Wall clock time and date at job start Tue Mar 31 2020 14:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35658 * 116.99788 * 2 1 4 4 C 1.38704 * 120.15410 * 359.97438 * 3 2 1 5 5 C 1.38050 * 120.08433 * 179.97438 * 4 3 2 6 6 C 1.38541 * 120.39278 * 359.97438 * 5 4 3 7 7 C 1.37789 * 120.29964 * 359.97438 * 6 5 4 8 8 C 1.39704 * 119.90841 * 359.76783 * 7 6 5 9 9 C 1.47528 * 120.19435 * 180.25405 * 8 7 6 10 10 O 1.21588 * 120.00601 * 126.08416 * 9 8 7 11 11 N 1.34782 * 120.00131 * 306.08173 * 9 8 7 12 12 C 1.46500 * 119.99598 * 4.72111 * 11 9 8 13 13 C 1.50702 * 109.47240 * 95.81203 * 12 11 9 14 14 H 1.07998 * 119.99628 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00175 * 179.97438 * 13 12 11 16 16 N 1.31513 * 119.99870 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47071 * 90.00353 * 17 15 13 19 19 H 1.48496 * 109.47176 * 210.00550 * 17 15 13 20 20 H 1.48508 * 109.46890 * 330.00796 * 17 15 13 21 21 C 1.46495 * 120.00216 * 184.71996 * 11 9 8 22 22 C 1.50697 * 109.47138 * 90.00297 * 21 11 9 23 23 C 1.38222 * 119.61981 * 94.99994 * 22 21 11 24 24 C 1.38635 * 119.16152 * 179.97438 * 23 22 21 25 25 C 1.38670 * 118.41840 * 0.02562 * 24 23 22 26 26 C 1.38178 * 119.16410 * 359.97438 * 25 24 23 27 27 N 1.31856 * 119.61443 * 274.72447 * 22 21 11 28 28 H 1.09007 * 109.47199 * 59.99595 * 1 2 3 29 29 H 1.08997 * 109.47353 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47311 * 300.00445 * 1 2 3 31 31 H 1.08003 * 119.95689 * 359.97438 * 4 3 2 32 32 H 1.08002 * 119.80313 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.85148 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.04334 * 180.02562 * 7 6 5 35 35 H 1.08999 * 109.47238 * 215.81197 * 12 11 9 36 36 H 1.09001 * 109.47344 * 335.81520 * 12 11 9 37 37 H 0.97002 * 119.99772 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.47351 * 210.00044 * 21 11 9 39 39 H 1.08999 * 109.47370 * 329.99845 * 21 11 9 40 40 H 1.08002 * 120.42136 * 359.95298 * 23 22 21 41 41 H 1.08000 * 120.78777 * 180.02562 * 24 23 22 42 42 H 1.08005 * 120.41738 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.61829 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6033 0.0000 6 6 3.3037 3.6837 0.0016 7 6 4.0667 2.5363 0.0032 8 6 3.4441 1.2857 0.0081 9 6 4.2549 0.0532 0.0156 10 8 4.0695 -0.7915 0.8702 11 7 5.2013 -0.1365 -0.9252 12 6 5.4961 0.9240 -1.8919 13 6 6.6735 1.7311 -1.4086 14 1 7.1543 1.4790 -0.4750 15 6 7.1375 2.7908 -2.1589 16 7 6.5523 3.0975 -3.2960 17 14 8.5973 3.7908 -1.5603 18 1 9.8532 3.1940 -2.0814 19 1 8.4735 5.1879 -2.0479 20 1 8.6255 3.7852 -0.0755 21 6 5.9350 -1.4032 -0.9810 22 6 5.2054 -2.3672 -1.8805 23 6 5.5725 -2.4736 -3.2088 24 6 4.8952 -3.3638 -4.0278 25 6 3.8689 -4.1168 -3.4776 26 6 3.5580 -3.9563 -2.1408 27 7 4.2276 -3.1035 -1.3900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2138 2.3195 -0.0014 32 1 1.3304 4.5078 -0.0008 33 1 3.7861 4.6500 0.0016 34 1 5.1446 2.6038 0.0049 35 1 5.7327 0.4792 -2.8584 36 1 4.6273 1.5743 -1.9941 37 1 6.8785 3.8432 -3.8237 38 1 6.9362 -1.2262 -1.3741 39 1 6.0078 -1.8255 0.0213 40 1 6.3767 -1.8705 -3.6039 41 1 5.1605 -3.4684 -5.0694 42 1 3.3201 -4.8204 -4.0860 43 1 2.7603 -4.5393 -1.7046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129519812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:41 Heat of formation + Delta-G solvation = -19.283909 kcal Electronic energy + Delta-G solvation = -28065.720783 eV Core-core repulsion = 24268.935756 eV Total energy + Delta-G solvation = -3796.785028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64720 -41.02325 -39.86437 -38.16665 -36.78119 -34.70271 -33.43191 -33.03797 -31.86215 -31.02288 -29.38099 -28.28842 -27.60809 -25.10531 -24.47604 -24.13828 -23.05706 -22.77547 -20.57279 -18.88695 -18.67131 -18.09496 -17.62016 -17.45394 -17.06684 -16.86896 -16.57022 -16.44256 -16.37505 -15.88020 -15.41880 -15.20988 -14.80090 -14.47592 -14.26575 -14.20699 -14.00173 -13.87903 -13.58007 -13.33570 -13.07711 -12.95722 -12.73081 -12.62413 -12.54979 -12.42305 -12.15294 -11.98393 -11.88217 -11.70887 -10.82765 -10.74256 -10.57006 -10.33645 -9.94684 -9.80257 -9.47325 -9.15078 -8.16395 -6.30392 0.13490 0.17190 0.41918 0.52259 1.43889 1.47071 1.55985 1.87138 2.27453 2.37469 2.46427 2.87957 3.01906 3.12836 3.41595 3.68328 3.86767 3.97656 4.02576 4.10854 4.20800 4.26883 4.29483 4.37267 4.41439 4.52313 4.54503 4.61212 4.66561 4.72415 4.78387 4.86609 4.89668 5.06111 5.21601 5.24094 5.28391 5.29113 5.44448 5.62963 5.69216 5.81474 5.84237 5.89904 6.08184 6.45149 6.57945 6.82479 7.16022 7.32198 7.44111 8.89262 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.006414 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.041334 B = 4364.375483 C = 6868.975454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.149 3.851 4 C -0.219 4.219 5 C -0.053 4.053 6 C -0.173 4.173 7 C -0.044 4.044 8 C -0.191 4.191 9 C 0.565 3.435 10 O -0.573 6.573 11 N -0.589 5.589 12 C 0.257 3.743 13 C -0.542 4.542 14 H 0.054 0.946 15 C 0.033 3.967 16 N -0.912 5.912 17 Si 0.951 3.049 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.168 3.832 22 C 0.094 3.906 23 C -0.166 4.166 24 C -0.077 4.077 25 C -0.164 4.164 26 C 0.078 3.922 27 N -0.499 5.499 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.015 0.985 36 H 0.027 0.973 37 H 0.268 0.732 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.167 0.833 42 H 0.173 0.827 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 -4.954 -1.328 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.103 3.897 4 C -0.238 4.238 5 C -0.071 4.071 6 C -0.191 4.191 7 C -0.063 4.063 8 C -0.195 4.195 9 C 0.354 3.646 10 O -0.454 6.454 11 N -0.319 5.319 12 C 0.136 3.864 13 C -0.580 4.580 14 H 0.072 0.928 15 C -0.168 4.168 16 N -0.550 5.550 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.205 1.205 20 H -0.195 1.195 21 C 0.044 3.956 22 C -0.044 4.044 23 C -0.187 4.187 24 C -0.103 4.103 25 C -0.184 4.184 26 C -0.080 4.080 27 N -0.209 5.209 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.182 0.818 32 H 0.184 0.816 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.155 0.845 41 H 0.185 0.815 42 H 0.190 0.810 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.533 -5.379 -0.163 11.828 hybrid contribution 1.124 0.549 -0.737 1.452 sum -9.409 -4.829 -0.900 10.614 Atomic orbital electron populations 1.23373 0.76258 1.05305 1.02634 1.86155 1.23759 1.26971 1.87888 1.19172 0.90448 0.85738 0.94387 1.21435 1.01188 0.91037 1.10092 1.21473 0.94073 0.98092 0.93476 1.21265 0.94711 0.98296 1.04836 1.21731 1.01823 0.90681 0.92022 1.19334 0.91715 0.94399 1.14019 1.18385 0.79537 0.85848 0.80814 1.90656 1.69680 1.46487 1.38580 1.48044 1.36435 1.15488 1.31983 1.19138 0.96047 0.84474 0.86702 1.21515 1.15064 1.14416 1.07013 0.92765 1.25532 0.98917 0.97718 0.94648 1.70025 1.41769 1.29354 1.13850 0.85663 0.79815 0.78122 0.78775 1.20121 1.20461 1.19518 1.20126 0.94281 0.82139 0.99043 1.21617 0.94031 0.95154 0.93632 1.22197 1.02292 1.00222 0.93947 1.21980 0.93964 0.93170 1.01212 1.22517 0.98463 1.01089 0.96302 1.23263 0.97961 0.94748 0.91994 1.67534 1.06399 1.05930 1.41039 0.91200 0.87110 0.90905 0.81824 0.81550 0.84065 0.84591 0.96691 0.95481 0.92280 0.88014 0.90817 0.84470 0.81549 0.80977 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.55 16 2 O -0.33 -12.85 9.70 -86.72 -0.84 -13.69 16 3 C 0.15 5.84 6.69 22.84 0.15 5.99 16 4 C -0.22 -6.47 9.03 22.34 0.20 -6.27 16 5 C -0.05 -1.48 10.03 22.30 0.22 -1.26 16 6 C -0.17 -5.93 10.02 22.24 0.22 -5.71 16 7 C -0.04 -1.89 7.67 22.52 0.17 -1.72 16 8 C -0.19 -8.66 4.74 -20.01 -0.09 -8.76 16 9 C 0.56 28.25 6.83 86.69 0.59 28.84 16 10 O -0.57 -31.14 16.31 -0.97 -0.02 -31.16 16 11 N -0.59 -28.21 2.44 -834.29 -2.04 -30.25 16 12 C 0.26 12.94 4.68 85.63 0.40 13.34 16 13 C -0.54 -27.96 7.03 25.60 0.18 -27.78 16 14 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 15 C 0.03 1.71 5.46 84.66 0.46 2.17 16 16 N -0.91 -48.94 13.29 21.45 0.28 -48.66 16 17 Si 0.95 40.72 29.54 68.60 2.03 42.74 16 18 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 C 0.17 7.22 5.77 85.63 0.49 7.71 16 22 C 0.09 3.68 6.36 42.55 0.27 3.95 16 23 C -0.17 -5.46 9.72 22.36 0.22 -5.24 16 24 C -0.08 -1.95 10.18 22.47 0.23 -1.73 16 25 C -0.16 -3.83 10.11 22.36 0.23 -3.60 16 26 C 0.08 2.32 11.18 84.67 0.95 3.27 16 27 N -0.50 -19.75 10.27 -183.89 -1.89 -21.64 16 28 H 0.07 1.38 7.66 -2.38 -0.02 1.36 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 31 H 0.16 3.45 6.30 -2.91 -0.02 3.43 16 32 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 33 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.14 6.44 5.39 -2.91 -0.02 6.43 16 35 H 0.02 0.79 8.11 -2.39 -0.02 0.77 16 36 H 0.03 1.47 5.65 -2.39 -0.01 1.46 16 37 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 38 H 0.10 4.06 7.97 -2.39 -0.02 4.04 16 39 H 0.07 3.34 7.36 -2.39 -0.02 3.32 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.17 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.17 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -74.02 366.90 4.56 -69.46 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: 1.03 Total: 28.44 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 6.01 Total: 4.75 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -3.64 Total: -100.55 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.86 Total: -44.84 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Total: -74.02 4.56 -69.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129519812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.175 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds