Wall clock time and date at job start Tue Mar 31 2020 14:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35709 * 116.99491 * 2 1 4 4 C 1.38638 * 120.15192 * 0.03291 * 3 2 1 5 5 C 1.38107 * 120.09373 * 179.97438 * 4 3 2 6 6 C 1.38519 * 120.39103 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.85138 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.46517 * 84.39842 * 7 6 5 9 9 C 1.46904 * 111.00075 * 75.82866 * 8 7 6 10 10 C 1.50699 * 109.47215 * 189.99561 * 9 8 7 11 11 H 1.08009 * 119.99566 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00334 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99899 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00375 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46985 * 0.02562 * 14 12 10 16 16 H 1.48496 * 109.47276 * 119.99886 * 14 12 10 17 17 H 1.48500 * 109.47237 * 240.00262 * 14 12 10 18 18 C 1.46909 * 110.99618 * 199.77538 * 8 7 6 19 19 C 1.50701 * 109.46819 * 75.60478 * 18 8 7 20 20 C 1.34508 * 125.79194 * 84.71057 * 19 18 8 21 21 C 1.41386 * 106.84324 * 179.89107 * 20 19 18 22 22 C 1.34513 * 106.83734 * 0.37302 * 21 20 19 23 23 O 1.34305 * 125.78521 * 265.02374 * 19 18 8 24 24 C 1.37823 * 120.29165 * 0.02562 * 6 5 4 25 25 C 1.39705 * 119.90631 * 359.97438 * 24 6 5 26 26 C 1.43200 * 120.19626 * 180.27428 * 25 24 6 27 27 N 3.53311 * 165.92690 * 179.36884 * 2 1 3 28 28 H 1.09005 * 109.46964 * 299.99105 * 1 2 3 29 29 H 1.08991 * 109.47956 * 59.99214 * 1 2 3 30 30 H 1.09007 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.95268 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.80587 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.47074 * 204.39829 * 7 6 5 34 34 H 1.08998 * 109.47195 * 324.40272 * 7 6 5 35 35 H 1.08997 * 109.46820 * 309.99716 * 9 8 7 36 36 H 1.08998 * 109.47218 * 69.99326 * 9 8 7 37 37 H 0.97000 * 120.00325 * 180.02562 * 13 12 10 38 38 H 1.09001 * 109.47226 * 195.59590 * 18 8 7 39 39 H 1.08994 * 109.47519 * 315.60591 * 18 8 7 40 40 H 1.07997 * 126.58273 * 0.02715 * 20 19 18 41 41 H 1.07996 * 126.58249 * 180.16708 * 21 20 19 42 42 H 1.08007 * 125.78870 * 179.75037 * 22 21 20 43 43 H 1.08001 * 120.04499 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2092 0.0000 4 6 1.2929 2.3739 0.0007 5 6 1.9210 3.6038 0.0012 6 6 3.3039 3.6845 0.0016 7 6 3.9766 5.0330 0.0016 8 7 4.0738 5.5316 1.3800 9 6 5.1416 4.8411 2.1155 10 6 5.0541 5.1948 3.5778 11 1 4.2825 5.8657 3.9259 12 6 5.9587 4.6619 4.4714 13 7 6.8985 3.8453 4.0475 14 14 5.8507 5.1008 6.2838 15 1 4.7140 6.0314 6.5008 16 1 5.6376 3.8658 7.0804 17 1 7.1141 5.7536 6.7113 18 6 4.2763 6.9865 1.4004 19 6 2.9763 7.6791 1.0819 20 6 2.0037 7.9710 1.9640 21 6 0.9750 8.6171 1.2406 22 6 1.3769 8.6739 -0.0418 23 8 2.5898 8.1042 -0.1321 24 6 4.0672 2.5369 0.0009 25 6 3.4446 1.2863 0.0004 26 6 4.2316 0.0899 0.0056 27 7 4.8561 -0.8591 0.0095 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5139 -0.8898 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2143 2.3192 0.0008 32 1 1.3306 4.5081 0.0013 33 1 4.9764 4.9403 -0.4226 34 1 3.3913 5.7311 -0.5968 35 1 5.0280 3.7639 1.9948 36 1 6.1108 5.1503 1.7244 37 1 7.5348 3.4700 4.6761 38 1 4.6177 7.2920 2.3895 39 1 5.0251 7.2597 0.6570 40 1 2.0086 7.7555 3.0222 41 1 0.0436 8.9902 1.6403 42 1 0.8187 9.1043 -0.8602 43 1 5.1451 2.6045 0.0017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135119068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:09 Heat of formation + Delta-G solvation = 42.968729 kcal Electronic energy + Delta-G solvation = -26986.223111 eV Core-core repulsion = 23192.137560 eV Total energy + Delta-G solvation = -3794.085551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.20906 -40.30026 -38.10343 -36.61268 -35.88139 -32.72258 -32.65069 -31.49707 -31.13735 -29.71747 -27.91973 -26.96873 -25.57383 -23.82245 -23.78439 -21.60691 -21.38733 -20.82925 -19.87068 -18.59646 -17.40665 -17.03365 -16.60940 -16.24951 -15.89113 -15.75539 -14.86759 -14.84257 -14.39188 -14.29348 -14.14444 -13.91783 -13.59243 -13.53206 -12.88237 -12.72941 -12.47922 -12.42470 -12.35320 -12.22606 -12.08639 -11.98303 -11.70717 -11.41080 -11.20348 -11.03628 -10.94817 -10.92534 -10.69477 -10.59631 -9.98705 -9.58777 -9.28194 -8.85808 -8.50126 -8.17513 -8.01372 -7.44587 -6.08163 -4.09966 0.99641 1.46313 2.05405 2.96009 2.98652 3.11877 3.20478 3.28349 3.32722 3.37060 3.40052 3.99129 4.16681 4.39412 4.78340 4.90280 4.95554 5.02310 5.04700 5.17393 5.25466 5.28938 5.33431 5.34118 5.37822 5.47581 5.52258 5.68538 5.83208 6.00533 6.06546 6.12087 6.22089 6.24204 6.31125 6.34741 6.49415 6.73524 6.77168 6.85123 7.09731 7.20244 7.24963 7.50964 7.71386 7.81671 7.93420 8.05761 8.40784 8.96981 9.54932 11.02409 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007345 B = 0.005073 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3811.069000 B = 5517.923113 C = 8127.624987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.166 3.834 4 C -0.213 4.213 5 C -0.024 4.024 6 C -0.094 4.094 7 C 0.091 3.909 8 N -0.525 5.525 9 C 0.190 3.810 10 C -0.511 4.511 11 H 0.065 0.935 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.137 3.863 19 C 0.013 3.987 20 C -0.199 4.199 21 C -0.213 4.213 22 C -0.061 4.061 23 O -0.183 6.183 24 C -0.016 4.016 25 C -0.065 4.065 26 C 0.272 3.728 27 N -0.430 5.430 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.041 0.959 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.119 0.881 39 H 0.040 0.960 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.194 0.806 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 3.842 -10.710 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.227 6.227 3 C 0.118 3.882 4 C -0.232 4.232 5 C -0.044 4.044 6 C -0.095 4.095 7 C -0.037 4.037 8 N -0.250 5.250 9 C 0.066 3.934 10 C -0.550 4.550 11 H 0.083 0.917 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.009 3.991 19 C -0.038 4.038 20 C -0.219 4.219 21 C -0.232 4.232 22 C -0.129 4.129 23 O -0.079 6.079 24 C -0.037 4.037 25 C -0.069 4.069 26 C -0.043 4.043 27 N -0.106 5.106 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.148 0.852 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.012 0.988 37 H 0.071 0.929 38 H 0.137 0.863 39 H 0.058 0.942 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.211 0.789 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.291 1.923 -10.657 17.144 hybrid contribution -0.053 0.859 0.959 1.289 sum -13.344 2.782 -9.698 16.729 Atomic orbital electron populations 1.23105 0.77988 1.04019 1.01707 1.86061 1.21744 1.26804 1.88080 1.18843 0.90308 0.84646 0.94406 1.21064 0.99979 0.91650 1.10495 1.20976 0.94043 0.96908 0.92425 1.19585 0.93340 0.94792 1.01790 1.21020 0.98450 0.92317 0.91937 1.62087 1.50188 1.01787 1.10967 1.19860 0.85907 0.94679 0.92957 1.21144 1.13771 1.28370 0.91701 0.91699 1.24954 0.95286 0.95087 0.98968 1.69946 1.17122 1.31397 1.34864 0.86500 0.77877 0.78293 0.85126 1.19607 1.21046 1.21106 1.20562 0.87398 0.88224 1.02923 1.22832 0.99025 1.00412 0.81516 1.21562 0.94179 1.04950 1.01248 1.21799 1.01477 1.05986 0.93931 1.23822 0.86143 1.03949 0.98989 1.84013 1.31360 1.59491 1.33080 1.21023 1.00537 0.89177 0.92947 1.15222 0.88076 0.88443 1.15202 1.25341 0.93077 0.92653 0.93219 1.81153 1.09024 1.10589 1.09877 0.92158 0.92374 0.88292 0.84827 0.85227 0.94033 0.90756 0.94085 0.98774 0.92869 0.86280 0.94189 0.83555 0.84160 0.78929 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.15 9.93 -18.83 -0.19 -4.34 16 3 C 0.17 2.33 6.69 -38.71 -0.26 2.07 16 4 C -0.21 -2.58 9.03 -39.48 -0.36 -2.94 16 5 C -0.02 -0.32 9.70 -39.53 -0.38 -0.71 16 6 C -0.09 -1.43 5.03 -104.67 -0.53 -1.96 16 7 C 0.09 1.44 4.94 -4.98 -0.02 1.42 16 8 N -0.53 -9.95 4.34 -238.96 -1.04 -10.98 16 9 C 0.19 4.45 4.54 -4.97 -0.02 4.43 16 10 C -0.51 -13.26 8.23 -34.44 -0.28 -13.54 16 11 H 0.06 1.66 7.31 -52.48 -0.38 1.28 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 13 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 14 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.14 2.38 5.33 -4.97 -0.03 2.36 16 19 C 0.01 0.20 6.16 -35.63 -0.22 -0.02 16 20 C -0.20 -3.05 10.81 -39.70 -0.43 -3.48 16 21 C -0.21 -2.70 10.91 -39.70 -0.43 -3.13 16 22 C -0.06 -0.73 12.09 29.42 0.36 -0.37 16 23 O -0.18 -2.66 10.17 5.69 0.06 -2.60 16 24 C -0.02 -0.25 8.10 -39.19 -0.32 -0.57 16 25 C -0.07 -1.03 5.75 -106.70 -0.61 -1.65 16 26 C 0.27 4.79 14.87 -22.47 -0.33 4.46 16 27 N -0.43 -8.27 18.54 41.84 0.78 -7.49 16 28 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 34 H 0.07 1.08 6.87 -51.93 -0.36 0.73 16 35 H 0.04 1.03 6.33 -51.93 -0.33 0.70 16 36 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 37 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.12 2.25 6.58 -51.93 -0.34 1.91 16 39 H 0.04 0.66 8.00 -51.93 -0.42 0.24 16 40 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 42 H 0.19 1.48 8.06 -52.48 -0.42 1.05 16 43 H 0.14 2.22 7.98 -52.49 -0.42 1.80 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -31.14 373.96 -7.47 -38.61 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -5.45 Total: 1.02 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -2.98 Total: -10.92 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.48 Total: -43.30 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.13 Total: -6.94 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.14 -7.47 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135119068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.580 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds