Wall clock time and date at job start Tue Mar 31 2020 14:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35658 * 116.99788 * 2 1 4 4 C 1.38704 * 120.15410 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.08433 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.39278 * 359.97438 * 5 4 3 7 7 C 1.37789 * 120.29964 * 359.97438 * 6 5 4 8 8 C 1.39704 * 119.90841 * 359.76783 * 7 6 5 9 9 C 1.47528 * 120.19435 * 180.25405 * 8 7 6 10 10 O 1.21588 * 120.00601 * 126.08416 * 9 8 7 11 11 N 1.34782 * 120.00131 * 306.08173 * 9 8 7 12 12 C 1.46500 * 119.99598 * 4.72111 * 11 9 8 13 13 C 1.50702 * 109.47240 * 95.81203 * 12 11 9 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00175 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99870 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47071 * 90.00353 * 17 15 13 19 19 H 1.48496 * 109.47176 * 210.00550 * 17 15 13 20 20 H 1.48508 * 109.46890 * 330.00796 * 17 15 13 21 21 C 1.46495 * 120.00216 * 184.71996 * 11 9 8 22 22 C 1.50697 * 109.47138 * 90.00297 * 21 11 9 23 23 C 1.38222 * 119.61981 * 94.99994 * 22 21 11 24 24 C 1.38635 * 119.16152 * 179.97438 * 23 22 21 25 25 C 1.38670 * 118.41840 * 0.02562 * 24 23 22 26 26 C 1.38178 * 119.16410 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61443 * 274.72447 * 22 21 11 28 28 H 1.09007 * 109.47199 * 59.99595 * 1 2 3 29 29 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47311 * 300.00445 * 1 2 3 31 31 H 1.08003 * 119.95689 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.80313 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.85148 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.04334 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47238 * 215.81197 * 12 11 9 36 36 H 1.09001 * 109.47344 * 335.81520 * 12 11 9 37 37 H 0.97002 * 119.99772 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47351 * 210.00044 * 21 11 9 39 39 H 1.08999 * 109.47370 * 329.99845 * 21 11 9 40 40 H 1.08002 * 120.42136 * 359.95298 * 23 22 21 41 41 H 1.08000 * 120.78777 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.41738 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.61829 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3037 3.6837 0.0016 7 6 4.0667 2.5363 0.0032 8 6 3.4441 1.2857 0.0081 9 6 4.2549 0.0532 0.0156 10 8 4.0695 -0.7915 0.8702 11 7 5.2013 -0.1365 -0.9252 12 6 5.4961 0.9240 -1.8919 13 6 6.6735 1.7311 -1.4086 14 1 7.1543 1.4790 -0.4750 15 6 7.1375 2.7908 -2.1589 16 7 6.5523 3.0975 -3.2960 17 14 8.5973 3.7908 -1.5603 18 1 9.8532 3.1940 -2.0814 19 1 8.4735 5.1879 -2.0479 20 1 8.6255 3.7852 -0.0755 21 6 5.9350 -1.4032 -0.9810 22 6 5.2054 -2.3672 -1.8805 23 6 5.5725 -2.4736 -3.2088 24 6 4.8952 -3.3638 -4.0278 25 6 3.8689 -4.1168 -3.4776 26 6 3.5580 -3.9563 -2.1408 27 7 4.2276 -3.1035 -1.3900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2138 2.3195 -0.0014 32 1 1.3304 4.5078 -0.0008 33 1 3.7861 4.6500 0.0016 34 1 5.1446 2.6038 0.0049 35 1 5.7327 0.4792 -2.8584 36 1 4.6273 1.5743 -1.9941 37 1 6.8785 3.8432 -3.8237 38 1 6.9362 -1.2262 -1.3741 39 1 6.0078 -1.8255 0.0213 40 1 6.3767 -1.8705 -3.6039 41 1 5.1605 -3.4684 -5.0694 42 1 3.3201 -4.8204 -4.0860 43 1 2.7603 -4.5393 -1.7046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129519812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:42 Heat of formation + Delta-G solvation = -0.518548 kcal Electronic energy + Delta-G solvation = -28064.907056 eV Core-core repulsion = 24268.935756 eV Total energy + Delta-G solvation = -3795.971300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.17610 -39.74773 -38.29580 -36.77520 -34.98322 -32.89498 -32.12613 -31.60434 -30.49921 -29.66316 -27.59406 -27.09075 -26.11045 -23.37163 -23.19604 -22.61166 -21.70474 -21.41831 -18.99405 -17.48926 -16.83485 -16.61860 -16.12506 -15.94826 -15.76520 -15.49515 -15.27838 -15.07628 -14.69901 -14.34153 -13.96885 -13.73111 -13.48553 -13.12892 -12.96488 -12.61882 -12.57189 -12.27172 -12.11787 -11.88901 -11.54456 -11.45005 -11.24745 -11.12288 -10.93785 -10.87163 -10.70294 -10.59300 -10.17885 -9.79924 -9.58334 -9.05931 -9.03548 -8.67497 -8.63156 -8.31669 -7.79144 -7.65364 -6.20650 -4.28540 1.36857 1.58701 1.59595 1.91796 3.20255 3.28517 3.31389 3.55682 3.59385 3.84169 4.26647 4.28125 4.45051 4.68867 5.03304 5.06707 5.08319 5.10943 5.26469 5.28676 5.29503 5.31640 5.43666 5.57380 5.59133 5.71169 5.83776 5.86338 5.92993 6.07387 6.16714 6.31406 6.41093 6.43840 6.49176 6.63907 6.78742 6.81807 6.99399 7.03259 7.24381 7.30535 7.58202 7.73725 7.75369 8.04360 8.36225 8.43917 8.78868 9.14248 9.38878 10.85059 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.006414 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.041334 B = 4364.375483 C = 6868.975454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.299 6.299 3 C 0.162 3.838 4 C -0.229 4.229 5 C -0.069 4.069 6 C -0.166 4.166 7 C -0.025 4.025 8 C -0.151 4.151 9 C 0.570 3.430 10 O -0.540 6.540 11 N -0.589 5.589 12 C 0.234 3.766 13 C -0.541 4.541 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.169 3.831 22 C 0.121 3.879 23 C -0.156 4.156 24 C -0.082 4.082 25 C -0.183 4.183 26 C 0.093 3.907 27 N -0.457 5.457 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.124 0.876 34 H 0.164 0.836 35 H 0.031 0.969 36 H 0.045 0.955 37 H 0.265 0.735 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.324 -5.475 -0.074 9.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.115 3.885 4 C -0.248 4.248 5 C -0.088 4.088 6 C -0.184 4.184 7 C -0.043 4.043 8 C -0.155 4.155 9 C 0.358 3.642 10 O -0.418 6.418 11 N -0.320 5.320 12 C 0.114 3.886 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.044 3.956 22 C -0.018 4.018 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.203 4.203 26 C -0.065 4.065 27 N -0.166 5.166 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.181 0.819 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.155 0.845 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.539 -5.892 1.097 10.433 hybrid contribution 0.638 0.801 -1.106 1.507 sum -7.902 -5.091 -0.008 9.400 Atomic orbital electron populations 1.23003 0.79301 1.03508 1.00841 1.86203 1.20470 1.26561 1.87906 1.18952 0.90946 0.84313 0.94277 1.20986 0.99404 0.92231 1.12185 1.20971 0.94855 0.96501 0.96446 1.20997 0.93420 0.98791 1.05200 1.21945 1.02782 0.89620 0.89923 1.19266 0.90287 0.95060 1.10900 1.17957 0.79566 0.85344 0.81328 1.90712 1.68640 1.45026 1.37423 1.48021 1.36425 1.14994 1.32560 1.19540 0.97112 0.84679 0.87222 1.21492 1.14966 1.14024 1.07446 0.91749 1.24929 0.96790 0.97061 0.94680 1.69937 1.40480 1.28763 1.12927 0.86592 0.82776 0.79395 0.79365 1.20485 1.21061 1.19563 1.20099 0.93709 0.82467 0.99276 1.21920 0.92845 0.94203 0.92829 1.22118 1.01693 0.99216 0.94565 1.21529 0.94718 0.94632 0.99888 1.22070 0.99443 1.01731 0.97098 1.22735 0.97771 0.95246 0.90744 1.67650 1.05425 1.04434 1.39070 0.93045 0.88640 0.92908 0.85786 0.86253 0.85796 0.81878 0.95101 0.93699 0.92490 0.88585 0.89073 0.84471 0.85218 0.85444 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.72 9.70 -21.83 -0.21 -5.93 16 3 C 0.16 3.16 6.69 -38.69 -0.26 2.90 16 4 C -0.23 -3.69 9.03 -39.48 -0.36 -4.05 16 5 C -0.07 -1.08 10.03 -39.54 -0.40 -1.47 16 6 C -0.17 -2.91 10.02 -39.63 -0.40 -3.31 16 7 C -0.02 -0.51 7.67 -39.20 -0.30 -0.81 16 8 C -0.15 -3.28 4.74 -104.85 -0.50 -3.78 16 9 C 0.57 13.33 6.83 -12.47 -0.09 13.24 16 10 O -0.54 -13.68 16.31 2.13 0.03 -13.64 16 11 N -0.59 -13.13 2.44 -177.67 -0.43 -13.56 16 12 C 0.23 5.57 4.68 -5.19 -0.02 5.54 16 13 C -0.54 -13.34 7.03 -34.44 -0.24 -13.58 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -23.35 13.29 55.43 0.74 -22.62 16 17 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 21 C 0.17 3.35 5.77 -5.20 -0.03 3.32 16 22 C 0.12 2.26 6.36 -82.59 -0.53 1.74 16 23 C -0.16 -2.52 9.72 -39.44 -0.38 -2.90 16 24 C -0.08 -1.12 10.18 -39.28 -0.40 -1.51 16 25 C -0.18 -2.39 10.11 -39.44 -0.40 -2.79 16 26 C 0.09 1.42 11.18 -17.55 -0.20 1.22 16 27 N -0.46 -8.72 10.27 -9.48 -0.10 -8.82 16 28 H 0.05 0.58 7.66 -51.92 -0.40 0.18 16 29 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.12 1.59 6.30 -52.48 -0.33 1.26 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 34 H 0.16 3.61 5.39 -52.49 -0.28 3.33 16 35 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 36 H 0.05 1.15 5.65 -51.93 -0.29 0.85 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.10 1.75 7.97 -51.93 -0.41 1.33 16 39 H 0.09 1.86 7.36 -51.93 -0.38 1.48 16 40 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -31.77 366.90 -8.49 -40.25 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -5.43 Total: 7.45 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.60 Total: -3.24 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.21 Total: -45.00 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.18 Total: -19.58 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.77 -8.49 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129519812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.733 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds