Wall clock time and date at job start Tue Mar 31 2020 14:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35621 * 116.99734 * 2 1 4 4 C 1.38859 * 119.98155 * 0.25437 * 3 2 1 5 5 C 1.37722 * 120.21866 * 180.26075 * 4 3 2 6 6 C 1.39839 * 120.16928 * 359.73567 * 5 4 3 7 7 C 1.47631 * 120.01899 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99782 * 140.46198 * 7 6 5 9 9 N 1.34776 * 120.00470 * 320.45978 * 7 6 5 10 10 C 1.46497 * 119.99846 * 4.86250 * 9 7 6 11 11 C 1.46495 * 120.00136 * 184.85644 * 9 7 6 12 12 C 1.50699 * 109.46983 * 90.00312 * 11 9 7 13 13 H 1.07998 * 120.00197 * 359.97438 * 12 11 9 14 14 C 1.37882 * 119.99842 * 180.02562 * 12 11 9 15 15 N 1.31519 * 119.99763 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00319 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47016 * 89.99948 * 16 14 12 18 18 H 1.48498 * 109.47602 * 210.00214 * 16 14 12 19 19 H 1.48509 * 109.47102 * 330.00224 * 16 14 12 20 20 C 1.39464 * 119.95778 * 0.02562 * 6 5 4 21 21 C 1.38940 * 119.78515 * 359.97438 * 20 6 5 22 22 C 1.48254 * 120.08957 * 179.97438 * 21 20 6 23 23 C 1.39392 * 119.73308 * 359.97438 * 22 21 20 24 24 C 1.38365 * 119.06759 * 179.74783 * 23 22 21 25 25 C 1.38817 * 118.51531 * 0.51452 * 24 23 22 26 26 C 1.38216 * 119.37486 * 359.48315 * 25 24 23 27 27 N 1.31783 * 120.90149 * 0.27348 * 26 25 24 28 28 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46935 * 299.99907 * 1 2 3 30 30 H 1.08995 * 109.47075 * 60.00353 * 1 2 3 31 31 H 1.08001 * 119.89040 * 359.97438 * 4 3 2 32 32 H 1.07997 * 119.91397 * 179.72389 * 5 4 3 33 33 H 1.09002 * 109.47327 * 85.89970 * 10 9 7 34 34 H 1.08997 * 109.47145 * 205.89974 * 10 9 7 35 35 H 1.09003 * 109.47156 * 325.90175 * 10 9 7 36 36 H 1.09000 * 109.47029 * 210.00293 * 11 9 7 37 37 H 1.09003 * 109.47527 * 330.00504 * 11 9 7 38 38 H 0.96998 * 119.99864 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.11092 * 180.02562 * 20 6 5 40 40 H 1.08004 * 120.46211 * 0.02562 * 23 22 21 41 41 H 1.08000 * 120.74163 * 180.25043 * 24 23 22 42 42 H 1.08002 * 120.30676 * 179.76451 * 25 24 23 43 43 H 1.08002 * 119.55503 * 180.25510 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2880 2.3727 0.0053 5 6 1.9081 3.6024 -0.0001 6 6 3.3040 3.6856 -0.0054 7 6 3.9652 5.0055 -0.0106 8 8 4.9660 5.1867 0.6557 9 7 3.4596 6.0097 -0.7538 10 6 2.1962 5.8250 -1.4721 11 6 4.1733 7.2859 -0.8434 12 6 5.1314 7.2451 -2.0058 13 1 5.2021 6.3572 -2.6165 14 6 5.9188 8.3411 -2.2890 15 7 6.7553 8.3053 -3.3032 16 14 5.7972 9.8766 -1.2323 17 1 6.7649 9.7829 -0.1098 18 1 6.1100 11.0712 -2.0571 19 1 4.4200 9.9965 -0.6898 20 6 4.0710 2.5209 -0.0057 21 6 3.4436 1.2812 -0.0003 22 6 4.2524 0.0387 -0.0012 23 6 5.6439 0.1197 -0.0081 24 6 6.3853 -1.0485 -0.0036 25 6 5.7105 -2.2617 -0.0033 26 6 4.3284 -2.2687 0.0034 27 7 3.6459 -1.1413 0.0041 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2096 2.3137 0.0091 32 1 1.3147 4.5048 -0.0004 33 1 1.3634 6.0558 -0.8078 34 1 2.1681 6.4906 -2.3348 35 1 2.1171 4.7911 -1.8082 36 1 3.4564 8.0935 -0.9916 37 1 4.7282 7.4575 0.0790 38 1 7.3089 9.0764 -3.5027 39 1 5.1493 2.5822 -0.0094 40 1 6.1365 1.0809 -0.0124 41 1 7.4649 -1.0173 -0.0047 42 1 6.2604 -3.1912 -0.0036 43 1 3.8004 -3.2108 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121966296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:29 Heat of formation + Delta-G solvation = -9.070203 kcal Electronic energy + Delta-G solvation = -26859.082053 eV Core-core repulsion = 23062.739925 eV Total energy + Delta-G solvation = -3796.342128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.81017 -40.84097 -40.22105 -38.04471 -36.75605 -34.80874 -33.97634 -33.35256 -31.69514 -30.77768 -29.95305 -28.15940 -27.58157 -25.29649 -25.04582 -24.44521 -22.87325 -22.57325 -20.50074 -19.15852 -19.10666 -18.45633 -17.75739 -17.39465 -17.09168 -16.68617 -16.62010 -16.50927 -16.08020 -15.83530 -15.26962 -15.07483 -14.96520 -14.79828 -14.58390 -14.37082 -13.94555 -13.87372 -13.68616 -13.59330 -13.50308 -13.10815 -12.85920 -12.75899 -12.57590 -12.42995 -12.09474 -11.88844 -11.83544 -11.74994 -10.95574 -10.85103 -10.81475 -10.67576 -10.29935 -9.72525 -9.42991 -8.94002 -8.34574 -6.40568 -0.45660 0.01940 0.36228 0.70920 1.33462 1.38116 1.46437 1.76892 2.22793 2.31294 2.36252 2.63924 2.99702 3.08243 3.15421 3.50859 3.65685 3.81199 3.97385 4.03343 4.08696 4.23114 4.26694 4.37842 4.42701 4.47468 4.50206 4.55447 4.60127 4.72768 4.76106 4.82604 4.88618 4.91921 4.94777 4.99904 5.13724 5.20960 5.27585 5.33457 5.44053 5.53190 5.60576 5.80257 6.22361 6.44587 6.59952 6.61341 7.06787 7.17675 7.32352 8.82446 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.003200 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.614404 B = 8747.328243 C =10075.345191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.287 6.287 3 C 0.181 3.819 4 C -0.210 4.210 5 C -0.031 4.031 6 C -0.181 4.181 7 C 0.548 3.452 8 O -0.594 6.594 9 N -0.598 5.598 10 C 0.070 3.930 11 C 0.222 3.778 12 C -0.541 4.541 13 H 0.026 0.974 14 C 0.011 3.989 15 N -0.945 5.945 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.274 1.274 19 H -0.234 1.234 20 C -0.022 4.022 21 C -0.112 4.112 22 C 0.154 3.846 23 C -0.187 4.187 24 C -0.077 4.077 25 C -0.171 4.171 26 C 0.090 3.910 27 N -0.476 5.476 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.178 0.822 32 H 0.167 0.833 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.022 0.978 38 H 0.269 0.731 39 H 0.123 0.877 40 H 0.129 0.871 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -20.709 7.383 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.197 6.197 3 C 0.132 3.868 4 C -0.228 4.228 5 C -0.049 4.049 6 C -0.185 4.185 7 C 0.338 3.662 8 O -0.476 6.476 9 N -0.328 5.328 10 C -0.072 4.072 11 C 0.100 3.900 12 C -0.579 4.579 13 H 0.045 0.955 14 C -0.187 4.187 15 N -0.585 5.585 16 Si 0.772 3.228 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.157 1.157 20 C -0.042 4.042 21 C -0.114 4.114 22 C 0.018 3.982 23 C -0.207 4.207 24 C -0.103 4.103 25 C -0.190 4.190 26 C -0.069 4.069 27 N -0.185 5.185 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.195 0.805 32 H 0.184 0.816 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.147 0.853 41 H 0.176 0.824 42 H 0.187 0.813 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.727 -20.737 7.601 27.114 hybrid contribution 1.711 1.078 -0.095 2.025 sum -14.016 -19.659 7.507 25.284 Atomic orbital electron populations 1.23489 0.76933 1.05664 1.02586 1.86390 1.22629 1.24725 1.85972 1.19361 0.90820 0.85962 0.90677 1.21482 1.01997 0.90178 1.09173 1.21748 0.91739 0.99711 0.91716 1.19592 0.95403 0.91614 1.11880 1.18739 0.83417 0.84873 0.79210 1.90699 1.28098 1.83631 1.45157 1.47816 1.24302 1.13850 1.46821 1.22336 0.84028 1.03352 0.97448 1.19419 0.92416 0.82565 0.95557 1.21565 1.22451 1.00553 1.13349 0.95520 1.25877 0.93938 1.02520 0.96351 1.70056 1.25662 1.32281 1.30504 0.85687 0.80705 0.77913 0.78483 1.20238 1.19937 1.15734 1.20968 0.99863 0.89898 0.93448 1.17824 0.90850 0.91122 1.11596 1.19614 0.90497 0.91263 0.96783 1.22299 0.94459 1.00885 1.03034 1.21878 1.01865 0.91750 0.94795 1.22572 0.95933 0.99769 1.00775 1.23353 0.92326 0.96675 0.94502 1.67798 1.40923 0.97809 1.11950 0.86606 0.91221 0.91202 0.80502 0.81624 0.88846 0.90958 0.90046 0.92423 0.96025 0.92203 0.85898 0.85321 0.82385 0.81320 0.79848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.29 -6.46 8.30 -89.33 -0.74 -7.20 16 3 C 0.18 4.60 6.70 22.87 0.15 4.75 16 4 C -0.21 -4.24 9.01 22.30 0.20 -4.04 16 5 C -0.03 -0.75 7.54 22.54 0.17 -0.58 16 6 C -0.18 -6.24 5.22 -20.11 -0.11 -6.35 16 7 C 0.55 24.16 7.33 86.72 0.64 24.80 16 8 O -0.59 -31.77 16.46 -3.98 -0.07 -31.83 16 9 N -0.60 -25.18 2.86 -854.83 -2.44 -27.62 16 10 C 0.07 2.03 8.88 127.77 1.13 3.16 16 11 C 0.22 11.00 4.25 85.63 0.36 11.36 16 12 C -0.54 -32.37 9.94 25.60 0.25 -32.12 16 13 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 14 C 0.01 0.67 5.47 84.66 0.46 1.13 16 15 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 16 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.23 -9.75 6.54 99.48 0.65 -9.10 16 20 C -0.02 -0.75 8.99 22.73 0.20 -0.55 16 21 C -0.11 -3.43 5.88 -20.00 -0.12 -3.55 16 22 C 0.15 4.53 6.73 41.96 0.28 4.81 16 23 C -0.19 -5.03 9.46 22.58 0.21 -4.82 16 24 C -0.08 -1.56 10.17 22.44 0.23 -1.33 16 25 C -0.17 -2.83 10.11 22.40 0.23 -2.60 16 26 C 0.09 1.74 11.17 84.69 0.95 2.69 16 27 N -0.48 -12.71 8.14 -184.89 -1.50 -14.21 16 28 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.62 7.64 -2.39 -0.02 0.61 16 30 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 31 H 0.18 2.05 6.27 -2.91 -0.02 2.03 16 32 H 0.17 3.08 5.32 -2.91 -0.02 3.06 16 33 H 0.09 1.88 6.91 -2.39 -0.02 1.86 16 34 H 0.07 2.18 8.04 -2.39 -0.02 2.16 16 35 H 0.08 2.13 5.80 -2.39 -0.01 2.11 16 36 H 0.06 2.55 7.13 -2.39 -0.02 2.53 16 37 H 0.02 1.15 6.79 -2.39 -0.02 1.13 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.12 4.50 6.17 -2.91 -0.02 4.48 16 40 H 0.13 3.58 6.19 -2.91 -0.02 3.56 16 41 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 43 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -86.35 357.18 4.79 -81.56 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.99 Total: 14.89 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 6.37 Total: -2.02 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -3.65 Total: -101.86 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.81 Total: -39.04 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -86.35 4.79 -81.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121966296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.491 kcal (2) G-P(sol) polarization free energy of solvation -86.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds