Wall clock time and date at job start Tue Mar 31 2020 14:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35866 * 117.00179 * 2 1 4 4 C 1.38833 * 119.93440 * 179.97438 * 3 2 1 5 5 C 1.37905 * 120.06642 * 180.02562 * 4 3 2 6 6 C 1.39372 * 119.93477 * 0.02562 * 5 4 3 7 7 C 1.48384 * 120.06701 * 179.97438 * 6 5 4 8 8 C 1.39455 * 120.46858 * 0.02562 * 7 6 5 9 9 N 1.31784 * 120.90922 * 179.97438 * 8 7 6 10 10 C 1.31722 * 122.01717 * 359.72444 * 9 8 7 11 11 C 1.39587 * 120.83329 * 0.54465 * 10 9 8 12 12 C 1.47853 * 120.49705 * 179.74975 * 11 10 9 13 13 O 1.21554 * 119.99860 * 148.61220 * 12 11 10 14 14 N 1.34777 * 120.00422 * 328.60603 * 12 11 10 15 15 C 1.46500 * 119.99421 * 4.24366 * 14 12 11 16 16 C 1.46495 * 120.00551 * 184.24856 * 14 12 11 17 17 C 1.50699 * 109.47393 * 89.99547 * 16 14 12 18 18 H 1.08005 * 120.00131 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00414 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99637 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00501 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46671 * 60.00247 * 21 19 17 23 23 H 1.48502 * 109.46977 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47059 * 300.00285 * 21 19 17 25 25 C 1.39487 * 120.47001 * 180.02562 * 7 6 5 26 26 C 1.39373 * 119.87134 * 0.25335 * 6 5 4 27 27 C 1.37910 * 119.93311 * 359.46875 * 26 6 5 28 28 H 1.08999 * 109.47145 * 59.99909 * 1 2 3 29 29 H 1.09002 * 109.47921 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47144 * 299.99839 * 1 2 3 31 31 H 1.08006 * 119.96905 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.03615 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.54590 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.58106 * 180.28846 * 10 9 8 35 35 H 1.09005 * 109.47326 * 93.91443 * 15 14 12 36 36 H 1.09005 * 109.47266 * 213.91425 * 15 14 12 37 37 H 1.08996 * 109.47884 * 333.91359 * 15 14 12 38 38 H 1.09001 * 109.47471 * 209.99921 * 16 14 12 39 39 H 1.09002 * 109.46604 * 329.99841 * 16 14 12 40 40 H 0.97003 * 120.00177 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.91304 * 359.97438 * 25 7 6 42 42 H 1.08000 * 120.03276 * 179.72857 * 26 6 5 43 43 H 1.07995 * 119.97174 * 180.27680 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4324 1.2816 0.0005 5 6 4.0613 2.5089 0.0011 6 6 3.3036 3.6786 0.0016 7 6 3.9773 5.0007 0.0028 8 6 5.3693 5.0851 0.0028 9 7 5.9766 6.2546 0.0033 10 6 5.3073 7.3891 -0.0016 11 6 3.9115 7.3963 0.0039 12 6 3.1677 8.6741 0.0039 13 8 2.0831 8.7460 -0.5403 14 7 3.6920 9.7591 0.6075 15 6 5.0382 9.6986 1.1822 16 6 2.9159 10.9989 0.6889 17 6 2.1013 10.9993 1.9567 18 1 2.1565 10.1601 2.6344 19 6 1.2863 12.0714 2.2522 20 7 1.2194 13.0935 1.4273 21 14 0.2771 12.0723 3.8241 22 1 1.1852 11.9785 4.9953 23 1 -0.5097 13.3290 3.9065 24 1 -0.6469 10.9097 3.8198 25 6 3.2273 6.1768 0.0038 26 6 1.9119 3.6042 0.0070 27 6 1.2885 2.3741 0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0190 0.3748 0.0014 32 1 5.1399 2.5635 0.0011 33 1 5.9577 4.1794 0.0015 34 1 5.8453 8.3255 -0.0057 35 1 5.7623 10.0569 0.4503 36 1 5.0816 10.3253 2.0730 37 1 5.2727 8.6686 1.4509 38 1 3.5938 11.8525 0.6923 39 1 2.2496 11.0675 -0.1711 40 1 0.6457 13.8477 1.6350 41 1 2.1477 6.1463 0.0035 42 1 1.3222 4.5090 0.0118 43 1 0.2101 2.3158 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134724808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:54 Heat of formation + Delta-G solvation = 10.360772 kcal Electronic energy + Delta-G solvation = -26154.062121 eV Core-core repulsion = 22358.562583 eV Total energy + Delta-G solvation = -3795.499538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84785 -40.17586 -38.62441 -37.59766 -35.10328 -33.19289 -32.87520 -31.95808 -31.33543 -29.31488 -27.86791 -27.43821 -26.30100 -24.67732 -23.97148 -22.92924 -21.94769 -21.49349 -19.20257 -18.55714 -17.23507 -16.98412 -16.80520 -16.58261 -16.07776 -15.94391 -15.44826 -15.14820 -14.70328 -14.59103 -14.26140 -14.10836 -13.82016 -13.62710 -13.13488 -13.10280 -13.01288 -12.85878 -12.43415 -12.21102 -12.18191 -12.13099 -11.64003 -11.43271 -11.18359 -11.05477 -10.93396 -10.61547 -10.23678 -9.99338 -9.84399 -9.68181 -9.36153 -9.30184 -9.00812 -8.47991 -7.98000 -7.76967 -6.09232 -4.14674 0.39331 0.97050 1.06308 1.63950 2.92055 3.20031 3.29055 3.33477 3.36042 3.52528 3.74250 4.02519 4.24202 4.40097 4.41967 4.48899 4.57316 4.70649 4.76572 4.79342 4.85377 4.89412 4.99858 5.10097 5.13321 5.25244 5.26756 5.40304 5.42574 5.58640 5.74204 5.77401 5.82780 5.96900 6.01444 6.11388 6.15309 6.36269 6.39521 6.53063 6.96839 7.03838 7.35820 7.42437 7.82495 7.86258 8.16174 8.25285 8.78831 8.94481 9.50448 10.98847 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002763 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.941631 B =10131.681694 C =11618.112989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.149 4.149 5 C -0.070 4.070 6 C -0.075 4.075 7 C -0.099 4.099 8 C 0.115 3.885 9 N -0.483 5.483 10 C 0.110 3.890 11 C -0.162 4.162 12 C 0.549 3.451 13 O -0.534 6.534 14 N -0.590 5.590 15 C 0.063 3.937 16 C 0.244 3.756 17 C -0.531 4.531 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.021 4.021 26 C -0.066 4.066 27 C -0.203 4.203 28 H 0.057 0.943 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.158 0.842 34 H 0.178 0.822 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.265 0.735 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 -23.346 -2.607 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.167 4.167 5 C -0.088 4.088 6 C -0.076 4.076 7 C -0.101 4.101 8 C -0.043 4.043 9 N -0.191 5.191 10 C -0.047 4.047 11 C -0.167 4.167 12 C 0.335 3.665 13 O -0.412 6.412 14 N -0.321 5.321 15 C -0.080 4.080 16 C 0.126 3.874 17 C -0.569 4.569 18 H 0.075 0.925 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.047 4.047 26 C -0.084 4.084 27 C -0.222 4.222 28 H 0.075 0.925 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.175 0.825 34 H 0.195 0.805 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.069 -23.223 -2.909 24.179 hybrid contribution -1.811 0.248 0.978 2.073 sum 4.258 -22.975 -1.931 23.446 Atomic orbital electron populations 1.23089 0.78184 1.04021 1.01637 1.86052 1.21575 1.26967 1.88536 1.19144 0.92417 0.84150 0.96081 1.20331 0.91286 0.98542 1.06572 1.21001 0.99906 0.90593 0.97255 1.18494 0.92973 0.91457 1.04638 1.19608 0.94539 0.92569 1.03427 1.22973 0.90977 0.96125 0.94242 1.67717 1.40443 0.98138 1.12798 1.23832 0.90712 0.97425 0.92721 1.21242 0.95499 0.95495 1.04492 1.17935 0.85490 0.83000 0.80085 1.90760 1.21051 1.84177 1.45191 1.48076 1.16204 1.13664 1.54173 1.22283 0.84148 1.02332 0.99269 1.19373 0.90948 0.78695 0.98403 1.21375 1.25797 1.03973 1.05800 0.92467 1.24930 0.96583 0.95292 0.97193 1.69920 1.39144 1.07672 1.36460 0.86543 0.80226 0.77401 0.83173 1.20183 1.21099 1.20179 1.21737 1.01073 0.89970 0.91880 1.21129 0.93708 0.97647 0.95928 1.21198 1.00298 0.92033 1.08621 0.92453 0.88182 0.92454 0.84854 0.84768 0.82455 0.80540 0.92709 0.90412 0.91034 0.94566 0.93444 0.92558 0.83758 0.84979 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.96 10.49 -19.32 -0.20 -3.17 16 3 C 0.13 1.27 6.69 -39.14 -0.26 1.01 16 4 C -0.15 -1.37 9.97 -39.48 -0.39 -1.77 16 5 C -0.07 -0.64 9.43 -39.28 -0.37 -1.01 16 6 C -0.07 -0.83 5.88 -104.88 -0.62 -1.45 16 7 C -0.10 -1.26 5.89 -104.80 -0.62 -1.87 16 8 C 0.11 1.36 10.59 -17.12 -0.18 1.18 16 9 N -0.48 -6.55 10.33 -12.64 -0.13 -6.68 16 10 C 0.11 1.57 8.63 -17.10 -0.15 1.43 16 11 C -0.16 -2.71 5.49 -104.86 -0.58 -3.29 16 12 C 0.55 11.65 7.46 -12.33 -0.09 11.56 16 13 O -0.53 -13.44 16.35 5.32 0.09 -13.35 16 14 N -0.59 -12.48 2.86 -184.07 -0.53 -13.00 16 15 C 0.06 0.99 8.80 59.85 0.53 1.52 16 16 C 0.24 6.32 5.21 -5.20 -0.03 6.29 16 17 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 18 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 21 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C -0.02 -0.31 9.09 -38.52 -0.35 -0.66 16 26 C -0.07 -0.73 9.43 -39.28 -0.37 -1.10 16 27 C -0.20 -2.00 9.02 -39.48 -0.36 -2.36 16 28 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.13 0.90 6.22 -52.49 -0.33 0.57 16 33 H 0.16 1.33 6.21 -52.49 -0.33 1.01 16 34 H 0.18 2.24 4.74 -52.49 -0.25 1.99 16 35 H 0.05 0.71 7.42 -51.93 -0.39 0.32 16 36 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.07 0.99 4.75 -51.93 -0.25 0.75 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.05 1.38 7.37 -51.93 -0.38 0.99 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 41 H 0.14 2.16 6.26 -52.49 -0.33 1.83 16 42 H 0.13 1.41 6.26 -52.49 -0.33 1.09 16 43 H 0.13 1.03 6.28 -52.49 -0.33 0.70 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -34.32 359.72 -7.83 -42.15 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.93 Total: 0.46 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -3.26 Total: -2.93 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.08 Total: -45.20 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.12 Total: -16.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.32 -7.83 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134724808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.510 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds