664 1.22878 1.65459 3.18113 3.19001 3.28961 3.34893 3.36906 3.60149 3.87306 4.09899 4.12522 4.38909 4.45605 4.67638 4.76514 4.90386 4.95048 4.96626 5.00816 5.02204 5.06342 5.23729 5.27598 5.33178 5.44183 5.49722 5.60660 5.61106 5.73859 5.85856 5.89982 6.08640 6.14169 6.15059 6.19677 6.38588 6.54982 6.66263 6.70483 6.93811 7.29106 7.31506 7.59064 7.96313 8.18724 8.45319 8.88162 8.95345 9.50216 11.03598 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003200 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.614404 B = 8747.328243 C =10075.345191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.272 6.272 3 C 0.179 3.821 4 C -0.226 4.226 5 C -0.041 4.041 6 C -0.158 4.158 7 C 0.555 3.445 8 O -0.537 6.537 9 N -0.590 5.590 10 C 0.077 3.923 11 C 0.215 3.785 12 C -0.531 4.531 13 H 0.075 0.925 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.007 4.007 21 C -0.099 4.099 22 C 0.181 3.819 23 C -0.166 4.166 24 C -0.073 4.073 25 C -0.184 4.184 26 C 0.099 3.901 27 N -0.456 5.456 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -19.507 6.441 23.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.182 6.182 3 C 0.131 3.869 4 C -0.245 4.245 5 C -0.060 4.060 6 C -0.161 4.161 7 C 0.342 3.658 8 O -0.415 6.415 9 N -0.321 5.321 10 C -0.066 4.066 11 C 0.094 3.906 12 C -0.570 4.570 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.027 4.027 21 C -0.101 4.101 22 C 0.045 3.955 23 C -0.185 4.185 24 C -0.099 4.099 25 C -0.204 4.204 26 C -0.059 4.059 27 N -0.165 5.165 28 H 0.117 0.883 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.149 0.851 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.457 -19.513 6.681 24.095 hybrid contribution 0.728 0.994 0.261 1.259 sum -11.728 -18.519 6.943 22.994 Atomic orbital electron populations 1.23129 0.79489 1.03851 1.01134 1.86401 1.19997 1.25255 1.86567 1.19199 0.91179 0.84753 0.91792 1.21121 1.00191 0.91771 1.11414 1.21559 0.93569 0.97940 0.92914 1.19890 0.93693 0.94189 1.08331 1.18023 0.84026 0.83496 0.80268 1.90755 1.25494 1.82555 1.42740 1.47726 1.22859 1.15020 1.46524 1.21989 0.85289 1.02368 0.96998 1.19718 0.92499 0.79807 0.98544 1.21338 1.20957 1.02144 1.12534 0.90680 1.24858 0.94630 0.98503 0.94986 1.69899 1.24418 1.30811 1.28372 0.86845 0.79208 0.82822 0.80789 1.19843 1.21067 1.19027 1.21093 1.00517 0.89032 0.92034 1.17691 0.89513 0.91434 1.11417 1.19543 0.90006 0.90940 0.94976 1.22205 0.94367 1.00158 1.01799 1.21516 1.00624 0.92089 0.95639 1.22161 0.96158 0.98853 1.03208 1.22724 0.91329 0.96437 0.95449 1.67821 1.40099 0.97423 1.11166 0.88340 0.92814 0.92723 0.84693 0.84165 0.93439 0.90403 0.91506 0.95039 0.94254 0.92531 0.83976 0.84242 0.84702 0.85059 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.27 -3.35 8.30 -18.56 -0.15 -3.50 16 3 C 0.18 2.40 6.70 -38.66 -0.26 2.14 16 4 C -0.23 -2.62 9.01 -39.54 -0.36 -2.98 16 5 C -0.04 -0.54 7.54 -39.17 -0.30 -0.84 16 6 C -0.16 -2.63 5.22 -105.01 -0.55 -3.18 16 7 C 0.55 11.70 7.33 -12.43 -0.09 11.61 16 8 O -0.54 -13.43 16.46 5.29 0.09 -13.34 16 9 N -0.59 -12.29 2.86 -184.16 -0.53 -12.82 16 10 C 0.08 1.19 8.88 59.85 0.53 1.72 16 11 C 0.21 5.25 4.25 -5.20 -0.02 5.23 16 12 C -0.53 -15.25 9.94 -34.44 -0.34 -15.59 16 13 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 15 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 16 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 20 C -0.01 -0.11 8.99 -38.86 -0.35 -0.46 16 21 C -0.10 -1.46 5.88 -104.83 -0.62 -2.08 16 22 C 0.18 2.58 6.73 -82.95 -0.56 2.02 16 23 C -0.17 -2.09 9.46 -39.11 -0.37 -2.46 16 24 C -0.07 -0.75 10.17 -39.32 -0.40 -1.15 16 25 C -0.18 -1.72 10.11 -39.38 -0.40 -2.12 16 26 C 0.10 1.05 11.17 -17.58 -0.20 0.86 16 27 N -0.46 -6.23 8.14 -9.79 -0.08 -6.31 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.36 7.64 -51.93 -0.40 -0.04 16 30 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 31 H 0.14 1.14 6.27 -52.49 -0.33 0.81 16 32 H 0.14 1.57 5.32 -52.49 -0.28 1.29 16 33 H 0.05 0.58 6.91 -51.93 -0.36 0.22 16 34 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.07 0.93 5.80 -51.93 -0.30 0.63 16 36 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 37 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 39 H 0.14 2.25 6.17 -52.49 -0.32 1.93 16 40 H 0.14 1.68 6.19 -52.48 -0.32 1.35 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -36.38 357.18 -7.70 -44.07 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -5.13 Total: 0.65 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.38 Total: -4.13 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.17 Total: -45.92 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.07 Total: -16.84 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.38 -7.70 -44.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121966296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.284 kcal (2) G-P(sol) polarization free energy of solvation -36.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds