Wall clock time and date at job start Tue Mar 31 2020 14:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35866 * 117.00179 * 2 1 4 4 C 1.38833 * 119.93440 * 179.97438 * 3 2 1 5 5 C 1.37905 * 120.06642 * 180.02562 * 4 3 2 6 6 C 1.39372 * 119.93477 * 0.02562 * 5 4 3 7 7 C 1.48384 * 120.06701 * 179.97438 * 6 5 4 8 8 C 1.39455 * 120.46858 * 0.02562 * 7 6 5 9 9 N 1.31784 * 120.90922 * 179.97438 * 8 7 6 10 10 C 1.31722 * 122.01717 * 359.72444 * 9 8 7 11 11 C 1.39587 * 120.83329 * 0.54465 * 10 9 8 12 12 C 1.47853 * 120.49705 * 179.74975 * 11 10 9 13 13 O 1.21554 * 119.99860 * 148.61220 * 12 11 10 14 14 N 1.34777 * 120.00422 * 328.60603 * 12 11 10 15 15 C 1.46500 * 119.99421 * 4.24366 * 14 12 11 16 16 C 1.46495 * 120.00551 * 184.24856 * 14 12 11 17 17 C 1.50699 * 109.47393 * 89.99547 * 16 14 12 18 18 H 1.08005 * 120.00131 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00414 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99637 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00501 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46671 * 60.00247 * 21 19 17 23 23 H 1.48502 * 109.46977 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47059 * 300.00285 * 21 19 17 25 25 C 1.39487 * 120.47001 * 180.02562 * 7 6 5 26 26 C 1.39373 * 119.87134 * 0.25335 * 6 5 4 27 27 C 1.37910 * 119.93311 * 359.46875 * 26 6 5 28 28 H 1.08999 * 109.47145 * 59.99909 * 1 2 3 29 29 H 1.09002 * 109.47921 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47144 * 299.99839 * 1 2 3 31 31 H 1.08006 * 119.96905 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.03615 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.54590 * 0.02562 * 8 7 6 34 34 H 1.07994 * 119.58106 * 180.28846 * 10 9 8 35 35 H 1.09005 * 109.47326 * 93.91443 * 15 14 12 36 36 H 1.09005 * 109.47266 * 213.91425 * 15 14 12 37 37 H 1.08996 * 109.47884 * 333.91359 * 15 14 12 38 38 H 1.09001 * 109.47471 * 209.99921 * 16 14 12 39 39 H 1.09002 * 109.46604 * 329.99841 * 16 14 12 40 40 H 0.97003 * 120.00177 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.91304 * 359.97438 * 25 7 6 42 42 H 1.08000 * 120.03276 * 179.72857 * 26 6 5 43 43 H 1.07995 * 119.97174 * 180.27680 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4324 1.2816 0.0005 5 6 4.0613 2.5089 0.0011 6 6 3.3036 3.6786 0.0016 7 6 3.9773 5.0007 0.0028 8 6 5.3693 5.0851 0.0028 9 7 5.9766 6.2546 0.0033 10 6 5.3073 7.3891 -0.0016 11 6 3.9115 7.3963 0.0039 12 6 3.1677 8.6741 0.0039 13 8 2.0831 8.7460 -0.5403 14 7 3.6920 9.7591 0.6075 15 6 5.0382 9.6986 1.1822 16 6 2.9159 10.9989 0.6889 17 6 2.1013 10.9993 1.9567 18 1 2.1565 10.1601 2.6344 19 6 1.2863 12.0714 2.2522 20 7 1.2194 13.0935 1.4273 21 14 0.2771 12.0723 3.8241 22 1 1.1852 11.9785 4.9953 23 1 -0.5097 13.3290 3.9065 24 1 -0.6469 10.9097 3.8198 25 6 3.2273 6.1768 0.0038 26 6 1.9119 3.6042 0.0070 27 6 1.2885 2.3741 0.0006 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0190 0.3748 0.0014 32 1 5.1399 2.5635 0.0011 33 1 5.9577 4.1794 0.0015 34 1 5.8453 8.3255 -0.0057 35 1 5.7623 10.0569 0.4503 36 1 5.0816 10.3253 2.0730 37 1 5.2727 8.6686 1.4509 38 1 3.5938 11.8525 0.6923 39 1 2.2496 11.0675 -0.1711 40 1 0.6457 13.8477 1.6350 41 1 2.1477 6.1463 0.0035 42 1 1.3222 4.5090 0.0118 43 1 0.2101 2.3158 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134724808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:53 Heat of formation + Delta-G solvation = -11.462206 kcal Electronic energy + Delta-G solvation = -26155.008436 eV Core-core repulsion = 22358.562583 eV Total energy + Delta-G solvation = -3796.445853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94756 -41.04218 -40.03190 -38.41117 -36.83569 -34.91417 -34.12070 -33.24827 -32.13424 -30.38237 -29.41190 -28.20311 -27.71205 -26.13557 -25.00446 -24.39078 -22.93351 -22.47613 -20.63268 -19.31204 -18.73600 -18.49137 -18.09571 -17.79586 -17.10666 -16.68490 -16.67923 -16.57616 -16.17774 -15.91659 -15.47731 -15.00977 -14.90353 -14.69222 -14.40980 -14.25028 -14.07766 -14.00203 -13.79101 -13.65701 -13.38644 -13.05215 -12.98475 -12.80176 -12.62871 -12.47701 -12.26112 -12.19815 -11.78279 -11.76692 -11.17264 -11.03303 -10.66871 -10.51180 -10.35788 -10.05086 -9.54598 -8.81433 -8.25457 -6.40579 -0.57464 -0.18693 0.33198 0.73249 1.35595 1.39407 1.46951 1.77227 2.17162 2.33015 2.38395 2.57786 2.96585 3.04368 3.22760 3.44437 3.59936 3.67020 3.74548 3.81195 3.87565 4.13019 4.20445 4.27215 4.34028 4.36842 4.42546 4.54124 4.57186 4.63741 4.73471 4.85888 4.87132 4.89367 5.00308 5.02147 5.17505 5.21832 5.29283 5.47077 5.50311 5.54928 5.68918 5.75430 6.00884 6.36949 6.56609 6.67632 6.75613 7.16792 7.33175 8.81786 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.002763 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.941631 B =10131.681694 C =11618.112989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.329 6.329 3 C 0.122 3.878 4 C -0.153 4.153 5 C -0.059 4.059 6 C -0.094 4.094 7 C -0.089 4.089 8 C 0.127 3.873 9 N -0.484 5.484 10 C 0.116 3.884 11 C -0.182 4.182 12 C 0.544 3.456 13 O -0.590 6.590 14 N -0.597 5.597 15 C 0.059 3.941 16 C 0.258 3.742 17 C -0.548 4.548 18 H 0.052 0.948 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.967 3.033 22 H -0.260 1.260 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.035 4.035 26 C -0.082 4.082 27 C -0.210 4.210 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.061 0.939 31 H 0.155 0.845 32 H 0.166 0.834 33 H 0.201 0.799 34 H 0.193 0.807 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.003 0.997 40 H 0.269 0.731 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.577 -26.117 -1.444 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.243 6.243 3 C 0.077 3.923 4 C -0.172 4.172 5 C -0.077 4.077 6 C -0.095 4.095 7 C -0.091 4.091 8 C -0.030 4.030 9 N -0.192 5.192 10 C -0.040 4.040 11 C -0.187 4.187 12 C 0.332 3.668 13 O -0.472 6.472 14 N -0.326 5.326 15 C -0.083 4.083 16 C 0.137 3.863 17 C -0.586 4.586 18 H 0.070 0.930 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.185 1.185 23 H -0.202 1.202 24 H -0.204 1.204 25 C -0.061 4.061 26 C -0.100 4.100 27 C -0.229 4.229 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.218 0.782 34 H 0.210 0.790 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.949 -26.006 -1.730 27.249 hybrid contribution -2.402 0.927 0.560 2.635 sum 5.547 -25.079 -1.170 25.712 Atomic orbital electron populations 1.23348 0.76596 1.05675 1.02131 1.86043 1.23297 1.26631 1.88296 1.19395 0.93087 0.84336 0.95492 1.20664 0.91219 0.99429 1.05841 1.21294 1.01292 0.89567 0.95535 1.18525 0.93070 0.91427 1.06489 1.19726 0.94936 0.92245 1.02150 1.23658 0.90820 0.97002 0.91540 1.67854 1.40033 0.98279 1.13008 1.23948 0.89390 0.98634 0.92048 1.20847 0.96390 0.93350 1.08151 1.18627 0.85075 0.84284 0.78779 1.90709 1.23735 1.85225 1.47573 1.48053 1.17848 1.12282 1.54434 1.22598 0.81789 1.03996 0.99882 1.18866 0.90604 0.80872 0.95926 1.21638 1.26616 1.03965 1.06408 0.92965 1.25842 0.97596 0.94807 1.00682 1.70037 1.39882 1.08296 1.38288 0.85472 0.78635 0.77453 0.79291 1.18466 1.20152 1.20355 1.21773 1.00950 0.90676 0.92680 1.21203 0.94176 0.97885 0.96701 1.21339 1.01168 0.91718 1.08660 0.91938 0.86041 0.91991 0.82744 0.81662 0.78232 0.79032 0.89377 0.90752 0.88750 0.94921 0.97895 0.92248 0.84995 0.85976 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -5.50 10.49 -92.05 -0.97 -6.46 16 3 C 0.12 2.22 6.69 22.55 0.15 2.38 16 4 C -0.15 -2.38 9.97 22.33 0.22 -2.15 16 5 C -0.06 -0.90 9.43 22.46 0.21 -0.69 16 6 C -0.09 -1.95 5.88 -20.03 -0.12 -2.07 16 7 C -0.09 -2.10 5.89 -19.98 -0.12 -2.22 16 8 C 0.13 2.58 10.59 84.99 0.90 3.48 16 9 N -0.48 -11.65 10.33 -193.90 -2.00 -13.65 16 10 C 0.12 3.14 8.63 85.04 0.73 3.87 16 11 C -0.18 -6.18 5.49 -20.02 -0.11 -6.29 16 12 C 0.54 24.23 7.46 86.79 0.65 24.88 16 13 O -0.59 -31.98 16.35 -3.89 -0.06 -32.04 16 14 N -0.60 -26.08 2.86 -854.56 -2.44 -28.52 16 15 C 0.06 1.80 8.80 127.77 1.12 2.92 16 16 C 0.26 14.03 5.21 85.63 0.45 14.48 16 17 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 19 C 0.01 0.59 5.46 84.65 0.46 1.05 16 20 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 21 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 C -0.03 -1.07 9.09 22.96 0.21 -0.86 16 26 C -0.08 -1.79 9.43 22.47 0.21 -1.58 16 27 C -0.21 -3.98 9.02 22.33 0.20 -3.78 16 28 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 29 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.56 7.65 -2.39 -0.02 0.55 16 31 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.17 1.35 6.22 -2.91 -0.02 1.33 16 33 H 0.20 2.27 6.21 -2.91 -0.02 2.25 16 34 H 0.19 4.45 4.74 -2.91 -0.01 4.43 16 35 H 0.09 2.11 7.42 -2.38 -0.02 2.10 16 36 H 0.07 2.33 8.10 -2.38 -0.02 2.31 16 37 H 0.09 2.47 4.75 -2.39 -0.01 2.46 16 38 H 0.03 1.77 8.07 -2.39 -0.02 1.75 16 39 H 0.00 0.18 7.37 -2.39 -0.02 0.17 16 40 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.13 4.29 6.26 -2.91 -0.02 4.27 16 42 H 0.12 2.82 6.26 -2.91 -0.02 2.80 16 43 H 0.14 2.19 6.28 -2.91 -0.02 2.18 16 Total: -1.00 -78.18 359.72 4.42 -73.76 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.06 Total: 12.45 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: 6.53 Total: 3.19 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -4.16 Total: -97.74 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.03 Total: -38.51 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -78.18 4.42 -73.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134724808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.297 kcal (2) G-P(sol) polarization free energy of solvation -78.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds