Wall clock time and date at job start Tue Mar 31 2020 14:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35988 * 116.99615 * 2 1 4 4 C 1.39226 * 119.89707 * 0.02562 * 3 2 1 5 5 C 1.37688 * 120.58977 * 179.97438 * 4 3 2 6 6 C 1.39142 * 120.00486 * 0.04591 * 5 4 3 7 7 N 1.38022 * 133.13180 * 179.97438 * 6 5 4 8 8 H 0.97001 * 124.91001 * 359.97438 * 7 6 5 9 9 C 1.36412 * 110.18196 * 179.70584 * 7 6 5 10 10 C 1.35794 * 109.73206 * 0.45514 * 9 7 6 11 11 C 1.47597 * 126.67495 * 179.82718 * 10 9 7 12 12 C 1.31276 * 117.81697 * 104.66331 * 11 10 9 13 13 C 1.49944 * 123.39002 * 180.58033 * 12 11 10 14 14 N 1.46997 * 109.37443 * 349.36080 * 13 12 11 15 15 C 1.34784 * 121.33011 * 223.15940 * 14 13 12 16 16 O 1.21682 * 119.99954 * 179.71467 * 15 14 13 17 17 C 1.46368 * 119.99916 * 359.44460 * 15 14 13 18 18 H 1.07998 * 120.00437 * 359.97438 * 17 15 14 19 19 C 1.40055 * 119.99853 * 179.97438 * 17 15 14 20 20 N 1.30662 * 119.99894 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99877 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47200 * 59.99901 * 21 19 17 23 23 H 1.48497 * 109.47049 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47156 * 299.99916 * 21 19 17 25 25 C 1.47302 * 117.33446 * 42.88620 * 14 13 12 26 26 C 1.49987 * 117.81803 * 284.68822 * 11 10 9 27 27 C 1.40454 * 119.47503 * 359.95333 * 6 5 4 28 28 C 1.38132 * 119.88633 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46929 * 60.00397 * 1 2 3 30 30 H 1.08995 * 109.47011 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47346 * 300.00416 * 1 2 3 32 32 H 1.07992 * 119.70451 * 359.97438 * 4 3 2 33 33 H 1.08002 * 119.99751 * 179.97438 * 5 4 3 34 34 H 1.08006 * 125.13543 * 180.27955 * 9 7 6 35 35 H 1.07996 * 118.29964 * 0.81405 * 12 11 10 36 36 H 1.08994 * 109.51325 * 229.33159 * 13 12 11 37 37 H 1.09003 * 109.32549 * 109.26559 * 13 12 11 38 38 H 0.97000 * 120.00244 * 179.97438 * 20 19 17 39 39 H 1.08993 * 109.76422 * 57.58231 * 25 14 13 40 40 H 1.09007 * 109.76487 * 178.34369 * 25 14 13 41 41 H 1.08994 * 109.31433 * 40.72222 * 26 11 10 42 42 H 1.08999 * 109.16172 * 281.19354 * 26 11 10 43 43 H 1.07995 * 120.19132 * 0.03889 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2859 2.3779 0.0005 5 6 1.8960 3.6122 0.0011 6 6 3.2845 3.7021 0.0001 7 7 4.1612 4.7682 -0.0001 8 1 3.8993 5.7022 0.0000 9 6 5.4490 4.3185 0.0054 10 6 5.4605 2.9606 -0.0008 11 6 6.6517 2.0891 -0.0014 12 6 6.9694 1.4850 1.1200 13 6 8.1588 0.5834 1.2634 14 7 8.7192 0.3003 -0.0657 15 6 9.1108 -0.9423 -0.4111 16 8 9.5667 -1.1503 -1.5200 17 6 8.9930 -2.0402 0.5496 18 1 8.5928 -1.8547 1.5354 19 6 9.3993 -3.3315 0.1905 20 7 9.8830 -3.5562 -1.0023 21 14 9.2497 -4.7327 1.4169 22 1 7.8265 -4.8997 1.8064 23 1 9.7444 -5.9881 0.7969 24 1 10.0599 -4.4239 2.6225 25 6 8.8301 1.4278 -1.0071 26 6 7.4189 1.9531 -1.2830 27 6 4.0531 2.5265 -0.0004 28 6 3.4259 1.2813 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2079 2.3138 0.0005 33 1 1.2968 4.5108 0.0011 34 1 6.3270 4.9474 0.0107 35 1 6.3393 1.6428 1.9828 36 1 7.8533 -0.3500 1.7361 37 1 8.9121 1.0751 1.8790 38 1 10.1648 -4.4504 -1.2510 39 1 9.4378 2.2179 -0.5661 40 1 9.2852 1.0879 -1.9375 41 1 7.4851 2.9267 -1.7686 42 1 6.8973 1.2572 -1.9401 43 1 4.0154 0.3765 -0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130207104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:33 Heat of formation + Delta-G solvation = -17.686411 kcal Electronic energy + Delta-G solvation = -26839.857463 eV Core-core repulsion = 23043.141708 eV Total energy + Delta-G solvation = -3796.715755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.20589 -40.31116 -40.02822 -37.73439 -36.59390 -34.72691 -34.30294 -32.34762 -31.87092 -30.06990 -29.55492 -28.38939 -27.70955 -25.93996 -24.39656 -23.90591 -22.39392 -21.92297 -20.99208 -19.39991 -18.95559 -18.50312 -17.78805 -17.21631 -17.09620 -16.59361 -16.40093 -16.36821 -16.01499 -15.73095 -15.26893 -15.09431 -14.66506 -14.46231 -14.37465 -14.25143 -13.86950 -13.66705 -13.62655 -13.43843 -13.22487 -12.93032 -12.86925 -12.78307 -12.61749 -12.56953 -12.10970 -11.96788 -11.79753 -11.50982 -11.43740 -10.90830 -10.55635 -9.85172 -9.61477 -9.07198 -8.89566 -8.37596 -8.27611 -6.82931 0.10134 0.64410 1.21847 1.39218 1.43425 1.54359 1.76212 2.24367 2.25158 2.47490 2.50282 2.85727 2.86940 3.60993 3.77772 3.87273 3.96634 4.08549 4.19379 4.30268 4.34300 4.40173 4.43740 4.46626 4.49997 4.56481 4.64349 4.73456 4.74091 4.80745 4.86304 4.94791 5.03853 5.06569 5.17256 5.32695 5.37371 5.38003 5.52198 5.63285 5.77317 5.88966 6.06668 6.09628 6.14471 6.43782 6.56610 6.78711 6.88668 7.45044 8.48341 8.68766 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003500 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.358438 B = 7997.074282 C = 9668.287400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.349 6.349 3 C 0.091 3.909 4 C -0.183 4.183 5 C -0.079 4.079 6 C 0.053 3.947 7 N -0.574 5.574 8 H 0.435 0.565 9 C 0.099 3.901 10 C -0.182 4.182 11 C -0.044 4.044 12 C -0.157 4.157 13 C 0.151 3.849 14 N -0.647 5.647 15 C 0.543 3.457 16 O -0.633 6.633 17 C -0.571 4.571 18 H 0.091 0.909 19 C 0.029 3.971 20 N -0.823 5.823 21 Si 0.994 3.006 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.117 3.883 26 C -0.079 4.079 27 C -0.078 4.078 28 C -0.147 4.147 29 H 0.067 0.933 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.209 0.791 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.274 0.726 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.102 0.898 42 H 0.039 0.961 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.513 19.099 6.383 28.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.264 6.264 3 C 0.046 3.954 4 C -0.202 4.202 5 C -0.099 4.099 6 C -0.053 4.053 7 N -0.179 5.179 8 H 0.276 0.724 9 C -0.030 4.030 10 C -0.189 4.189 11 C -0.045 4.045 12 C -0.176 4.176 13 C 0.028 3.972 14 N -0.384 5.384 15 C 0.350 3.650 16 O -0.521 6.521 17 C -0.607 4.607 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.452 5.452 21 Si 0.813 3.187 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.006 4.006 26 C -0.117 4.117 27 C -0.082 4.082 28 C -0.167 4.167 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.226 0.774 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.155 18.840 5.650 27.455 hybrid contribution -0.031 -0.744 0.049 0.747 sum -19.187 18.096 5.699 26.982 Atomic orbital electron populations 1.23311 0.76471 1.05233 1.02415 1.86084 1.23564 1.27300 1.89426 1.18810 0.91460 0.85192 0.99968 1.21182 1.00959 0.90555 1.07496 1.20199 0.89964 0.98698 1.01022 1.18293 0.92132 0.86984 1.07934 1.41533 1.03910 1.08153 1.64264 0.72373 1.22349 0.87731 0.93487 0.99442 1.19124 0.90067 0.93242 1.16502 1.18795 0.93908 0.97672 0.94120 1.22770 0.98163 0.98066 0.98577 1.20302 0.93414 0.98676 0.84769 1.48148 1.67235 1.07969 1.15057 1.18585 0.77040 0.82062 0.87350 1.90527 1.52435 1.83549 1.25557 1.21480 1.45370 0.92945 1.00890 0.89063 1.26992 0.91606 1.02674 0.97331 1.70189 1.31175 1.22731 1.21112 0.85129 0.79957 0.75536 0.78065 1.18102 1.19780 1.17399 1.21349 0.96427 0.88789 0.94020 1.20604 0.94371 1.01316 0.95372 1.19010 0.93353 0.92023 1.03843 1.19632 0.92142 0.96780 1.08147 0.91460 0.87173 0.91230 0.82141 0.82011 0.77392 0.85944 0.89865 0.90639 0.91638 0.90520 0.92867 0.87950 0.94224 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.35 -9.67 10.49 -93.41 -0.98 -10.65 16 3 C 0.09 2.56 6.68 22.48 0.15 2.71 16 4 C -0.18 -3.60 9.01 22.38 0.20 -3.40 16 5 C -0.08 -1.37 10.06 22.36 0.22 -1.14 16 6 C 0.05 1.14 7.26 38.93 0.28 1.43 16 7 N -0.57 -8.67 6.05 -186.71 -1.13 -9.80 16 8 H 0.44 2.90 8.96 -92.71 -0.83 2.06 16 9 C 0.10 1.81 11.80 83.41 0.98 2.79 16 10 C -0.18 -5.06 5.40 -18.99 -0.10 -5.16 16 11 C -0.04 -1.45 5.71 -17.93 -0.10 -1.55 16 12 C -0.16 -5.32 9.57 25.14 0.24 -5.08 16 13 C 0.15 5.96 6.44 85.30 0.55 6.51 16 14 N -0.65 -31.72 2.97 -829.13 -2.46 -34.18 16 15 C 0.54 33.46 7.66 86.36 0.66 34.12 16 16 O -0.63 -44.60 14.50 -4.29 -0.06 -44.67 16 17 C -0.57 -33.84 8.84 24.83 0.22 -33.62 16 18 H 0.09 4.86 5.85 -2.91 -0.02 4.84 16 19 C 0.03 1.68 5.50 85.31 0.47 2.15 16 20 N -0.82 -52.35 11.83 21.84 0.26 -52.10 16 21 Si 0.99 42.69 29.56 68.60 2.03 44.71 16 22 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 25 C 0.12 4.88 6.49 86.25 0.56 5.44 16 26 C -0.08 -2.78 5.95 29.65 0.18 -2.60 16 27 C -0.08 -2.31 6.35 -20.07 -0.13 -2.44 16 28 C -0.15 -4.94 10.03 22.53 0.23 -4.72 16 29 H 0.07 0.82 7.65 -2.39 -0.02 0.81 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 32 H 0.16 2.03 6.26 -2.91 -0.02 2.01 16 33 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.12 3.73 7.94 -2.91 -0.02 3.71 16 36 H 0.08 3.49 5.66 -2.39 -0.01 3.48 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.27 15.80 8.29 -92.71 -0.77 15.03 16 39 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.05 2.54 7.07 -2.38 -0.02 2.52 16 41 H 0.10 2.81 8.13 -2.39 -0.02 2.79 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -89.42 359.48 3.61 -85.82 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.23 Total: 24.00 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 5.72 Total: -3.14 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -3.33 Total: -96.07 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -1.04 Total: -55.31 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -89.42 3.61 -85.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130207104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.129 kcal (2) G-P(sol) polarization free energy of solvation -89.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds