Wall clock time and date at job start Tue Mar 31 2020 14:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 116.99615 * 2 1 4 4 C 1.39226 * 119.89707 * 0.02562 * 3 2 1 5 5 C 1.37688 * 120.58977 * 179.97438 * 4 3 2 6 6 C 1.39142 * 120.00486 * 0.04591 * 5 4 3 7 7 N 1.38022 * 133.13180 * 179.97438 * 6 5 4 8 8 H 0.97001 * 124.91001 * 359.97438 * 7 6 5 9 9 C 1.36412 * 110.18196 * 179.70584 * 7 6 5 10 10 C 1.35794 * 109.73206 * 0.45514 * 9 7 6 11 11 C 1.47597 * 126.67495 * 179.82718 * 10 9 7 12 12 C 1.31276 * 117.81697 * 104.66331 * 11 10 9 13 13 C 1.49944 * 123.39002 * 180.58033 * 12 11 10 14 14 N 1.46997 * 109.37443 * 349.36080 * 13 12 11 15 15 C 1.34784 * 121.33011 * 223.15940 * 14 13 12 16 16 O 1.21682 * 119.99954 * 179.71467 * 15 14 13 17 17 C 1.46368 * 119.99916 * 359.44460 * 15 14 13 18 18 H 1.07998 * 120.00437 * 359.97438 * 17 15 14 19 19 C 1.40055 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30662 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47200 * 59.99901 * 21 19 17 23 23 H 1.48497 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47156 * 299.99916 * 21 19 17 25 25 C 1.47302 * 117.33446 * 42.88620 * 14 13 12 26 26 C 1.49987 * 117.81803 * 284.68822 * 11 10 9 27 27 C 1.40454 * 119.47503 * 359.95333 * 6 5 4 28 28 C 1.38132 * 119.88633 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46929 * 60.00397 * 1 2 3 30 30 H 1.08995 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47346 * 300.00416 * 1 2 3 32 32 H 1.07992 * 119.70451 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99751 * 179.97438 * 5 4 3 34 34 H 1.08006 * 125.13543 * 180.27955 * 9 7 6 35 35 H 1.07996 * 118.29964 * 0.81405 * 12 11 10 36 36 H 1.08994 * 109.51325 * 229.33159 * 13 12 11 37 37 H 1.09003 * 109.32549 * 109.26559 * 13 12 11 38 38 H 0.97000 * 120.00244 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.76422 * 57.58231 * 25 14 13 40 40 H 1.09007 * 109.76487 * 178.34369 * 25 14 13 41 41 H 1.08994 * 109.31433 * 40.72222 * 26 11 10 42 42 H 1.08999 * 109.16172 * 281.19354 * 26 11 10 43 43 H 1.07995 * 120.19132 * 0.03889 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2859 2.3779 0.0005 5 6 1.8960 3.6122 0.0011 6 6 3.2845 3.7021 0.0001 7 7 4.1612 4.7682 -0.0001 8 1 3.8993 5.7022 0.0000 9 6 5.4490 4.3185 0.0054 10 6 5.4605 2.9606 -0.0008 11 6 6.6517 2.0891 -0.0014 12 6 6.9694 1.4850 1.1200 13 6 8.1588 0.5834 1.2634 14 7 8.7192 0.3003 -0.0657 15 6 9.1108 -0.9423 -0.4111 16 8 9.5667 -1.1503 -1.5200 17 6 8.9930 -2.0402 0.5496 18 1 8.5928 -1.8547 1.5354 19 6 9.3993 -3.3315 0.1905 20 7 9.8830 -3.5562 -1.0023 21 14 9.2497 -4.7327 1.4169 22 1 7.8265 -4.8997 1.8064 23 1 9.7444 -5.9881 0.7969 24 1 10.0599 -4.4239 2.6225 25 6 8.8301 1.4278 -1.0071 26 6 7.4189 1.9531 -1.2830 27 6 4.0531 2.5265 -0.0004 28 6 3.4259 1.2813 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2079 2.3138 0.0005 33 1 1.2968 4.5108 0.0011 34 1 6.3270 4.9474 0.0107 35 1 6.3393 1.6428 1.9828 36 1 7.8533 -0.3500 1.7361 37 1 8.9121 1.0751 1.8790 38 1 10.1648 -4.4504 -1.2510 39 1 9.4378 2.2179 -0.5661 40 1 9.2852 1.0879 -1.9375 41 1 7.4851 2.9267 -1.7686 42 1 6.8973 1.2572 -1.9401 43 1 4.0154 0.3765 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130207104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:34 Heat of formation + Delta-G solvation = 7.266167 kcal Electronic energy + Delta-G solvation = -26838.775438 eV Core-core repulsion = 23043.141708 eV Total energy + Delta-G solvation = -3795.633730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28804 -39.29015 -38.34413 -35.94592 -35.58948 -32.97416 -32.39499 -31.08180 -30.41535 -29.09255 -28.51119 -26.97701 -26.26914 -24.39037 -23.01746 -22.75276 -21.49613 -20.43878 -19.42645 -18.29854 -17.62581 -17.25586 -16.28941 -15.75247 -15.70528 -15.60092 -15.48589 -14.66185 -14.41092 -14.22982 -14.07230 -13.84597 -13.61188 -13.25226 -12.96893 -12.84289 -12.73278 -12.38194 -12.15869 -12.07089 -11.84894 -11.75550 -11.34572 -11.16564 -10.90413 -10.84435 -10.75287 -10.65367 -10.27465 -10.07512 -9.96007 -9.54498 -8.78714 -8.34694 -7.97977 -7.53764 -7.39196 -7.13875 -6.12991 -4.57972 1.02185 1.59918 2.43763 2.78065 3.05774 3.20812 3.25411 3.27213 3.32014 3.84122 4.14570 4.61055 4.62449 4.63573 4.77684 4.91257 4.98958 5.02608 5.10026 5.28398 5.33739 5.41321 5.47652 5.55375 5.70707 5.78833 5.87912 5.92944 6.00322 6.10834 6.18339 6.20214 6.33500 6.40210 6.48475 6.51435 6.60441 6.72616 6.78168 6.96838 7.12355 7.37521 7.45420 7.48517 7.52110 7.69093 8.19660 8.44063 9.08488 9.52462 10.64606 10.83500 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003500 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.358438 B = 7997.074282 C = 9668.287400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.095 3.905 4 C -0.180 4.180 5 C -0.097 4.097 6 C 0.063 3.937 7 N -0.596 5.596 8 H 0.413 0.587 9 C 0.062 3.938 10 C -0.130 4.130 11 C -0.056 4.056 12 C -0.147 4.147 13 C 0.152 3.848 14 N -0.642 5.642 15 C 0.563 3.437 16 O -0.578 6.578 17 C -0.544 4.544 18 H 0.072 0.928 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.905 3.095 22 H -0.267 1.267 23 H -0.281 1.281 24 H -0.268 1.268 25 C 0.121 3.879 26 C -0.087 4.087 27 C -0.055 4.055 28 C -0.100 4.100 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.172 0.828 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.999 16.113 4.404 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.231 6.231 3 C 0.050 3.950 4 C -0.199 4.199 5 C -0.117 4.117 6 C -0.042 4.042 7 N -0.199 5.199 8 H 0.250 0.750 9 C -0.065 4.065 10 C -0.138 4.138 11 C -0.057 4.057 12 C -0.166 4.166 13 C 0.028 3.972 14 N -0.381 5.381 15 C 0.369 3.631 16 O -0.461 6.461 17 C -0.580 4.580 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.004 4.004 26 C -0.126 4.126 27 C -0.060 4.060 28 C -0.119 4.119 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.189 0.811 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.587 15.766 3.635 23.171 hybrid contribution -0.722 0.061 0.717 1.020 sum -17.309 15.827 4.352 23.854 Atomic orbital electron populations 1.22987 0.79005 1.03691 1.00860 1.86126 1.20767 1.26709 1.89460 1.18609 0.91828 0.84000 1.00591 1.20848 0.99526 0.91480 1.08055 1.19715 0.90385 0.97469 1.04170 1.18137 0.91337 0.87306 1.07429 1.41546 1.04760 1.07459 1.66147 0.75031 1.21905 0.86337 0.94550 1.03690 1.19240 0.91090 0.91863 1.11599 1.18800 0.93596 0.97848 0.95412 1.22879 0.98619 0.97845 0.97277 1.20177 0.91792 0.98416 0.86802 1.48276 1.68212 1.08635 1.12989 1.18180 0.77142 0.79997 0.87797 1.90586 1.49943 1.81972 1.23616 1.20937 1.44951 0.92155 0.99975 0.91032 1.25716 0.92897 0.99416 0.95103 1.70007 1.29859 1.21565 1.18255 0.86476 0.79343 0.80151 0.81069 1.19202 1.20599 1.19258 1.21176 0.94170 0.89232 0.95795 1.20694 0.96601 1.00523 0.94735 1.18821 0.92480 0.91368 1.03292 1.19717 0.91026 0.97381 1.03814 0.92994 0.88473 0.93009 0.85362 0.86166 0.81077 0.87634 0.88365 0.92769 0.92104 0.93667 0.89634 0.91679 0.90972 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.28 10.49 -19.70 -0.21 -4.49 16 3 C 0.10 1.32 6.68 -39.25 -0.26 1.06 16 4 C -0.18 -2.00 9.01 -39.42 -0.36 -2.36 16 5 C -0.10 -1.03 10.06 -39.45 -0.40 -1.42 16 6 C 0.06 0.78 7.26 -83.91 -0.61 0.17 16 7 N -0.60 -5.79 6.05 -10.37 -0.06 -5.86 16 8 H 0.41 2.51 8.96 -40.82 -0.37 2.14 16 9 C 0.06 0.68 11.80 -16.39 -0.19 0.49 16 10 C -0.13 -1.89 5.40 -103.28 -0.56 -2.45 16 11 C -0.06 -0.91 5.71 -102.94 -0.59 -1.50 16 12 C -0.15 -2.47 9.57 -36.46 -0.35 -2.82 16 13 C 0.15 2.93 6.44 -5.29 -0.03 2.90 16 14 N -0.64 -15.04 2.97 -176.05 -0.52 -15.56 16 15 C 0.56 16.34 7.66 -12.99 -0.10 16.25 16 16 O -0.58 -19.02 14.50 5.20 0.08 -18.95 16 17 C -0.54 -15.48 8.84 -35.63 -0.31 -15.79 16 18 H 0.07 1.85 5.85 -52.49 -0.31 1.54 16 19 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -23.32 11.83 55.55 0.66 -22.67 16 21 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C 0.12 2.42 6.49 -3.56 -0.02 2.39 16 26 C -0.09 -1.51 5.95 -28.18 -0.17 -1.68 16 27 C -0.05 -0.82 6.35 -104.95 -0.67 -1.49 16 28 C -0.10 -1.57 10.03 -39.18 -0.39 -1.97 16 29 H 0.05 0.37 7.65 -51.93 -0.40 -0.02 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 32 H 0.13 1.07 6.26 -52.49 -0.33 0.74 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.11 1.61 7.94 -52.49 -0.42 1.19 16 36 H 0.10 1.98 5.66 -51.93 -0.29 1.69 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.90 7.07 -51.93 -0.37 1.54 16 41 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -37.02 359.48 -9.17 -46.19 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.39 Total: 5.12 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.11 Total: -4.57 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.07 Total: -44.09 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.13 Total: -23.44 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.02 -9.17 -46.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130207104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.459 kcal (2) G-P(sol) polarization free energy of solvation -37.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds